Abstract
The TCF4 gene encodes for the basic helix–loop–helix transcription factor 4 (TCF4), which plays an important role in the development of the central nervous system (CNS). Haploinsufficiency of TCF4 was found to cause Pitt-Hopkins syndrome (PTHS), a severe neurodevelopmental disorder. Recently, the screening of a large cohort of medulloblastoma (MB), a highly aggressive embryonal brain tumor, revealed almost 20% of adult patients with MB of the Sonic hedgehog (SHH) subtype carrying somatic TCF4 mutations. Interestingly, many of these mutations have previously been detected as germline mutations in patients with PTHS. We show here that overexpression of wild-type TCF4 in vitro significantly suppresses cell proliferation in MB cells, whereas mutant TCF4 proteins do not to the same extent. Furthermore, RNA sequencing revealed significant upregulation of multiple well-known tumor suppressors upon expression of wild-type TCF4. In vivo, a prenatal knockout of Tcf4 in mice caused a significant increase in apoptosis accompanied by a decreased proliferation and failed migration of cerebellar granule neuron precursor cells (CGNP), which are thought to be the cells of origin for SHH MB. In contrast, postnatal in vitro and in vivo knockouts of Tcf4 with and without an additional constitutive activation of the SHH pathway led to significantly increased proliferation of CGNP or MB cells. Finally, publicly available data from human MB show that relatively low expression levels of TCF4 significantly correlate with a worse clinical outcome. These results not only point to time-specific roles of Tcf4 during cerebellar development but also suggest a functional linkage between TCF4 mutations and the formation of SHH MB, proposing that TCF4 acts as a tumor suppressor during postnatal stages of cerebellar development.
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References
Algar EM, Muscat A, Dagar V, Rickert C, Chow CW, Biegel JA et al (2009) Imprinted CDKN1C is a tumor suppressor in rhabdoid tumor and activated by restoration of SMARCB1 and histone deacetylase inhibitors. PLoS One 4:e4482. https://doi.org/10.1371/journal.pone.0004482
Allen NP, Donninger H, Vos MD, Eckfeld K, Hesson L, Gordon L et al (2007) RASSF6 is a novel member of the RASSF family of tumor suppressors. Oncogene 26:6203–6211. https://doi.org/10.1038/sj.onc.1210440
Amiel J, Rio M, de Pontual L, Redon R, Malan V, Boddaert N et al (2007) Mutations in TCF4, encoding a class I basic helix-loop-helix transcription factor, are responsible for Pitt-Hopkins syndrome, a severe epileptic encephalopathy associated with autonomic dysfunction. Am J Hum Genet 80:988–993. https://doi.org/10.1086/515582
Andrews S (2014) FastQC a quality control tool for high throughput sequence data. http://www.bioinformatics.babraham.ac.uk/projects/fastqc
Appaiah H, Bhat-Nakshatri P, Mehta R, Thorat M, Badve S, Nakshatri H (2010) ITF2 is a target of CXCR4 in MDA-MB-231 breast cancer cells and is associated with reduced survival in estrogen receptor-negative breast cancer. Cancer Biol Ther 10:600–614
Blanluet M, Masliah-Planchon J, Giurgea I, Bielle F, Girard E, Andrianteranagna M et al (2019) SHH medulloblastoma in a young adult with a TCF4 germline pathogenic variation. Acta Neuropathol. https://doi.org/10.1007/s00401-019-01983-4
Benard M, Lebon A, Komuro H, Vaudry D, Galas L (2015) Ex vivo imaging of postnatal cerebellar granule cell migration using confocal macroscopy. J Vis Exp. https://doi.org/10.3791/52810
