Abstract
To analyze the glucose repression mechanism in the thermotolerant yeast Kluyveromyces marxianus, disrupted mutants of genes for Mig1 and Rag5 as orthologs of Mig1 and Hxk2, respectively, in Saccharomyces cerevisiae were constructed, and their characteristics were compared with those of the corresponding mutants of S. cerevisiae. MIG1 mutants of both yeasts exhibited more resistance than the corresponding parental strains to 2-deoxyglucose (2-DOG). Histidine was found to be essential for the growth of Kmmig1, but not that of Kmrag5, suggesting that MIG1 is required for histidine biosynthesis in K. marxianus. Moreover, Kmrag5 and Schxk2 were more resistant than the corresponding MIG1 mutant to 2-DOG, and only the latter increased the utilization speed of sucrose in the presence of glucose. Kmrag5 exhibited very low activities for gluco-hexokinase and hexokinase and, unlike Schxk2, showed very slow growth and a low level of ethanol production in a glucose medium. Furthermore, Kmrag5, but not Kmmig1, exhibited high inulinase activity in a glucose medium and exhibited greatly delayed utilization of accumulated fructose in the medium containing both glucose and sucrose. Transcription analysis revealed that the expression levels of INU1 for inulinase and GLK1 for glucokinase in Kmrag5 were higher than those in the parental strain; the expression level of INU1 in Kmmig1 was higher, but the expression levels of RAG1 for a low-affinity glucose transporter in Kmmig1 and Kmrag5 were lower. These findings suggest that except for regulation of histidine biosynthesis, Mig1 and Rag5 of K. marxianus play similar roles in the regulation of gene expression and share some functions with Mig1 and Hxk2, respectively, in S. cerevisiae.
Similar content being viewed by others
References
Abdel-Banat BMA, Nonklang S, Hoshida H, Akada R (2010) Random and targeted gene integrations through the control of non-homologous end joining in the yeast Kluyveromyces marxianus. Yeast 27:29–39. https://doi.org/10.1002/yea.1729
Ahuatzi D, Riera A, Peláez R, Herrero P, Moreno F (2007) Hxk2 regulates the phosphorylation state of Mig1 and therefore its nucleocytoplasmic distribution. J Biol Chem 282(7):4485–4493. https://doi.org/10.1074/jbc.M606854200
Ahuatzi D, Herrero P, de la Ceras T, Moreno F (2004) The glucose-regulated nuclear localization of hexokinase 2 in Saccharomyces cerevisiae is Mig1-dependent. J Biol Chem 279(14):14440–14446. https://doi.org/10.1074/jbc.M313431200
Aiba H, Adhya S, de Crombrugghe B (1981) Evidence for two functional gal promoters in intact Escherichia coli cells. J Biol Chem 256(22):11905–11910
Bergdahl B, Sandstrom AG, Borgstrom C, Boonyawan T, van Niel EWJ, Gorwa-Grauslund MF (2013) Engineering yeast hexokinase 2 for improved tolerance toward xylose-induced inactivation. PLoS One 8(9):e750555: 1–10. https://doi.org/10.1371/journal.pone.0075055
Betina S, Goffrini P, Ferrero I, Wesolowski-Louvel M (2001) RAG4 gene encodes a glucose sensor in Kluyveromyces lactis. Genetics 158:541–548
Brachmann CB, Davies A, Cost GJ, Caputo E, Li J, Hieter P, Boeke JD (1998) Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications. Yeast 14(2):115–132. https://doi.org/10.1002/(SICI)1097-0061(19980130)14:2<115::AID-YEA204>3.0.CO;2-2
Caceres AJ, Portillo R, Acosta H, Rosales D, Quinones W, Avilan L, Salazar L, Dubourdieu M, Michels PA, Concepcion JL (2003) Molecular and biochemical characterization of hexokinase from Trypanosoma cruzi. Mol Biochem Parasitol 126:251–262. https://doi.org/10.1016/S0166-6851(02)00294-3
Chai-am K, Fukunaga T, Hoshida H, Akada R (2009) Reliable fusion PCR mediated by GC-rich overlap sequences. Gene 434:43–49. https://doi.org/10.1016/j.gene.2008.12.014
