Abstract
The chloride intracellular channel protein 1 (CLIC1) is unique among eukaryotic ion channels in that it can exist as either a soluble monomer or an integral membrane channel. CLIC1 contains no known membrane-targeting signal sequences and the environmental factors which promote membrane binding of the transmembrane domain (TMD) are poorly understood. Here we report a positively charged motif at the C-terminus of the TMD and show that it enhances membrane partitioning and insertion. A 30-mer TMD peptide was synthesized in which the positively charged motif was replaced by three glutamate residues. The peptide was examined in 2,2,2-trifluoroethanol (TFE), sodium dodecyl sulfate micelles and 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine liposomes using size-exclusion chromatography, far-UV CD, and fluorescence spectroscopy. The motif appears to enhance membrane interaction via electrostatic contacts and functions as an electrostatic plug to anchor the TMD in membranes. In addition, the motif is also involved in orientating the TMD with respect to the cis and trans faces of the membrane. These findings shed light on the intrinsic and environmental factors that promote the spontaneous conversion of CLIC1 from a water-soluble to a membrane-bound protein.
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Abbreviations
- CD:
-
Circular dichroism
- CLIC1:
-
Chloride intracellular channel protein 1
- DTNB:
-
5,5′-Dithio-2-nitrobenzoic acid
- DTT:
-
Dithiothreitol
- EEE TMD:
-
Transmembrane domain of CLIC1 containing Glu49-Glu50-Glu51
- λ max :
-
Emission maximum wavelength
- NATA:
-
N-Acetyl-tryptophanamide
- NLS:
-
Nuclear localization sequence of CLIC4
- NRMSD:
-
Normalized root mean square deviation
- POPC:
-
1-Palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine
- SDS:
-
Sodium dodecyl sulfate
- TFE:
-
2,2,2-Trifluoroethanol
- TMD:
-
Transmembrane domain of CLIC1 (residues 24–46)
References
Barrera FN, Fendos J, Engelman DM (2012) Membrane physical properties influence transmembrane helix formation. Proc Natl Acad Sci USA 109:14422–14427
Ben-Tal N, Honig B, Miller C, McLaughlin S (1997) Electrostatic binding of proteins to membranes. Theoretical predictions and experimental results with charybdotoxin and phospholipid vesicles. Biophys J 73:1717–1727
Dewald AH, Hodges JC, Columbus L (2011) Physical determinants of beta-barrel membrane protein folding in lipid vesicles. Biophys J 100:2131–2140
Fanucchi S, Adamson RJ, Dirr HW (2008) Formation of an unfolding intermediate state of soluble chloride intracellular channel protein CLIC1 at acidic pH. Biochemistry 47:11674–11681
Gafvelin G, Sakaguchi M, Andersson H, von Heijne G (1997) Topological rules for membrane protein assembly in eukaryotic cells. J Biol Chem 272:6119–6127
Gallusser A, Kuhn A (1990) Initial steps in protein membrane insertion. Bacteriophage M13 procoat protein binds to the membrane surface by electrostatic interaction. EMBO J 9:2723–2729
Goodchild SC, Howell MW, Cordina NM, Littler DR, Breit SN, Curmi PM, Brown LJ (2009) Oxidation promotes insertion of the CLIC1 chloride intracellular channel into the membrane. Eur Biophys J 39:129–138
Granseth E, von Heijne G, Elofsson A (2005) A study of the membrane–water interface region of membrane proteins. J Mol Biol 346:377–385
Habeeb AF (1972) Reaction of protein sulfhydryl groups with Ellman’s reagent. Methods Enzymol 25C:457–464
Heimburg T, Marsh D (1995) Protein surface-distribution and protein–protein interactions in the binding of peripheral proteins to charged lipid membranes. Biophys J 68:536–546