Bergqvist I, Eriksson M, Saarikettu J, Eriksson B, Corneliussen B, Grundstrom T et al (2000) The basic helix-loop-helix transcription factor E2-2 is involved in T lymphocyte development. Eur J Immunol 30:2857–2863. https://doi.org/10.1002/1521-4141(200010)30:10%3c2857:Aid-immu2857%3e3.0.Co;2-g
Bockmayr M, Mohme M, Klauschen F, Winkler B, Budczies J, Rutkowski S et al (2018) Subgroup-specific immune and stromal microenvironment in medulloblastoma. Oncoimmunology 7:e1462430. https://doi.org/10.1080/2162402x.2018.1462430
Brandl L, Horst D, de Toni E, Kirchner T, Herbst A, Kolligs FT (2015) ITF-2B protein levels are correlated with favorable prognosis in patients with colorectal carcinomas. Am J Cancer Res 5:2241–2248
Brzozka MM, Radyushkin K, Wichert SP, Ehrenreich H, Rossner MJ (2010) Cognitive and sensorimotor gating impairments in transgenic mice overexpressing the schizophrenia susceptibility gene Tcf4 in the brain. Biol Psychiatry 68:33–40. https://doi.org/10.1016/j.biopsych.2010.03.015
Budczies J, Klauschen F, Sinn BV, Gyorffy B, Schmitt WD, Darb-Esfahani S et al (2012) Cutoff Finder: a comprehensive and straightforward Web application enabling rapid biomarker cutoff optimization. PLoS One 7:e51862. https://doi.org/10.1371/journal.pone.0051862
Cavalli FMG, Remke M, Rampasek L, Peacock J, Shih DJH, Luu B et al (2017) Intertumoral heterogeneity within medulloblastoma subgroups. Cancer Cell 31:737.e736–754.e736. https://doi.org/10.1016/j.ccell.2017.05.005
Chen T, Wu Q, Zhang Y, Lu T, Yue W, Zhang D (2016) Tcf4 controls neuronal migration of the cerebral cortex through regulation of Bmp7. Front Mol Neurosci 9:94. https://doi.org/10.3389/fnmol.2016.00094
D’Rozario M, Zhang T, Waddell EA, Zhang Y, Sahin C, Sharoni M et al (2016) Type I bHLH proteins daughterless and Tcf4 restrict neurite branching and synapse formation by repressing neurexin in postmitotic neurons. Cell Rep 15:386–397. https://doi.org/10.1016/j.celrep.2016.03.034
de Pontual L, Mathieu Y, Golzio C, Rio M, Malan V, Boddaert N et al (2009) Mutational, functional, and expression studies of the TCF4 gene in Pitt–Hopkins syndrome. Hum Mutat 30:669–676. https://doi.org/10.1002/humu.20935
Dobin A, Davis CA, Schlesinger F, Drenkow J, Zaleski C, Jha S et al (2013) STAR: ultrafast universal RNA-seq aligner. Bioinformatics 29:15–21. https://doi.org/10.1093/bioinformatics/bts635
Edgar R, Domrachev M, Lash AE (2002) Gene expression omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 30:207–210
Edmondson JC, Hatten ME (1987) Glial-guided granule neuron migration in vitro: a high-resolution time-lapse video microscopic study. J Neurosci 7:1928–1934
Evron E, Umbricht CB, Korz D, Raman V, Loeb DM, Niranjan B et al (2001) Loss of cyclin D2 expression in the majority of breast cancers is associated with promoter hypermethylation. Cancer Res 61:2782–2787
Fang WT, Fan CC, Li SM, Jang TH, Lin HP, Shih NY et al (2014) Downregulation of a putative tumor suppressor BMP4 by SOX2 promotes growth of lung squamous cell carcinoma. Int J Cancer 135:809–819. https://doi.org/10.1002/ijc.28734
Fattet S, Haberler C, Legoix P, Varlet P, Lellouch-Tubiana A, Lair S et al (2009) Beta-catenin status in paediatric medulloblastomas: correlation of immunohistochemical expression with mutational status, genetic profiles, and clinical characteristics. J Pathol 218:86–94. https://doi.org/10.1002/path.2514
Fiaschetti G, Castelletti D, Zoller S, Schramm A, Schroeder C, Nagaishi M et al (2011) Bone morphogenetic protein-7 is a MYC target with prosurvival functions in childhood medulloblastoma. Oncogene 30:2823–2835. https://doi.org/10.1038/onc.2011.10