Chen W, Guéron M (1992) The inhibition of bovine heart hexokinase by 2-deoxy-D-glucose-6-phosphate: characterization by 31P NMR and metabolic implications. Biochimie 74:867–873
Entian KD, Barnett JA (1992) Regulation of sugar utilization by Saccharomyces cerevisiae. Elsevier Science Publishers, London
Fonseca GG, Heinzle E, Wittmann C, Gombert AK (2008) The yeast Kluyveromyces marxianus and its biotechnological potential. Appl Microbiol Biotechnol 79:339–354. https://doi.org/10.1007/s00253-008-1458-6
Gancedo JM, Gancedo C (1986) Catabolite repression mutants of yeast (catabolite repression; Saccharomyces cerevisiae; yeast mutants). FEMS Microbiol Rev 32:179–187. https://doi.org/10.1111/j.1574-6968.1986.tb01192.x
Gethins L, Guneser O, Demirkol A, Rea MC, Stanton C, Ross RP, Yuceer Y, Momissey JP (2014) Influence of carbon and nitrogen sources on production of volatile fragrance and flavour metabolites by the yeast Kluyveromyces marxianus. Yeast 3047. doi: https://doi.org/10.1002/yea.3047
Gietz RD, Schiestl RH (2007) High-efficiency yeast transformation using the LiAc/SS carrier DNA/PEG method. Nat Protoc 2:31–34. https://doi.org/10.1038/nprot.2007.13
Goshima T, Tsuji M, Inoue H, Yano S, Hoshino T, Matsushika A (2013) Bioethanol production from lignocellulosic biomass by a novel Kluyveromyces marxianus strain. Biosci Biotechnol Biochem 77:1505–1510. https://doi.org/10.1271/bbb.130173
Guldener U, Heck S, Fiedler T, Beinhauer J, Hegemann JH (1996) A new efficient gene disruption cassette for repeated use in budding yeast. Nucleic Acids Res 24(13):2519–2524. https://doi.org/10.1093/nar/24.13.2519
Guldener U, Heinisch J, Koehler GJ, Voss D, Hegemann JH (2002) A second set of loxP marker cassettes for Cre-mediated multiple gene knockouts in budding yeast. Nucleic Acids Res 30(6):e23. https://doi.org/10.1093/nar/30.6.e23
Hamacher T, Becker J, Gardonyi M, Hanh-Hagerdal B, Boles E (2002) Characterization of the xylose-transporting properties of yeast hexose transporters and their influence on xylose utilization. Microbiology 148:2783–2788. https://doi.org/10.1099/00221287-148-9-2783
Kango N, Jain SC (2011) Production and properties of microbial inulinases:recent advances. Food Biotechnol 25(3):165–212. https://doi.org/10.1080/08905436.2011.590763
Lertwattanasakul N, Sootsuwan K, Limtong S, Thanonkeo P, Yamada M (2007) Comparison of the gene expression pattern of alcohol dehydrogenase isozymes in the thermotolerant yeast Kluyveromyces marxianus and their physiological functions. Biosci Biotechnol Biochem 71(5):1170–1182. https://doi.org/10.1271/bbb.60622
Lertwattanasakul N, Rodrussamee N, Suprayogi, Limtong S, Thanonkeo P, Kosaka T, Yamada M (2011) Utilization capability of sucrose, raffinose and inulin and its less-sensitiveness to glucose repression in thermotolerant yeast Kluyveromyces marxianus DMKU3-1042. AMB Express 1:20. https://doi.org/10.1186/2191-0855-1-20
Lertwattanasakul N, Suprayogi, Murata M, Rodrussamee N, Limtong S, Kosaka T, Yamada M (2013) Essentiality of respiratory activity for pentose utilization in thermotolerant yeast Kluyveromyces marxianus DMKU3-1042. Antonie Leeuwenhoek 103:933–945. https://doi.org/10.1007/s10482-012-9874-0
Lertwattanasakul N, Kosaka T, Hosoyama A, Suzuki Y, Rodrussamee N, Matsutani M, Murata M, Fujimoto N, Suprayogi, Tsuchikane K, Limtong S, Fujita N, Yamada M (2015) Genetic basis of the highly efficient yeast Kluyveromyces marxianus: complete genome sequence and trancriptome analyses. Bitoechnol biofuels 8:47. https://doi.org/10.1186/s13068-015-0227-x
Limtong S, Sringiew C, Yongmanitchai W (2007) Production of fuel ethanol at high temperature from sugar cane juice by a newly isolated Kluyveromyces marxianus. Bioresour Technol 98:3367–3374. https://doi.org/10.1016/j.biortech.2006.10.044
