Abstract
Clonetegration is a method for site-specific insertion of DNA into prokaryotic chromosomes, based on bacteriophage integrases. The method combines DNA cloning/assembly and chromosomal integration into a single step, providing a simple and rapid strategy for inserting DNA sequences into bacterial chromosomes.
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References
Bonnet J, Subsoontorn P, Endy D (2012) Rewritable digital data storage in live cells via engineered control of recombination directionality. Proc Natl Acad Sci U S A 109(23):8884–8889. doi:10.1073/pnas.1202344109
Nielsen AA, Segall-Shapiro TH, Voigt CA (2013) Advances in genetic circuit design: novel biochemistries, deep part mining, and precision gene expression. Curr Opin Chem Biol 17(6):878–892. doi:10.1016/j.cbpa.2013.10.003
Stanton BC, Nielsen AA, Tamsir A et al (2014) Genomic mining of prokaryotic repressors for orthogonal logic gates. Nat Chem Biol 10(2):99–105. doi:10.1038/nchembio.1411
St-Pierre F, Cui L, Priest DG et al (2013) One-step cloning and chromosomal integration of DNA. ACS Synth Biol 2(9):537–541. doi:10.1021/sb400021j
Cui L, St-Pierre F, Shearwin K (2013) Repurposing site-specific recombinases for synthetic biology. Future Microbiol 8(11):1361–1364. doi:10.2217/fmb.13.119
Haldimann A, Wanner BL (2001) Conditional-replication, integration, excision, and retrieval plasmid-host systems for gene structure-function studies of bacteria. J Bacteriol 183(21):6384–6393
Filutowicz M, McEachern MJ, Helinski DR (1986) Positive and negative roles of an initiator protein at an origin of replication. Proc Natl Acad Sci U S A 83(24):9645–9649
Shetty RP, Endy D, Knight TF Jr (2008) Engineering BioBrick vectors from BioBrick parts. J Biol Eng 2:5. doi:10.1186/1754-1611-2-5
Bernard P, Couturier M (1992) Cell killing by the F plasmid CcdB protein involves poisoning of DNA-topoisomerase II complexes. J Mol Biol 226(3):735–745
Gibson DG, Young L, Chuang RY et al (2009) Enzymatic assembly of DNA molecules up to several hundred kilobases. Nat Methods 6(5):343–345. doi:10.1038/nmeth.1318
Chung CT, Niemela SL, Miller RH (1989) One-step preparation of competent Escherichia coli: transformation and storage of bacterial cells in the same solution. Proc Natl Acad Sci U S A 86(7):2172–2175
Priest DG, Cui L, Kumar S et al (2014) Quantitation of the DNA tethering effect in long-range DNA looping in vivo and in vitro using the Lac and lambda repressors. Proc Natl Acad Sci U S A 111(1):349–354. doi:10.1073/pnas.1317817111
Reed MR, Shearwin KE, Pell LM et al (1997) The dual role of Apl in prophage induction of coliphage 186. Mol Microbiol 23(4):669–681
Irwin CR, Farmer A, Willer DO et al (2012) In-fusion(R) cloning with vaccinia virus DNA polymerase. Methods Mol Biol 890:23–35. doi:10.1007/978-1-61779-876-4_2
Genee HJ, Bonde MT, Bagger FO et al (2015) Software-supported USER cloning strategies for site-directed mutagenesis and DNA assembly. ACS Synth Biol 4(3):342–349. doi:10.1021/sb500194z
de Kok S, Stanton LH, Slaby T et al (2014) Rapid and reliable DNA assembly via ligase cycling reaction. ACS Synth Biol 3(2):97–106. doi:10.1021/sb4001992
Dagert M, Ehrlich SD (1979) Prolonged incubation in calcium chloride improves the competence of Escherichia coli cells. Gene 6(1):23–28
Gonzales MF, Brooks T, Pukatzki SU et al (2013) Rapid protocol for preparation of electrocompetent Escherichia coli and Vibrio cholerae. J Vis Exp 80:PMID:24146001. doi:10.3791/50684
Cherepanov PP, Wackernagel W (1995) Gene disruption in Escherichia coli: TcR and KmR cassettes with the option of Flp-catalyzed excision of the antibiotic-resistance determinant. Gene 158(1):9–14
Acknowledgements
This work was supported by the Pasteur-Roux Fellowship (L.C.) and Australian Research Council grants DP110100824 and DP110101470 and HFSP grant RGP051 (K.E.S.).
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Cui, L., Shearwin, K.E. (2017). Clonetegration Using OSIP Plasmids: One-Step DNA Assembly and Site-Specific Genomic Integration in Bacteria. In: Hughes, R. (eds) Synthetic DNA. Methods in Molecular Biology, vol 1472. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-6343-0_11
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DOI: https://doi.org/10.1007/978-1-4939-6343-0_11
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