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Serine Protease Zymography: Low-Cost, Rapid, and Highly Sensitive RAMA Casein Zymography

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Zymography

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1626))

Abstract

To detect serine protease activity by zymography, casein and CBB stain have been used as a substrate and a detection procedure, respectively. Casein zymography has been using substrate concentration at 1 mg/mL and employing conventional CBB stain. Although ordinary casein zymography provides reproducible results, it has several disadvantages including time-consuming and relative low sensitivity. Improved casein zymography, RAMA casein zymography, is rapid and highly sensitive. RAMA casein zymography completes the detection process within 1 h after incubation and increases the sensitivity at least by tenfold. In addition to serine protease, the method also detects metalloprotease 7 (MMP7, Matrilysin) with high sensitivity.

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References

  1. Naggie S, Patel K, McHutchison J (2010) Hepatitis C virus directly acting antivirals: current developments with NS3/4A HCV serine protease inhibitors. J Antimicrob Chemother 65(10):2063–2069. doi:10.1093/jac/dkq284

    Article  CAS  PubMed  Google Scholar 

  2. Ruiz-Perez F, Nataro JP (2014) Bacterial serine proteases secreted by the autotransporter pathway: classification, specificity, and role in virulence. Cell Mol Life Sci 71(5):745–770. doi:10.1007/s00018-013-1355-8

    Article  CAS  PubMed  Google Scholar 

  3. Raju RM, Goldberg AL, Rubin EJ (2012) Bacterial proteolytic complexes as therapeutic targets. Nat Rev Drug Discov 11(10):777–789. doi:10.1038/nrd3846

    Article  CAS  PubMed  Google Scholar 

  4. Yike I (2011) Fungal proteases and their pathophysiological effects. Mycopathologia 171(5):299–323. doi:10.1007/s11046-010-9386-2

    Article  CAS  PubMed  Google Scholar 

  5. Antao CM, Malcata FX (2005) Plant serine proteases: biochemical, physiological and molecular features. Plant Physiol Biochem 43(7):637–650. doi:10.1016/j.plaphy.2005.05.001

    Article  CAS  PubMed  Google Scholar 

  6. Lu Q, Clemetson JM, Clemetson KJ (2005) Snake venoms and haemostasis. J Thromb Haemost 3(8):1791–1799. doi:10.1111/j.1538-7836.2005.01358.x

    Article  CAS  PubMed  Google Scholar 

  7. Kini RM (2005) Serine proteases affecting blood coagulation and fibrinolysis from snake venoms. Pathophysiol Haemost Thromb 34(4–5):200–204. doi:10.1159/000092424

    CAS  PubMed  Google Scholar 

  8. Whitcomb DC, Lowe ME (2007) Human pancreatic digestive enzymes. Dig Dis Sci 52(1):1–17. doi:10.1007/s10620-006-9589-z

    Article  CAS  PubMed  Google Scholar 

  9. Zasloff M (2002) Trypsin, for the defense. Nat Immunol 3(6):508–510. doi:10.1038/ni0602-508

    Article  CAS  PubMed  Google Scholar 

  10. Kessenbrock K, Dau T, Jenne DE (2011) Tailor-made inflammation: how neutrophil serine proteases modulate the inflammatory response. J Mol Med (Berl) 89(1):23–28. doi:10.1007/s00109-010-0677-3

    Article  CAS  Google Scholar 

  11. Smith PK, Harper JI (2006) Serine proteases, their inhibitors and allergy. Allergy 61(12):1441–1447. doi:10.1111/j.1398-9995.2006.01233.x

    Article  CAS  PubMed  Google Scholar 

  12. Wu Q, Kuo HC, Deng GG (2005) Serine proteases and cardiac function. Biochim Biophys Acta 1751(1):82–94. doi:10.1016/j.bbapap.2004.09.005

    Article  CAS  PubMed  Google Scholar 

  13. Almonte AG, Sweatt JD (2011) Serine proteases, serine protease inhibitors, and protease-activated receptors: roles in synaptic function and behavior. Brain Res 1407:107–122. doi:10.1016/j.brainres.2011.06.042