Flora A, Garcia JJ, Thaller C, Zoghbi HY (2007) The E-protein Tcf4 interacts with Math1 to regulate differentiation of a specific subset of neuronal progenitors. Proc Natl Acad Sci USA 104:15382–15387. https://doi.org/10.1073/pnas.0707456104
Flora A, Klisch TJ, Schuster G, Zoghbi HY (2009) Deletion of Atoh1 disrupts Sonic Hedgehog signaling in the developing cerebellum and prevents medulloblastoma. Science 326:1424–1427. https://doi.org/10.1126/science.1181453
Forrest M, Chapman RM, Doyle AM, Tinsley CL, Waite A, Blake DJ (2012) Functional analysis of TCF4 missense mutations that cause Pitt-Hopkins syndrome. Hum Mutat 33:1676–1686. https://doi.org/10.1002/humu.22160
Forrest MP, Waite AJ, Martin-Rendon E, Blake DJ (2013) Knockdown of human TCF4 affects multiple signaling pathways involved in cell survival, epithelial to mesenchymal transition and neuronal differentiation. PLoS One 8:e73169. https://doi.org/10.1371/journal.pone.0073169
Giordana MT, Schiffer P, Lanotte M, Girardi P, Chio A (1999) Epidemiology of adult medulloblastoma. Int J Cancer 80:689–692
Graham FL, Smiley J, Russell WC, Nairn R (1977) Characteristics of a human cell line transformed by DNA from human adenovirus type 5. J Gen Virol 36:59–74. https://doi.org/10.1099/0022-1317-36-1-59
Grill JI, Herbst A, Brandl L, Kong L, Schneider MR, Kirchner T et al (2015) Inactivation of Itf2 promotes intestinal tumorigenesis in Apc(Min/+) mice. Biochem Biophys Res Commun 461:249–253. https://doi.org/10.1016/j.bbrc.2015.04.009
Harvey K, Tapon N (2007) The Salvador–Warts–Hippo pathway—an emerging tumour-suppressor network. Nat Rev Cancer 7:182–191. https://doi.org/10.1038/nrc2070
Hasi M, Soileau B, Sebold C, Hill A, Hale DE, O’Donnell L et al (2011) The role of the TCF4 gene in the phenotype of individuals with 18q segmental deletions. Hum Genet 130:777–787. https://doi.org/10.1007/s00439-011-1020-y
Heckman KL, Pease LR (2007) Gene splicing and mutagenesis by PCR-driven overlap extension. Nat Protoc 2:924–932. https://doi.org/10.1038/nprot.2007.132
Herbst A, Bommer GT, Kriegl L, Jung A, Behrens A, Csanadi E et al (2009) ITF-2 is disrupted via allelic loss of chromosome 18q21, and ITF-2B expression is lost at the adenoma-carcinoma transition. Gastroenterology 137:639–648. https://doi.org/10.1053/j.gastro.2009.04.049
Herbst A, Helferich S, Behrens A, Goke B, Kolligs FT (2009) The transcription factor ITF-2A induces cell cycle arrest via p21(Cip1). Biochem Biophys Res Commun 387:736–740. https://doi.org/10.1016/j.bbrc.2009.07.102
Hoischen A, Krumm N, Eichler EE (2014) Prioritization of neurodevelopmental disease genes by discovery of new mutations. Nat Neurosci 17:764–772. https://doi.org/10.1038/nn.3703
Ivanov DP, Coyle B, Walker DA, Grabowska AM (2016) In vitro models of medulloblastoma: choosing the right tool for the job. J Biotechnol 236:10–25. https://doi.org/10.1016/j.jbiotec.2016.07.028
Jacobsen PF, Jenkyn DJ, Papadimitriou JM (1985) Establishment of a human medulloblastoma cell line and its heterotransplantation into nude mice. J Neuropathol Exp Neurol 44:472–485. https://doi.org/10.1097/00005072-198509000-00003
Jia H, Cong Q, Chua JF, Liu H, Xia X, Zhang X et al (2015) p57Kip2 is an unrecognized DNA damage response effector molecule that functions in tumor suppression and chemoresistance. Oncogene 34:3568–3581. https://doi.org/10.1038/onc.2014.287
Jung M, Haberle BM, Tschaikowsky T, Wittmann MT, Balta EA, Stadler VC et al (2018) Analysis of the expression pattern of the schizophrenia-risk and intellectual disability gene TCF4 in the developing and adult brain suggests a role in development and plasticity of cortical and hippocampal neurons. Mol Autism 9:20. https://doi.org/10.1186/s13229-018-0200-1
Kennedy AJ, Rahn EJ, Paulukaitis BS, Savell KE, Kordasiewicz HB, Wang J et al (2016) Tcf4 regulates synaptic plasticity, DNA methylation, and memory function. Cell Rep 16:2666–2685. https://doi.org/10.1016/j.celrep.2016.08.004
Kolligs FT, Nieman MT, Winer I, Hu G, Van Mater D, Feng Y et al (2002) ITF-2, a downstream target of the Wnt/TCF pathway, is activated in human cancers with beta-catenin defects and promotes neoplastic transformation. Cancer Cell 1:145–155
Kool M, Jones DT, Jager N, Northcott PA, Pugh TJ, Hovestadt V et al (2014) Genome sequencing of SHH medulloblastoma predicts genotype-related response to smoothened inhibition. Cancer Cell 25:393–405. https://doi.org/10.1016/j.ccr.2014.02.004
Kool M, Koster J, Bunt J, Hasselt NE, Lakeman A, van Sluis P et al (2008) Integrated genomics identifies five medulloblastoma subtypes with distinct genetic profiles, pathway signatures and clinicopathological features. PLoS One 3:e3088. https://doi.org/10.1371/journal.pone.0003088
Li H, Zhu Y, Morozov YM, Chen X, Page SC, Rannals MD et al (2019) Disruption of TCF4 regulatory networks leads to abnormal cortical development and mental disabilities. Mol Psychiatry. https://doi.org/10.1038/s41380-019-0353-0
Liu D, Yang C, Bojdani E, Murugan AK, Xing M (2013) Identification of RASAL1 as a major tumor suppressor gene in thyroid cancer. J Natl Cancer Inst 105:1617–1627. https://doi.org/10.1093/jnci/djt249
Louis DN, Perry A, Reifenberger G, von Deimling A, Figarella-Branger D, Cavenee WK et al (2016) The 2016 World Health Organization Classification of tumors of the central nervous system: a summary. Acta Neuropathol 131:803–820. https://doi.org/10.1007/s00401-016-1545-1
Love MI, Huber W, Anders S (2014) Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol 15:550. https://doi.org/10.1186/s13059-014-0550-8
Machold R, Fishell G (2005) Math1 is expressed in temporally discrete pools of cerebellar rhombic-lip neural progenitors. Neuron 48:17–24. https://doi.org/10.1016/j.neuron.2005.08.028
Mao J, Ligon KL, Rakhlin EY, Thayer SP, Bronson RT, Rowitch D et al (2006) A novel somatic mouse model to survey tumorigenic potential applied to the Hedgehog pathway. Cancer Res 66:10171–10178. https://doi.org/10.1158/0008-5472.Can-06-0657
Marangi G, Ricciardi S, Orteschi D, Lattante S, Murdolo M, Dallapiccola B et al (2011) The Pitt–Hopkins syndrome: report of 16 new patients and clinical diagnostic criteria. Am J Med Genet A 155A:1536–1545. https://doi.org/10.1002/ajmg.a.34070
Marangi G, Ricciardi S, Orteschi D, Tenconi R, Monica MD, Scarano G et al (2012) Proposal of a clinical score for the molecular test for Pitt–Hopkins syndrome. Am J Med Genet A 158a:1604–1611. https://doi.org/10.1002/ajmg.a.35419
Matsuoka S, Edwards MC, Bai C, Parker S, Zhang P, Baldini A et al (1995) p57KIP2, a structurally distinct member of the p21CIP1 Cdk inhibitor family, is a candidate tumor suppressor gene. Genes Dev 9:650–662
McLaren W, Gil L, Hunt SE, Riat HS, Ritchie GR, Thormann A et al (2016) The ensembl variant effect predictor. Genome Biol 17:122. https://doi.org/10.1186/s13059-016-0974-4
