Abstract
The rhizosphere area of plant root surface shows bountiful diversity of microorganisms. Microbial community within rhizosphere inhabiting the rice field ecosystem have been studied previously. It is not possible to isolate the whole microbial genome by traditional culture dependent method. Metagenomic covers entire genome of all microbial community irrespective of any habitat without in vitro culturing. Present review has been aimed to summarize the past practices and recent issues of metagenomic analysis of paddy field bacterial communities within rhizosphere from different geographic locations. So, this chapter deals with the recent tools, platform, pipelines and software of metagenomics used with other techniques (e.g., 16S rRNA gene sequencing with V3-V4 hypervariable region, Pyrosequencing, Metaproteomic, etc.) for the study of bacterial composition from different regions such as rhizosphere, phyllosphere, bulk soil, wetland region of soil, irrigated soil, flooded and non-flooded soil, high prevalence of salt soil and high incidence of rice blast fungus contaminated soil. The findings from this review helps to enhance the crop production, improve soil quality by more use of biofertilizers and also helps in disease management with biocontrol agent.
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Manapure, A., Singh, R.P., Rai, A.R. (2021). Bacterial Community Composition Dynamics in Rice Rhizosphere: A Metagenomic Approaches. In: Singh, R.P., Manchanda, G., Bhattacharjee, K., Panosyan, H. (eds) Microbes in Microbial Communities. Springer, Singapore. https://doi.org/10.1007/978-981-16-5617-0_6
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