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  14. Vandooren J, Geurts N, Martens E, Van den Steen PE, Opdenakker G (2013) Zymography methods for visualizing hydrolytic enzymes. Nat Methods 10(3):211–220. doi:10.1038/nmeth.2371

    Article  CAS  PubMed  Google Scholar 

  15. Wilkesman J, Kurz L (2012) Advances in zymography techniques and patents regarding protease analysis. Recent Pat Biotechnol 6(2):106–114

    Article  CAS  PubMed  Google Scholar 

  16. Wilkesman J, Kurz L (2009) Protease analysis by zymography: a review on techniques and patents. Recent Pat Biotechnol 3(3):175–184

    Article  CAS  PubMed  Google Scholar 

  17. Lantz MS, Ciborowski P (1994) Zymographic techniques for detection and characterization of microbial proteases. Methods Enzymol 235:563–594

    Article  CAS  PubMed  Google Scholar 

  18. SJFaZ W (1995) The catabolism of extracellular matrix. In: MAHaJR H (ed) Extracellular matrix: a practical approach. Oxford University Press, New York, pp 261–287

    Google Scholar 

  19. Yasumitsu H, Ozeki Y, Kawsar SM, Toda T, Kanaly R (2010) CGP stain: an inexpensive, odorless, rapid, sensitive, and in principle in vitro methylation-free Coomassie Brilliant Blue stain. Anal Biochem 406(1):86–88. doi:10.1016/j.ab.2010.06.035

    Article  CAS  PubMed  Google Scholar 

  20. Yasumitsu H, Ozeki Y, Kawsar SM, Fujii Y, Sakagami M, Matuo Y, Toda T, Katsuno H (2010) RAMA stain: a fast, sensitive and less protein-modifying CBB R250 stain. Electrophoresis 31(12):1913–1917. doi:10.1002/elps.200900524

    Article  CAS  PubMed  Google Scholar 

  21. Yasumitsu H, Ozeki Y, Kanaly RA (2016) RAMA casein zymography: time-saving and highly sensitive casein zymography for MMP7 and trypsin. Electrophoresis 37(22):2959–2962. doi:10.1002/elps.201600346

  22. Katsuno H, Shirakawa R, Miyazaki K, Ozeki Y, Yasumitsu H (2010) Production of active MMP7 in E. coli and its application for metalloproteinase inhibitors screening. Protein Pept Lett 17(5):568–572

    Article  CAS  PubMed  Google Scholar 

  23. Miyazaki K, Hattori Y, Umenishi F, Yasumitsu H, Umeda M (1990) Purification and characterization of extracellular matrix-degrading metalloproteinase, matrin (pump-1), secreted from human rectal carcinoma cell line. Cancer Res 50(24):7758–7764

    CAS  PubMed  Google Scholar 

  24. Yasumitsu H, Miyazaki K, Umenishi F, Koshikawa N, Umeda M (1992) Comparison of extracellular matrix-degrading activities between 64-kDa and 90-kDa gelatinases purified in inhibitor-free forms from human schwannoma cells. J Biochem 111(1):74–80

    Article  CAS  PubMed  Google Scholar 

  25. Fernandez-Resa P, Mira E, Quesada AR (1995) Enhanced detection of casein zymography of matrix metalloproteinases. Anal Biochem 224(1):434–435

    Article  CAS  PubMed  Google Scholar 

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Acknowledgment

The author is grateful to Mariko Kawasaki-Yasumitsu for her excellent support and also to members of Kamimachi Hospital. This work was supported by a 2010 Incentive Grant from Yokohama Academic Foundation.

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Correspondence to Hidetaro Yasumitsu .

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Yasumitsu, H. (2017). Serine Protease Zymography: Low-Cost, Rapid, and Highly Sensitive RAMA Casein Zymography. In: Wilkesman, J., Kurz, L. (eds) Zymography. Methods in Molecular Biology, vol 1626. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-7111-4_2

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  • DOI: https://doi.org/10.1007/978-1-4939-7111-4_2

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  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-7109-1

  • Online ISBN: 978-1-4939-7111-4

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