Abstract
In this study, the responses of soil bacterial communities to biochar amendment in different soils were investigated. Biochar amendment had not significantly changed the bacterial richness and diversity in black soil, fluvo-aquic soil and red soil, but shifted all the soil bacterial community structures. Biochar amendment mainly increased the growth of low-abundance bacteria in fluvo-aquic soil and that of high-abundance bacteria in red soil. The most abundant bacterial phylum in black soil and fluvo-aquic soil, Proteobacteria, increased after biochar addition, while Chloroflexi, the most abundant phylum in red soil, decreased after biochar addition. Some bacterial phyla responded consistently to biochar amendment. However, many more bacterial phyla responded differently to biochar amendment in different soils, especially those phyla present at low abundances. Therefore, our study confirmed that the responses of soil bacterial communities to the same biochar were specific to both soil type and bacterial phylum.
Similar content being viewed by others
References
Abujabhah IS, Bound SA, Doyle R et al (2016) Effects of biochar and compost amendments on soil physico-chemical properties and the total community within a temperate agricultural soil. Appl Soil Ecol 98:243–253
Ahmad M, Rajapaksha AU, Lim JE et al (2014) Biochar as a sorbent for contaminant management in soil and water: a review. Chemosphere 99:19–33
Anderson CR, Condron LM, Clough TJ et al (2011) Biochar induced soil microbial community change: implications for biogeochemical cycling of carbon, nitrogen and phosphorus. Pedobiologia 54:309–320
Bääth E, Frostegärd A, Pennanen T et al (1995) Microbial community structure and pH response in relation to soil organic-matter quality in wood-ash fertilized, clear-cut or burned coniferous forest soils. Soil Biol Biochem 27:229–240
Beesley L, Moreno-Jimenez E, Gomez-Eyles JL et al (2011) A review of biochars' potential role in the remediation, revegetation and restoration of contaminated soils. Environ Pollut 159:3269–3282
Chen JH, Liu XY, Li LQ et al (2015) Consistent increase in abundance and diversity but variable change in community composition of bacteria in topsoil of rice paddy under short term biochar treatment across three sites from South China. Appl Soil Ecol 91:68–79
Cheng Y, Cai ZC, Chang SX et al (2012) Wheat straw and its biochar have contrasting effects on inorganic N retention and N2O production in a cultivated Black Chernozem. Biol Fert Soils 48:941–946
Curtin D, Rostad HPW (1997) Cation exchange and buffer potential of Saskatchewan soils estimated from texture, organic matter and pH. Can J Soil Sci 77:621–626
Dixon P (2003) VEGAN, a package of R functions for community ecology. J Veg Sci 14:927–930
Fang HHP, Liang DW, Zhang T et al (2006) Anaerobic treatment of phenol in wastewater under thermophilic condition. Water Res 40:427–434
Fierer N, Jackson RB (2006) The diversity and biogeography of soil bacterial communities. Proc Nat Acad Sci USA 103:626–631
Fierer N, Bradford MA, Jackson RB (2007) Toward an ecological classification of soil bacteria. Ecology 88:1354–1364
Griffiths BS, Philippot L (2013) Insights into the resistance and resilience of the soil microbial community. FEMS Microbiol Rev 37:112–129
Griffiths BS, Bonkowski M, Roy J et al (2001) Functional stability, substrate utilisation and biological indicators of soils following environmental impacts. Appl Soil Ecol 16:49–61
Gul S, Whalen JK, Thomas BW et al (2015) Physico-chemical properties and microbial responses in biochar-amended soils: mechanisms and future directions. Agric Ecosyst Environ 206:46–59
Hale L, Luth M, Crowley D (2015) Biochar characteristics relate to its utility as an alternative soil inoculum carrier to peat and vermiculite. Soil Biol Biochem 81:228–235
Hollister EB, Engledow AS, Hammett AJM et al (2010) Shifts in microbial community structure along an ecological gradient of hypersaline soils and sediments. ISME J 4:829–838
Hu L, Cao LX, Zhang RD (2014) Bacterial and fungal taxon changes in soil microbial community composition induced by short-term biochar amendment in red oxidized loam soil. World J Microbiol Biotechnol 30:1085–1092
Imparato V, Hansen V, Santos SS et al (2016) Gasification biochar has limited effects on functional and structural diversity of soil microbial communities in a temperate agroecosystem. Soil Biol Biochem 99:128–136
Khodadad CLM, Zimmerman AR, Green SJ et al (2011) Taxa-specific changes in soil microbial community composition induced by pyrogenic carbon amendments. Soil Biol Biochem 43:385–392
Kim JS, Sparovek G, Longo RM et al (2007) Bacterial diversity of terra preta and pristine forest soil from the Western Amazon. Soil Biol Biochem 39:684–690
Kolb SE, Fermanich KJ, Dornbush ME (2009) Effect of charcoal quantity on microbial biomass and activity in temperate soils. Soil Sci Soc Am J 73:1173–1181
Lehmann J (2007) A handful of carbon. Nature 447:143–144
Lehmann J, Rillig MC, Thies J et al (2011) Biochar effects on soil biota—a review. Soil Biol Biochem 43:1812–1836