Hendsch ZS, Tidor B (1994) Do salt bridges stabilize proteins? A continuum electrostatic analysis. Protein Sci 3:211–226
Honig BH, Hubbell WL, Flewelling RF (1986) Electrostatic interactions in membranes and proteins. Annu Rev Biophys Biophys Chem 15:163–193
Johnson JE, Cornell RB (1999) Amphitropic proteins: regulation by reversible membrane interactions (review). Mol Membr Biol 16:217–235
Langosch D, Arkin IT (2009) Interaction and conformational dynamics of membrane-spanning protein helices. Protein Sci 18:1343–1358
Legg-E'silva D, Achilonu I, Fanucchi S, Stoychev S, Fernandes M, Dirr HW (2012) Role of Arginine 29 and Glutamic Acid 81 Interactions in the Conformational Stability of Human Chloride Intracellular Channel 1. Biochem 51(40):7854–7862
Littler DR, Harrop SJ, Fairlie WD, Brown LJ, Pankhurst GJ, Pankhurst S, DeMaere MZ, Campbell TJ, Bauskin AR, Tonini R et al (2004) The intracellular chloride ion channel protein CLIC1 undergoes a redox-controlled structural transition. J Biol Chem 279:9298–9305
Malik M, Shukla A, Amin P, Niedelman W, Lee J, Jividen K, Phang JM, Ding J, Suh KS, Curmi PM et al (2010) S-nitrosylation regulates nuclear translocation of chloride intracellular channel protein CLIC4. J Biol Chem 285:23818–23828
Manceva SD, Pusztai-Carey M, Butko P (2004) Effect of pH and ionic strength on the cytolytic toxin Cyt1A: a fluorescence spectroscopy study. Biochim Biophys Acta 1699:123–130
McLaughlin S, Murray D (2005) Plasma membrane phosphoinositide organization by protein electrostatics. Nature 438:605–611
McLaughlin S, Hangyas-Mihalyne G, Zaitseva I, Golebiewska U (2005) Reversible—through calmodulin: electrostatic interactions between basic residues on proteins and acidic lipids in the plasma membrane. Biochem Soc Symp 72:189–198
Mishra VK, Palgunachari MN (1996) Interaction of model class A1, class A2, and class Y amphipathic helical peptides with membranes. Biochemistry 35:11210–11220
Mulgrew-Nesbitt A, Diraviyam K, Wang J, Singh S, Murray P, Li Z, Rogers L, Mirkovic N, Murray D (2006) The role of electrostatics in protein-membrane interactions. Biochim Biophys Acta 1761:812–826
Mynott AV, Harrop SJ, Brown LJ, Breit SN, Kobe B, Curmi PM (2011) Crystal structure of importin-alpha bound to a peptide bearing the nuclear localisation signal from chloride intracellular channel protein 4. FEBS J 278:1662–1675
Nilsson J, Persson B, von Heijne G (2005) Comparative analysis of amino acid distributions in integral membrane proteins from 107 genomes. Proteins 60:606–616
Olivella M, Deupi X, Govaerts C, Pardo L (2002) Influence of the environment in the conformation of alpha-helices studied by protein database search and molecular dynamics simulations. Biophys J 82:3207–3213
Pace CN, Scholtz JM (1998) A helix propensity scale based on experimental studies of peptides and proteins. Biophys J 75:422–427
Peter B, Ngubane NC, Fanucchi S, Dirr HW (2013) Membrane mimetics induce helix formation and oligomerization of the chloride intracellular channel protein 1 transmembrane domain. Biochemistry 52:2739–2749
Peter B, Polyansky AA, Fanucchi S, Dirr HW (2014) A Lys-Trp cation-pi interaction mediates the dimerization and function of the chloride intracellular channel protein 1 transmembrane domain. Biochemistry 53:57–67
Popot JL, Engelman DM (1990) Membrane protein folding and oligomerization: the two-stage model. Biochemistry 29:4031–4037
Roccatano D, Colombo G, Fioroni M, Mark AE (2002) Mechanism by which 2,2,2-trifluoroethanol/water mixtures stabilize secondary-structure formation in peptides: a molecular dynamics study. Proc Natl Acad Sci U S A 99:12179–12184