Lin X, Zhang C, Bai X, Song H, Xiao D (2014) Effects of MIG1, TUP1 and SSN6 deletion on maltose metabolism and leavening ability of baker’s yeast in lean dough. Microb Cell Factories 13:93. https://doi.org/10.1186/s12934-014-0093-4
Lowry OH, Rosebrough NJ, Farr AL, Randall RJ (1951) Protein measurement with the Folin phenol reagent. J Biol Chem 193:265–275
Matsuzaki C, Nakagawa A, Koyanagi T, Tanaka K, Minami H, Tamaki H, Katayama T, Yamamoto K, Kumagai H (2012) Kluyveromyces marxianus-based platform for direct ethanol fermentation and recovery from cellulosic materials under air-ventilated conditions. J Biosci Bioeng 113:604–607. https://doi.org/10.1016/j.jbiosc.2011.12.007
Miller GL (1959) Use of dinitrosalicylic acid reagent for determination of reducing sugar. Anal Chem 31(3):426–428. https://doi.org/10.1021/ac60147a030
Nehlin JO, Ronne H (1990) Yeast MIG1 repressor is related to the mammalian early growth response and Wilms’ tumour finger proteins. EMBO J 9(9):2891–2898
Nolleau V, Preziosi-Belloy L, Delgenes JP, Navarro JM (1993) Xylitol production from xylose by two yeast strains:sugar tolerance. Curr Microbiol 27:191–197
Ozcan S, Johnston M (1995) Three different regulatory mechanisms enable yeast hexose transporter (HXT) genes to be induced by different levels of glucose. Mol Cell Biol 15(3):1564–1572. https://doi.org/10.1128/MCB.15.3.1564
Pagliaro M, Ciriminna R, Kimura H, Rossi M, Pina CD (2007) From glycerol to value-added products. Angew Chem Int Ed 46:4434–4440. https://doi.org/10.1002/anie.200604694
Pelaez R, Herrero P, Moreno F (2010) Functional domains of yeast hexokinase 2. Biochem J 432:181–190. https://doi.org/10.1042/BJ20100663
Prior C, Mamessier P, Fukuhara H, Chen XJ, Wesolowski-Louvel M (1993) The hexokinase gene is required for transcriptional regulation of the glucose transporter gene RAG1 in Kluyveromyces lactis. Mol Cell Biol 13(7):3882–3889. https://doi.org/10.1128/MCB.13.7.3882
Rodrussamee N, Lertwattanasakul N, Hirata K, Suprayogi, Limtong S, Kosaka T, Yamada M (2011) Growth and ethanol fermentation ability on hexose and pentose sugars and glucose effect under various conditions in thermotolerant yeast Kluyveromyces marxianus. Appl Microbiol Biotechnol 90:1573–1586. https://doi.org/10.1007/s00253-011-3218-2
Rose M, Albig W, Entian KD (1991) Glucose repression in Saccharomyces cerevisiae is directly associated with hexokinase phosphorylation by hexokinases PI and PII. Eur J Biochem FEBS 199:511–518. https://doi.org/10.1111/j.1432-1033.1991.tb16149.x
Rouwenhorst RJ, Visser LE, Van der Baan AA, Scheffers A, Van Dijken JP (1988) Production, distribution, and kinetic properties of inulinase in continuous cultures of Kluyveromyces marxianus CBS 6556. Appl Environ Microbiol 54(5):1131–1137
Sambrook J, Russell DW (2001) Molecular cloning a laboratory manual, vol 3, 3rd edn. Cold Spring Harbor Laboratory Press, New York
Sols A, Crane RK (1954) Substrate specificity of brain hexokinase. J Biol Chem 210:581–595
Sootsuwan K, Irie A, Murata M, Lertwattanasakul N, Thanonkeo P, Yamada M (2007) Thermotolerant Zymomonas mobilis: comparison of ethanol fermentation capability with that of an efficient type strain. Open Biotech J 1:59–65
Sun X, Zhang C, Dong J, Wu M, Zhang Y, Xiao D (2012) Enhanced leavening properties of baker’s yeast overexpressing MAL62 with the deletion of MIG1 in lean dough. J Ind Microbiol Biotechnol 39:1533–1539
Suprayogi, Nguyen MT, Lertwattanasakul N, Rodrussamee N, Limtong S, Kosaka T, Yamada M (2015) A Kluyveromyces marxianus 2-deoxyglucose-resistant mutant with enhanced activity of xylose utilization. Int Microbiol 18:235–244. https://doi.org/10.2436/20.1501.01.255