Lehmann J, Kuzyakov Y, Pan G et al (2015) Biochars and the plant-soil interface. Plant Soil 395:1–5
Liu YX, Yang M, Wu YM et al (2011) Reducing CH4 and CO2 emissions from waterlogged paddy soil with biochar. J Soils Sediments 11:930–939
Liu W, Wang ST, Lin P et al (2016) Response of CaCl2-extractable heavy metals, polychlorinated biphenyls, and microbial communities to biochar amendment in naturally contaminated soils. J Soils Sediments 16:476–485
Macdonald LM, Farrell M, Van Zwieten L et al (2014) Plant growth responses to biochar addition: an Australian soils perspective. Biol Fertil Soils 50:1035–1045
Mackie KA, Marhan S, Ditterich F et al (2015) The effects of biochar and compost amendments on copper immobilization and soil microorganisms in a temperate vineyard. Agric Ecosyst Environ 201:58–69
Mao JD, Johnson RL, Lehmann J et al (2012) Abundant and stable char residues in soils: implications for soil fertility and carbon sequestration. Environ Sci Technol 46:9571–9576
Muhammad N, Dai Z, Xiao K et al (2014) Changes in microbial community structure due to biochars generated from different feedstocks and their relationships with soil chemical properties. Geoderma 226:270–278
Novak JM, Cantrell KB, Watts DW et al (2014) Designing relevant biochars as soil amendments using lignocellulosic-based and manure-based feedstocks. J Soils Sediments 14:330–343
O'Neill B, Grossman J, Tsai MT et al (2009) Bacterial community composition in Brazilian anthrosols and adjacent soils characterized using culturing and molecular identification. Microb Ecol 58:23–35
Parks DH, Tyson GW, Hugenholtz P et al (2014) STAMP: statistical analysis of taxonomic and functional profiles. Bioinformatics 30:3123–3124
Pazos F, Valencia A, De Lorenzo V (2003) The organization of the microbial biodegradation network from a systems-biology perspective. EMBO Rep 4:994–999
Rousk J, Baath E, Brookes PC et al (2010) Soil bacterial and fungal communities across a pH gradient in an arable soil. ISME J 4:1340–1351
Shen CC, Xiong JB, Zhang HY et al (2013) Soil pH drives the spatial distribution of bacterial communities along elevation on Changbai Mountain. Soil Biol Biochem 57:204–211
Sohi SP, Krull E, Lopez-Capel E et al (2010) A review of biochar and its use and function in soil. Adv Agron 105:47–82
Song Y, Wang F, Bian YR et al (2012) Bioavailability assessment of hexachlorobenzene in soil as affected by wheat straw biochar. J Hazard Mater 217–218:391–397
Srinivasan S, Hoffman NG, Morgan MT et al (2012) Bacterial communities in women with bacterial vaginosis: high resolution phylogenetic analyses reveal relationships of microbiota to clinical criteria. PLoS ONE 7:e37818
Sun D, Meng J, Xu EG et al (2016) Microbial community structure and predicted bacterial metabolic functions in biochar pellets aged in soil after 34 months. Appl Soil Ecol 100:135–143
Taketani RG, Lima AB, Jesus EC et al (2013) Bacterial community composition of anthropogenic biochar and Amazonian anthrosols assessed by 16S rRNA gene 454 pyrosequencing. Antonie Van Leeuwenhoek Int J Gen Mol Microbiol 104:233–242
Tian J, Wang JY, Dippold M et al (2016) Biochar affects soil organic matter cycling and microbial functions but does not alter microbial community structure in a paddy soil. Sci Total Environ 556:89–97
Wu JH, Liu WT, Tseng IC et al (2001) Characterization of microbial consortia in a terephthalate-degrading anaerobic granular sludge system. Microbiology 147:373–382
Xu HJ, Wang XH, Li H et al (2014) Biochar impacts soil microbial community composition and nitrogen cycling in an acidic soil planted with rape. Environ Sci Technol 48:9391–9399
Xu N, Tan GC, Wang HY et al (2016) Effect of biochar additions to soil on nitrogen leaching, microbial biomass and bacterial community structure. Eur J Soil Biol 74:1–8
Xu M, Xia HX, Wu J et al (2017) Shifts in the relative abundance of bacteria after wine-lees-derived biochar intervention in multi metal-contaminated paddy soil. Sci Total Environ 599:1297–1307
Yao Q, Liu JJ, Yu ZH et al (2017) Changes of bacterial community compositions after three years of biochar application in a black soil of northeast China. Appl Soil Ecol 113:11–21
Acknowledgements
This study was financially supported by the National Natural Science Foundation of China (Grant Nos. 41671236, 41877032), Key Program of Frontier Sciences, Chinese Academy of Sciences (QYZDJ-SSW-DQC035), and the Natural Science Foundation of Shandong Province, China (Grant No. ZR2016DB20).
Author information
Authors and Affiliations
Corresponding author
Electronic supplementary material
Below is the link to the electronic supplementary material.
Rights and permissions
About this article
Cite this article
Song, Y., Li, X., Xu, M. et al. Does Biochar Induce Similar Successions of Microbial Community Structures Among Different Soils?. Bull Environ Contam Toxicol 103, 642–650 (2019). https://doi.org/10.1007/s00128-019-02687-x
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00128-019-02687-x