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Methods for Determining Glycosyltransferase Kinetics

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Protein-Carbohydrate Interactions

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1588))

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Abstract

Glycosyltransferases are a class of biosynthetic enzymes that transfer individual activated monosaccharide units to specific acceptors. Colorimetric assays using the detection of released products such as para-nitrophenol and coupled assays for inorganic phosphate detection allow for convenient and quantifiable kinetic characterization. These techniques may be applied to determine the enzymatic activity of glycosyltransferases by indirectly measuring the transfer of nucleotide-activated donor carbohydrate units to various cognate acceptor molecules. In addition to an overview of these methods, the protocol for quantifying the glycosyltransferase activity used for the characterization of penicillin-binding proteins (PBPs) involving the transfer of lipid II to form elongated murein chains during bacterial cell wall synthesis is described herein.

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References

  1. Lombard V, Bernard T, Rancurel C et al (2010) A hierarchical classfication of polysaccharide lyases for glycogenomics. Biochem J 432:437–444

    Article  CAS  PubMed  Google Scholar 

  2. Campbell JA, Davies GJ, Bulone V, Henrissat B (1997) A classification of nucleotide-diphospho-sugar glycosyltransferases based on amino acid sequence similarities. Biochem J 326:929–942

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  3. Coutinho PM, Deleury E, Davies GJ, Henrissat B (2003) An evolving hierarchical family classification for glycosyltransferases. J Mol Biol 328:307–317

    Article  CAS  PubMed  Google Scholar 

  4. Liu Z, Lu Y, Zhang J et al (2003) Glycosylation reactions Using recombinant Escherichia coli. Appl Environ Microbiol 69:2110–2115

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  5. Liu XW, Xia C, Li L et al (2009) = O55:H7. Bioorg Med Chem 17:4910–4915

    Article  CAS  PubMed  Google Scholar 

  6. Zhang J, Kowal P, Fang J et al (2002) Efficient chemoenzymatic synthesis of globotriose and its derivatives with a recombinant alpha(1-4)-galactosyltransferase. Carbohydr Res 337:969–976

    Article  CAS  PubMed  Google Scholar 

  7. Shen R, Wang S, Ma X et al (2010) An easy colorimetric assay for glycosyltransferases. Biochem 75:944–950

    CAS  Google Scholar 

  8. Bertram M, Manschot-Lawrence C, Floter E, Bornscheuer UT (2007) A microtiter plate-based assay method to determine fat quality. Eur J Lipid Sci Technol 109:180–185

    Article  CAS  Google Scholar 

  9. Solhtalab M, Karbalaei-Heidari HR, Absalan G (2015) Tuning of hydrophilic ionic liquids concentration: a way to prevent enzyme instability. J Mol Catal B: Enzym 122:125–130

    Article  CAS  Google Scholar 

  10. Wu ZL, Ethen CM, Prather B et al (2011) Universal phosphatase-coupled glycosyltransferase assay. Glycobiology 21:727–733

    Article  CAS  PubMed  Google Scholar 

  11. Baykov AA, Evtushenko OA, Avaeva SM (1988) A malachite green procedure for orthophosphate determination and its use in alkaline phosphatase-based enzyme immunoassay. Anal Biochem 171:266–270

    Article  CAS  PubMed  Google Scholar 

  12. Tedaldi L, Evitt A, Göös N et al (2014) A practical glycosyltransferase assay for the identification of new inhibitor chemotypes. MedChemComm 5:1193–1201

    Article  CAS  Google Scholar 

  13. Schwartz B, Markwalder JA, Wang Y (2001) Lipid II: total synthesis of the bacterial cell wall precursor and utilization as a substrate for glycosyltransfer and transpeptidation by penicillin binding protein (PBP) 1b of Escherichia coli. J Am Chem Soc 123:11638–11643

    Article  CAS  PubMed  Google Scholar 

  14. Terrak M, Nguyen-distèche M (2006) Kinetic characterization of the monofunctional glycosyltransferase from Staphylococcus aureus. J Bateriol 188:2528–2532

    Article  CAS  Google Scholar 

  15. Schwartz B, Markwalder JA, Seitz SP et al (2002) A kinetic characterization of the glycosyltransferase activity of Escherichia coli PBP1b and development of a continuous fluorescence assay. Biochemistry 41:12552–12561

    Article  CAS  PubMed  Google Scholar 

  16. Blanchaert B, Adams E, Van Schepdael A (2014) An overview of analytical methods for monitoring bacterial transglycosylation. Anal Methods 6:7590–7596

    Article  CAS  Google Scholar 

  17. Borisova SA, Zhao L, Melancon CE et al (2004) Characterization of the glycosyltransferase activity of DesVII: analysis of and implications for the biosynthesis of macrolide antibiotics. J Am Chem Soc 126:6534–6535

    Article  CAS  PubMed  Google Scholar 

  18. Cartwright AM, Lim EK, Kleanthous C, Bowles DJ (2008) A kinetic analysis of regiospecific glucosylation by two glycosyltransferases of Arabidopsis thaliana: domain swapping to introduce new activities. J Biol Chem 283:15724–15731

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  19. Barrett D, Barrett D, Leimkuhler C et al (2005) Kinetic characterization of the glycosyltransferase module of Staphylococcus aureus PBP2. Microbiology 187:2215–2217

    CAS  Google Scholar 

  20. Weis M, Lim EK, Bruce NC, Bowles DJ (2008) Engineering and kinetic characterisation of two glucosyltransferases from Arabidopsis thaliana. Biochimie 90:830–834

    Article  CAS  PubMed  Google Scholar 

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Acknowledgment

This work was supported by NSERC grant RGPIN-2014-05018 and the Faculty of Science, Wilfrid Laurier University.

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Correspondence to Michael D. L. Suits .

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Ngo, M., Suits, M.D.L. (2017). Methods for Determining Glycosyltransferase Kinetics. In: Abbott, D., Lammerts van Bueren, A. (eds) Protein-Carbohydrate Interactions. Methods in Molecular Biology, vol 1588. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-6899-2_6

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  • DOI: https://doi.org/10.1007/978-1-4939-6899-2_6

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  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-6898-5

  • Online ISBN: 978-1-4939-6899-2

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