Suprayogi, Nurcholis M, Murata M, Lertawattanasakul N, Kosaka T, Rodrussamee N, Yamada M (2016) Characteristics of kanMX4-inserted mutants that exhibit 2-deoxyglucose resistance in thermotolerance yeast Kluyveromyces marxianus. Open Biotech J 10:208–222. https://doi.org/10.2174/18740707016100100208
Vega M, Riera A, Fernandez-Cid A, Herrero P, Moreno F (2016) Hexokinase 2 is an intracellular glucose sensor of yeast cells that maintains the structure and activity of Mig1 protein repressor complex. J Biol Chem 291(14):7267–7285. https://doi.org/10.1074/jbc.M115.711408
Wick AN, Drury DR, Nakada HI, Wolfe JB (1957) Localization of the primary metabolic block produced by 2-deoxyglucose. J Biol Chem 224:963–969
Zhang G, Lu M, Wang J, Wang D, Gao X, Hong J (2017) Identification of hexose kinase genes in Kluyveromyces marxianus and thermo-tolerant one step producing glucose-free fructose strain construction. Sci Rep 7:45104. https://doi.org/10.1038/srep45104
Zhou HX, Xu JL, Chi Z, Liu GL, Chi ZM (2013) β-Galactosidase over-production by a mig1 mutant of Kluyveromyces marxianus KM for efficient hydrolysis of lactose. Biochem Eng J 76:17–24. https://doi.org/10.1016/j.bej.2013.04.010
Zhou HX, Xin FH, Chi Z, Liu GL, Chi ZM (2014) Inulinase production by the yeast Kluyveromyces marxianus with the disrupted MIG1 gene and the over-expressed inulinase gene. Process Biochem 49:1867–1874. https://doi.org/10.1016/j.procbio.2014.08.001
Zou J, Guo X, Dong J, Zhang C, Xiao D (2015) Effect of MIG1 gene deletion on lactose utilization in Lac+ Saccharomyces cerevisiae engineering strains. Adv Appl Biotechnol 333:143–151
Acknowledgments
We thank K. Matsushita and T. Yakushi for their helpful discussion.
Funding
The Govermment of Indonesia gave financial support (to M. N) through BPPLN-DIKTI Scholarship, Ministry of Research, Technology, and Higher Education. This work was supported by The Core to Core Program A. Advanced Research Networks, which was granted by the Japan Society for the Promotion of Science, the National Research Council of Thailand, Ministry of Science and Technology in Vietnam, National Univ. of Laos, Univ. of Brawijaya, and Beuth Univ. of Applied Science Berlin and was also supported by the Program for Promotion of Basic Research Activities for Innovative Biosciences, NEDO, Special coordination and by Japan Science and Technology Agency, Ministry of Research, Technology and Higher Education of the Republic of Indonesia, Agricultural Research Development Agency of Thailand and Ministry of Science and Technology of Laos as part of the e-ASIA Joint Research Program (e-ASIA JRP).
Author information
Authors and Affiliations
Contributions
MN obtained and carried out characterization of MIG1 and RAG5 disrupted mutants and performed enzyme assay, gene expression, and writing the manuscript. SN was involved in construction of MIG1 and RAG5 disrupted mutants. S was involved in obtaining mutant no. 23. SL isolated K. marxianus DMKU 3-1042. NR, NL, and TK were participated in discussion of the study. MY was contributed in the experimental design and discussion for writing the manuscript. All authors read and approved the final manuscript.
Corresponding author
Ethics declarations
Conflict of interest
The authors declare that they have no conflict of interest.
Ethical statement
This article does not contain any studies with human participants or animals performed by any of the authors.
Electronic supplementary material
ESM 1
(PDF 539 kb)
Rights and permissions
About this article
Cite this article
Nurcholis, M., Nitiyon, S., Suprayogi et al. Functional analysis of Mig1 and Rag5 as expressional regulators in thermotolerant yeast Kluyveromyces marxianus. Appl Microbiol Biotechnol 103, 395–410 (2019). https://doi.org/10.1007/s00253-018-9462-y
Received:
Revised:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00253-018-9462-y