Skip to main content

Molecular Performance of the MTG (Moderat Tahan Gano) Oil Palm Variety Based on SSR Markers

  • Conference paper
  • First Online:
Proceeding of the 1st International Conference on Tropical Agriculture

Abstract

The oil palm, an economically important crop tree in Indonesia, has been one of the world’s major sources of edible oil and a significant precursor of biodiesel fuel. The objectives of this study were to know the DNA profiles of oil palm trees from the commercial Moderat Tahan Gano (MTG) variety collections from PT Socfindo. A total of 15 individual palms of the MTG variety were used for analysis. In this experiment, the DNA profile diversity was assessed using three loci of the oil palm’s specific simple sequence repeat (SSR) markers. The results of the experiment indicated that out of three SSR marker loci evaluated, two loci were monomorphic in all genera of palms evaluated, while one was polymorphic. On the other hand, some allele profiles differed from the rest, indicating possibilities of either variants or mislabeled materials. These results demonstrated that the SSR marker can be used to evaluate genetic relatedness among progeny derived from different parents and to detect either genetic variants or mislabeling.

The original version of this chapter was revised. An erratum to this chapter can be found at https://doi.org/10.1007/978-3-319-60363-6_66

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 169.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 219.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 219.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

References

  1. Corley, R.H.V., Thinker, P.: The Oil Palm, 4th edn. Blackwell Science Ltd, London (2003)

    Book  Google Scholar 

  2. Asmono, D., et al.: Pemetaan genom pengendali produktivitas minyak pada kelapa sawit. [Genome mapping controller on palm oil productivity]. Integrated competitive research report (RUT) VII. Indonesian Institute of Science (2000) (in Bahasa Indonesia)

    Google Scholar 

  3. Presti, F.T., Wasko, A.P.: A review of microsatellite markers and their application on genetic diversity studies in parrots. Open J. Genet. 402, 69 (2014)

    Article  Google Scholar 

  4. Gupta, P.K., et al.: Microsatellites in plants: a new class of molecular markers. Curr. Sci. 70, 45–54 (1996)

    CAS  Google Scholar 

  5. Akkaya, M.S., et al.: Length polymorphisms of simple sequence repeat DNA in soybean. Genetics. 132, 1131–1139 (1992)

    CAS  PubMed  PubMed Central  Google Scholar 

  6. Gupta, P.K., Varshney, R.K.: The development and use of microsatellite markers for genetic analysis and plant breeding with the emphasis on bread wheat. Euphytica. 113, 163–185 (2000)

    Article  CAS  Google Scholar 

  7. Billotte, N., et al.: Development, characterization and across-taxa utility of oil palm (Elaeis guineensis Jacq.) microsatellite markers. Genome. 44, 413–425 (2001)

    Article  CAS  PubMed  Google Scholar 

  8. Taeprayoon, P., et al.: Genetic background of three commercial oil palm breeding populations in Thailand revealed by SSR markers. Aust. J. Crop. Sci. 9, 281–288 (2015)

    Google Scholar 

  9. Singh, R., et al.: Development of simple sequence repeat (SSR) markers for oil palm and their application in genetic mapping and fingerprinting of tissue culture clones. Asia-Pac. J. Mol. Biol. Biotech. 15, 121–131 (2007)

    Google Scholar 

  10. Hama-Ali, E.O., et al.: Illegitimacy and sibship assignments in oil palm (Elaeis guineensis Jacq.) half-sib families using single locus DNA microsatellite markers. Mol. Biol. Rep. 42, 917–925 (2015)

    Article  CAS  PubMed  Google Scholar 

  11. Billotte, N., et al.: QTL detection by multi-parent linkage mapping in oil palm (Elaeis guineensis Jacq.) Theor. Appl. Genet. 120, 1673–1687 (2010)

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  12. Ting, N.C., et al.: Identification of QTLs associated with callogenesis and embryogenesis in oil palm using genetic linkage maps improved with SSR markers. PLoS One. 8, 53076 (2013)

    Article  Google Scholar 

  13. McCouch, S.R., et al.: Development and mapping of 2,240 new SSR markers for rice (Oryza sativa L.) DNA. Research. 9, 257–279 (2002)

    CAS  Google Scholar 

  14. Oroczo-Castillo, C., et al.: Detection of genetic diversity and selective gene introgression in coffee using RAPD markers. Theor. Appl. Genet. 87, 934–940 (1994)

    Google Scholar 

  15. Toruan-Mathius, N., Hutabarat, T.: Pemanfaatan teknik penanda molekuler dalam usaha meningkatkan produktivitas tanaman perkebunan. [Utilization of molecular marker techniques in an effort to increase the productivity of plantation crops]. News Res. Center Biotech Plant. II. 1, 2–9 (1997)

    Google Scholar 

  16. Bilotte, N., et al.: Microsatellite-based high density linkage map in oil palm (Elaeis guineensis Jacq.) Theor. Appl. Genet. 110, 754–765 (2005)

    Article  Google Scholar 

  17. Asif, M., et al.: High resolution metaphor agarose gel electrophoresis for genotyping with microsatellite markers. Pak. J. Agric. Sci. 45, 75–79 (2008)

    Google Scholar 

Download references

Acknowledgments

The authors gratefully acknowledge the full support received from PT Socfindo Indonesia for the present research and the University of Sumatera, Utara Ministry of Research and Technology and Higher Education, Republic of Indonesia. The support comes under the research grant BP-PTN USU of year 2016 Contract Number 27/UN5.2.3.1/PPM/SP/2016.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Lollie Agustina P. Putri .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2017 Springer International Publishing AG

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Putri, L.A.P., Setiado, H., Syahputra, I., Arifiyanto, D., Hardianti, R. (2017). Molecular Performance of the MTG (Moderat Tahan Gano) Oil Palm Variety Based on SSR Markers. In: Isnansetyo, A., Nuringtyas, T. (eds) Proceeding of the 1st International Conference on Tropical Agriculture. Springer, Cham. https://doi.org/10.1007/978-3-319-60363-6_14

Download citation

Publish with us

Policies and ethics