Skip to main content

In-Field Diagnostics Using Loop-Mediated Isothermal Amplification

  • Protocol
  • First Online:
Phytoplasma

Part of the book series: Methods in Molecular Biology ((MIMB,volume 938))

Abstract

Loop-mediated isothermal amplification (LAMP) is a method for amplification and detection of target organisms which, unlike polymerase chain reaction, does not require thermal cycling. LAMP assays can be developed in the laboratory for subsequent deployment in the field, where the simplicity of isothermal amplification makes LAMP a suitable method for rapid detection of phytoplasmas with levels of sensitivity and specificity approaching those of more complex and time-consuming laboratory methods.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 89.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 119.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

References

  1. Notomi T et al (2000) Loop-mediated isothermal amplification of DNA. Nucl Acids Res 28:e63

    Article  PubMed  CAS  Google Scholar 

  2. Nagamine K et al (2001) Loop-mediated isothermal amplification reaction using a nondenatured template. Clin Chem 47:1742–1743

    PubMed  CAS  Google Scholar 

  3. Nagamine K, Hase T, Notomi T (2002) Accelerated reaction by loop-mediated isothermal amplification using loop primers. Mol Cell Probes 16:223–229

    Article  PubMed  CAS  Google Scholar 

  4. Tomlinson J, Boonham N (2008) Potential of LAMP for detection of plant pathogens. CAB Reviews: Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resources 3, 066, p 1–7

    Google Scholar 

  5. Tomlinson JA, Boonham N, Dickinson M (2010) Development and evaluation of a one-hour DNA extraction and loop-mediated isothermal amplification assay for rapid detection of phytoplasmas. Plant Pathol 59:465–471

    Article  CAS  Google Scholar 

  6. Hodgetts J et al (2011) Development of rapid in-field loop-mediated isothermal amplification (LAMP) assays for phytoplasmas. Bull Insectol 64:S41–S42

    Google Scholar 

  7. Bekele B et al (2011) Use of a real-time LAMP isothermal assay for detecting 16SrII and XII phytoplasmas in fruit and weeds of the Ethiopian Rift Valley. Plant Pathol 60:345–355

    Article  CAS  Google Scholar 

  8. Obura E et al (2011) Detection of phytoplasma by loop-mediated isothermal amplification of DNA (LAMP). J Microbiol Methods 84:312–316

    Article  PubMed  CAS  Google Scholar 

  9. Yankey EN et al (2011) Improving molecular diagnostics for the detection of lethal disease phytoplasma of coconut in Ghana. Bull Insectol 64:S47–S48

    Google Scholar 

  10. Kibbe WA (2007) OligoCalc: an online oligonucleotide properties calculator. Nucl Acids Res 35:W43–W46

    Article  PubMed  Google Scholar 

  11. Tomlinson JA, Dickinson MJ, Boonham N (2010) Rapid detection of Phytophthora ramorum and P. kernoviae by two-minute DNA extraction followed by isothermal amplification and amplicon detection by generic lateral flow device. Phytopathology 100:143–149

    Article  PubMed  CAS  Google Scholar 

  12. Chomczynski P, Rymaszewski M (2006) Alkaline polyethylene glycol-based method for direct PCR from bacteria, eukaryotic tissue samples, and whole blood. Biotechniques 40:454–458

    Article  PubMed  CAS  Google Scholar 

  13. Kiatpathomchai W et al (2008) Shrimp Taura syndrome virus detection by reverse transcription loop-mediated isothermal amplification combined with a lateral flow dipstick. J Virol Methods 153:214–217

    Article  PubMed  CAS  Google Scholar 

  14. Mori Y et al (2004) Real-time turbidimetry of LAMP reaction for quantifying template DNA. J Biochem Biophys Methods 59:145–157

    Article  PubMed  CAS  Google Scholar 

  15. Mori Y et al (2001) Detection of loop-mediated isothermal amplification reaction by turbidity derived from magnesium pyrophosphate formation. Biochem Biophys Res Commun 289:150–154

    Article  PubMed  CAS  Google Scholar 

  16. Iwamoto T, Sonobe T, Hayashi K (2003) Loop-mediated isothermal amplification for direct detection of Mycobacterium tuberculosis complex, M. avium, and M. intracellulare in sputum samples. J Clin Microbiol 41:2616–2622

    Article  PubMed  CAS  Google Scholar 

  17. Goto M et al (2009) Colorimetric detection of loop-mediated isothermal amplification reaction by using hydroxy naphthol blue. Biotechniques 46:167–172

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Jenny Tomlinson .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2013 Springer Science+Business Media, LLC

About this protocol

Cite this protocol

Tomlinson, J. (2013). In-Field Diagnostics Using Loop-Mediated Isothermal Amplification. In: Dickinson, M., Hodgetts, J. (eds) Phytoplasma. Methods in Molecular Biology, vol 938. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-62703-089-2_25

Download citation

  • DOI: https://doi.org/10.1007/978-1-62703-089-2_25

  • Published:

  • Publisher Name: Humana Press, Totowa, NJ

  • Print ISBN: 978-1-62703-088-5

  • Online ISBN: 978-1-62703-089-2

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics