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Strategies for the Purification of Membrane Proteins

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Protein Chromatography

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1485))

Abstract

Although membrane proteins account for approximately 30 % of the coding regions of all sequenced genomes and play crucial roles in many fundamental cell processes, there are relatively few membranes with known 3D structure. This is likely due to technical challenges associated with membrane protein extraction, solubilization, and purification. Membrane proteins are classified based on the level of interaction with membrane lipid bilayers, with peripheral membrane proteins associating noncovalently with the membrane, and integral membrane proteins associating more strongly by means of hydrophobic interactions. Generally speaking, peripheral membrane proteins can be purified by milder techniques than integral membrane proteins, whose extraction require phospholipid bilayer disruption by detergents. Here, important criteria for strategies of membrane protein purification are addressed, with a focus on the initial stages of membrane protein solublilization, where problems are most frequently are encountered. Protocols are outlined for the successful extraction of peripheral membrane proteins, solubilization of integral membrane proteins, and detergent removal which is important not only for retaining native protein stability and biological functions, but also for the efficiency of downstream purification techniques.

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References

  1. Wallin E, von Heijne G (1998) Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms. Protein Sci 7:1029–1038

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  2. Souda P, Ryan CM, Cramer WA, Whitelegge J (2011) Profiling of integral membrane proteins and their post translational modifications using high-resolution mass spectrometry. Methods 55:330–336

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  3. Laganowsky A, Reading E, Hopper JT, Robinson CV (2013) Mass spectrometry of intact membrane protein complexes. Nat Protoc 8:639–651

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  4. Zorman S, Botte M, Jiang Q, Collinson I, Schaffitzel C (2015) Advances and challenges of membrane-protein complex production. Curr Opin Struct Biol 32:123–130

    Article  CAS  PubMed  Google Scholar 

  5. Chiu ML (2012) Introduction to membrane proteins. Curr Protoc Protein Sci Chapter 29:Unit 29.1

    Google Scholar 

  6. Mohanty AK, Wiener MC (2004) Membrane protein expression and production: effects of polyhistidine tag length and position. Protein Expr Purif 33:311–325

    Article  CAS  PubMed  Google Scholar 

  7. Gordon E, Horsefield R, Swarts HG, de Pont JJ, Neutze R, Snijder A (2008) Effective high-throughput overproduction of membrane proteins in Escherichia coli. Protein Expr Purif 62:1–8

    Article  CAS  PubMed  Google Scholar 

  8. Stansfeld PJ, Goose JE, Caffrey M, Carpenter EP, Parker JL, Newstead S, Sansom MS (2015) MemProtMD: automated insertion of membrane protein structures into explicit lipid membranes. Structure 23:1350–1361

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  9. Ahmed H (2005) Principles and reactions of protein extraction purification and characterization. CRC Press, Boca Raton, FL

    Google Scholar 

  10. Ohlendieck K (1996) Extraction of membrane proteins. In: Doonan S (ed) Protein purification protocols. Humana Press Inc., Totowa, NJ

    Google Scholar 

  11. Zheng X, Dong S, Zheng J, Li D, Li F, Luo Z (2014) Expression, stabilization and purification of membrane proteins via diverse protein synthesis systems and detergents involving cell-free associated with self-assembly peptide surfactants. Biotechnol Adv 32:564–574

    Article  CAS  PubMed  Google Scholar 

  12. Routledge SJ, Mikaliunaite L, Patel A, Clare M, Cartwright SP, Bawa Z, Wilks MD, Low F, Hardy D, Rothnie AJ, Bill RM (2016) The synthesis of recombinant membrane proteins in yeast for structural studies. Methods 95:26–37

    Article  CAS  PubMed  Google Scholar 

  13. Von Jagow G, Link T, Schager H (1994) Purification strategies for membrane proteins. In: Von Jagow G, Schager H (eds) A practical guide to membrane protein purification. Academic Press, San Diego, CA

    Google Scholar 

  14. Orsburn BC, Stockwin LH, Newton DL (2011) Challenges in plasma membrane phosphoproteomics. Expert Rev Proteomics 8:483–494

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  15. Rosenberg IM (2005) Protein analysis and purification: benchtop techniques, 2nd edn. Birkhauser, Basel, ISBN 978-0-8176-4412-3

    Google Scholar 

  16. Schimerlik MI (2001) Overview of membrane protein solubilization. Curr Protoc Neurosci Chapter 5:Unit 5.9.

    Google Scholar 

  17. Chae PS, Rasmussen SG, Rana RR, Gotfryd K, Chandra R, Goren MA, Kruse AC, Nurva S, Loland CJ, Pierre Y, Drew D, Popot JL, Picot D, Fox BG, Guan L, Gether U, Byrne B, Kobilka B, Gellman SH (2010) Maltose-neopentyl glycol (MNG) amphiphiles for solubilization, stabilization and crystallization of membrane proteins. Nat Methods 7:1003–1008

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  18. Bazzacco P, Sharma KS, Durand G, Giusti F, Ebel C, Popot JL, Pucci B (2009) Trapping and stabilization of integral membrane proteins by hydrophobically grafted glucose-based telomers. Biomacromolecules 10:3317–3326

    Article  CAS  PubMed  Google Scholar 

  19. Lee SC, Bennett BC, Hong WX, Fu Y, Baker KA, Marcoux J, Robinson CV, Ward AB, Halpert JR, Stevens RC, Stout CD, Yeager MJ, Zhang Q (2013) Steroid-based facial amphiphiles for stabilization and crystallization of membrane proteins. Proc Natl Acad Sci U S A 110:E1203–E1211

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  20. Ohlendieck K (1996) Removal of detergent from protein fractions. Methods Mol Biol 59:305–312

    CAS  PubMed  Google Scholar 

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Correspondence to Sinéad M. Smith .

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Smith, S.M. (2017). Strategies for the Purification of Membrane Proteins. In: Walls, D., Loughran, S. (eds) Protein Chromatography. Methods in Molecular Biology, vol 1485. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-6412-3_21

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  • DOI: https://doi.org/10.1007/978-1-4939-6412-3_21

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  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-6410-9

  • Online ISBN: 978-1-4939-6412-3

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