Merk DJ, Ohli J, Merk ND, Thatikonda V, Morrissy S, Schoof M et al (2018) Opposing effects of CREBBP mutations govern the phenotype of rubinstein–Taybi syndrome and adult SHH medulloblastoma. Dev Cell 44:709.e706–724.e706. https://doi.org/10.1016/j.devcel.2018.02.012
Moen MJ, Adams HH, Brandsma JH, Dekkers DH, Akinci U, Karkampouna S et al (2017) An interaction network of mental disorder proteins in neural stem cells. Transl Psychiatry 7:e1082. https://doi.org/10.1038/tp.2017.52
Mologni L, Dekhil H, Ceccon M, Purgante S, Lan C, Cleris L et al (2010) Colorectal tumors are effectively eradicated by combined inhibition of {beta}-catenin, KRAS, and the oncogenic transcription factor ITF2. Cancer Res 70:7253–7263. https://doi.org/10.1158/0008-5472.CAN-10-1108
Muller F, O’Rahilly R (1990) The human brain at stages 21–23, with particular reference to the cerebral cortical plate and to the development of the cerebellum. Anat Embryol (Berl) 182:375–400
Northcott PA, Buchhalter I, Morrissy AS, Hovestadt V, Weischenfeldt J, Ehrenberger T et al (2017) The whole-genome landscape of medulloblastoma subtypes. Nature 547:311–317. https://doi.org/10.1038/nature22973
Northcott PA, Jones DT, Kool M, Robinson GW, Gilbertson RJ, Cho YJ et al (2012) Medulloblastomics: the end of the beginning. Nat Rev Cancer 12:818–834. https://doi.org/10.1038/nrc3410
Northcott PA, Robinson GW, Kratz CP, Mabbott DJ, Pomeroy SL, Clifford SC et al (2019) Medulloblastoma. Nat Rev Dis Primers 5:11. https://doi.org/10.1038/s41572-019-0063-6
O’Donnell L, Soileau B, Heard P, Carter E, Sebold C, Gelfond J et al (2010) Genetic determinants of autism in individuals with deletions of 18q. Hum Genet 128:155–164. https://doi.org/10.1007/s00439-010-0839-y
Peippo M, Ignatius J (2011) Pitt-Hopkins syndrome. Mol Syndromol. https://doi.org/10.1159/000335287
Pugh TJ, Weeraratne SD, Archer TC, Pomeranz Krummel DA, Auclair D, Bochicchio J et al (2012) Medulloblastoma exome sequencing uncovers subtype-specific somatic mutations. https://doi.org/10.1038/nature11329
R Core Team (2014) R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. http://www.R-proje ct.org/
Ren X, Kuan PF (2018) methylGSA: a Bioconductor package and Shiny app for DNA methylation data length bias adjustment in gene set testing. Bioinformatics. https://doi.org/10.1093/bioinformatics/bty892
Rios I, Alvarez-Rodriguez R, Marti E, Pons S (2004) Bmp2 antagonizes sonic hedgehog-mediated proliferation of cerebellar granule neurones through Smad5 signalling. Development 131:3159–3168. https://doi.org/10.1242/dev.01188
Robinson G, Parker M, Kranenburg TA, Lu C, Chen X, Ding L et al (2012) Novel mutations target distinct subgroups of medulloblastoma. Nature 488:43–48. https://doi.org/10.1038/nature11213
Roussel MF, Hatten ME (2011) Cerebellum development and medulloblastoma. Curr Top Dev Biol 94:235–282. https://doi.org/10.1016/b978-0-12-380916-2.00008-5
Schüller U, Heine VM, Mao J, Kho AT, Dillon AK, Han YG et al (2008) Acquisition of granule neuron precursor identity is a critical determinant of progenitor cell competence to form Shh-induced medulloblastoma. Cancer Cell 14:123–134. https://doi.org/10.1016/j.ccr.2008.07.005
Sepp M, Kannike K, Eesmaa A, Urb M, Timmusk T (2011) Functional diversity of human basic helix-loop-helix transcription factor TCF4 isoforms generated by alternative 5′ exon usage and splicing. PLoS One 6:e22138. https://doi.org/10.1371/journal.pone.0022138
Sepp M, Pruunsild P, Timmusk T (2012) Pitt-Hopkins syndrome-associated mutations in TCF4 lead to variable impairment of the transcription factor function ranging from hypomorphic to dominant-negative effects. Hum Mol Genet 21:2873–2888. https://doi.org/10.1093/hmg/dds112