Singh H, Ashley RH (2007) CLIC4 (p64H1) and its putative transmembrane domain form poorly selective, redox-regulated ion channels. Mol Membr Biol 24:41–52
Smith SO, Smith CS, Bormann BJ (1996) Strong hydrogen bonding interactions involving a buried glutamic acid in the transmembrane sequence of the neu/erbB-2 receptor. Nat Struct Biol 3:252–258
Sreerama N, Woody RW (2000) Estimation of protein secondary structure from circular dichroism spectra: comparison of CONTIN, SELCON, and CDSSTR methods with an expanded reference set. Anal Biochem 287:252–260
Stoychev SH, Nathaniel C, Fanucchi S, Brock M, Li S, Asmus K, Woods VL Jr, Dirr HW (2009) Structural dynamics of soluble chloride intracellular channel protein CLIC1 examined by amide hydrogen-deuterium exchange mass spectrometry. Biochemistry 48:8413–8421
Suh KS, Mutoh M, Nagashima K, Fernandez-Salas E, Edwards LE, Hayes DD, Crutchley JM, Marin KG, Dumont RA, Levy JM et al (2004) The organellular chloride channel protein CLIC4/mtCLIC translocates to the nucleus in response to cellular stress and accelerates apoptosis. J Biol Chem 279:4632–4641
van Klompenburg W, Nilsson I, von Heijne G, de Kruijff B (1997) Anionic phospholipids are determinants of membrane protein topology. EMBO J 16:4261–4266
von Heijne G (1984) Analysis of the distribution of charged residues in the N-terminal region of signal sequences: implications for protein export in prokaryotic and eukaryotic cells. EMBO J 3:2315–2318
von Heijne G, Gavel Y (1988) Topogenic signals in integral membrane proteins. Eur J Biochem 174:671–678
Wallach DF, Zahler PH (1966) Protein conformations in cellular membranes. Proc Natl Acad Sci U S A 56:1552–1559
Wallin E, von Heijne G (1995) Properties of N-terminal tails in G-protein coupled receptors: a statistical study. Protein Eng 8:693–698
Warton K, Tonini R, Fairlie WD, Matthews JM, Valenzuela SM, Qiu MR, Wu WM, Pankhurst S, Bauskin AR, Harrop SJ et al (2002) Recombinant CLIC1 (NCC27) assembles in lipid bilayers via a pH-dependent two-state process to form chloride ion channels with identical characteristics to those observed in Chinese hamster ovary cells expressing CLIC1. J Biol Chem 277:26003–26011
White SH, Wimley WC (1999) Membrane protein folding and stability: physical principles. Annu Rev Biophys Biomol Struct 28:319–365
Xia XF, Sui SF (2000) The membrane insertion of trichosanthin is membrane-surface-pH dependent. Biochem J 349(Pt 3):835–841
Xu D, Lin SL, Nussinov R (1997) Protein binding versus protein folding: the role of hydrophilic bridges in protein associations. J Mol Biol 265:68–84
Acknowledgments
This work was supported by the University of the Witwatersrand, South African National Research Foundation Grant 68898 to H.W.D and South African Research Chairs Initiative of the Department of Science and Technology and National Research Foundation (Grant 64788 to H.W.D). Any opinion, findings, and conclusions or recommendations expressed in this material are those of the author(s) and therefore the National Research Foundation and the Department of Science and Technology do not accept any liability with regard thereto.
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Peter, B., Fanucchi, S. & Dirr, H.W. A conserved cationic motif enhances membrane binding and insertion of the chloride intracellular channel protein 1 transmembrane domain. Eur Biophys J 43, 405–414 (2014). https://doi.org/10.1007/s00249-014-0972-y
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DOI: https://doi.org/10.1007/s00249-014-0972-y