Skerjanc IS, Truong J, Filion P, McBurney MW (1996) A splice variant of the ITF-2 transcript encodes a transcription factor that inhibits MyoD activity. J Biol Chem 271:3555–3561
Soosaar A, Chiaramello A, Zuber MX, Neuman T (1994) Expression of basic-helix-loop-helix transcription factor ME2 during brain development and in the regions of neuronal plasticity in the adult brain. Brain Res Mol Brain Res 25:176–180
Spassky N, Han YG, Aguilar A, Strehl L, Besse L, Laclef C et al (2008) Primary cilia are required for cerebellar development and Shh-dependent expansion of progenitor pool. Dev Biol 317:246–259. https://doi.org/10.1016/j.ydbio.2008.02.026
Thaxton C, Kloth AD, Clark EP, Moy SS, Chitwood RA, Philpot BD (2018) Common pathophysiology in multiple mouse models of Pitt–Hopkins SYNDROME. J Neurosci 38:918–936. https://doi.org/10.1523/JNEUROSCI.1305-17.2017
Therneau T (2015) A package for survival analysis in S. Version 2.38. https://CRAN.R-project.org/package=survival
Waszak SM, Northcott PA, Buchhalter I, Robinson GW, Sutter C, Groebner S et al (2018) Spectrum and prevalence of genetic predisposition in medulloblastoma: a retrospective genetic study and prospective validation in a clinical trial cohort. Lancet Oncol 19:785–798. https://doi.org/10.1016/s1470-2045(18)30242-0
Whalen S, Heron D, Gaillon T, Moldovan O, Rossi M, Devillard F et al (2012) Novel comprehensive diagnostic strategy in Pitt-Hopkins syndrome: clinical score and further delineation of the TCF4 mutational spectrum. Hum Mutat 33:64–72. https://doi.org/10.1002/humu.21639
Zhao H, Ayrault O, Zindy F, Kim JH, Roussel MF (2008) Post-transcriptional down-regulation of Atoh1/Math1 by bone morphogenic proteins suppresses medulloblastoma development. Genes Dev 22:722–727. https://doi.org/10.1101/gad.1636408
Zhuo L, Theis M, Alvarez-Maya I, Brenner M, Willecke K, Messing A (2001) hGFAP-cre transgenic mice for manipulation of glial and neuronal function in vivo. Genesis 31:85–94
Zollino M, Zweier C, Van Balkom I, Sweetser DA, Alaimo J, Bijlsma EK et al (2019) Diagnosis and management in Pitt-Hopkins syndrome: first international consensus statement. Clin Genet. https://doi.org/10.1111/cge.13506
Zweier C, Peippo MM, Hoyer J, Sousa S, Bottani A, Clayton-Smith J et al (2007) Haploinsufficiency of TCF4 causes syndromal mental retardation with intermittent hyperventilation (Pitt-Hopkins syndrome). Am J Hum Genet 80:994–1001. https://doi.org/10.1086/515583
Zweier C, Sticht H, Bijlsma EK, Clayton-Smith J, Boonen SE, Fryer A et al (2008) Further delineation of Pitt-Hopkins syndrome: phenotypic and genotypic description of 16 novel patients. J Med Genet 45:738–744. https://doi.org/10.1136/jmg.2008.060129
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We thank Margarethe Gregersen, Michael Schmidt, and Anne Reichstein for excellent technical support. This study was supported by the German Cancer Aid, the Wilhelm Sander-Stiftung, the Kind-Philipp-Stiftung, the Burkhard Meyer Stiftung, and the Fördergemeinschaft Kinderkrebs-Zentrum Hamburg.
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Hellwig, M., Lauffer, M.C., Bockmayr, M. et al. TCF4 (E2-2) harbors tumor suppressive functions in SHH medulloblastoma. Acta Neuropathol 137, 657–673 (2019). https://doi.org/10.1007/s00401-019-01982-5
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DOI: https://doi.org/10.1007/s00401-019-01982-5