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Clonetegration Using OSIP Plasmids: One-Step DNA Assembly and Site-Specific Genomic Integration in Bacteria

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Synthetic DNA

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1472))

Abstract

Clonetegration is a method for site-specific insertion of DNA into prokaryotic chromosomes, based on bacteriophage integrases. The method combines DNA cloning/assembly and chromosomal integration into a single step, providing a simple and rapid strategy for inserting DNA sequences into bacterial chromosomes.

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References

  1. Bonnet J, Subsoontorn P, Endy D (2012) Rewritable digital data storage in live cells via engineered control of recombination directionality. Proc Natl Acad Sci U S A 109(23):8884–8889. doi:10.1073/pnas.1202344109

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  2. Nielsen AA, Segall-Shapiro TH, Voigt CA (2013) Advances in genetic circuit design: novel biochemistries, deep part mining, and precision gene expression. Curr Opin Chem Biol 17(6):878–892. doi:10.1016/j.cbpa.2013.10.003

    Article  CAS  PubMed  Google Scholar 

  3. Stanton BC, Nielsen AA, Tamsir A et al (2014) Genomic mining of prokaryotic repressors for orthogonal logic gates. Nat Chem Biol 10(2):99–105. doi:10.1038/nchembio.1411

    Article  CAS  PubMed  Google Scholar 

  4. St-Pierre F, Cui L, Priest DG et al (2013) One-step cloning and chromosomal integration of DNA. ACS Synth Biol 2(9):537–541. doi:10.1021/sb400021j

    Article  CAS  PubMed  Google Scholar 

  5. Cui L, St-Pierre F, Shearwin K (2013) Repurposing site-specific recombinases for synthetic biology. Future Microbiol 8(11):1361–1364. doi:10.2217/fmb.13.119

    Article  CAS  PubMed  Google Scholar 

  6. Haldimann A, Wanner BL (2001) Conditional-replication, integration, excision, and retrieval plasmid-host systems for gene structure-function studies of bacteria. J Bacteriol 183(21):6384–6393

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  7. Filutowicz M, McEachern MJ, Helinski DR (1986) Positive and negative roles of an initiator protein at an origin of replication. Proc Natl Acad Sci U S A 83(24):9645–9649

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  8. Shetty RP, Endy D, Knight TF Jr (2008) Engineering BioBrick vectors from BioBrick parts. J Biol Eng 2:5. doi:10.1186/1754-1611-2-5

    Article  PubMed  PubMed Central  Google Scholar 

  9. Bernard P, Couturier M (1992) Cell killing by the F plasmid CcdB protein involves poisoning of DNA-topoisomerase II complexes. J Mol Biol 226(3):735–745

    Article  CAS  PubMed  Google Scholar 

  10. Gibson DG, Young L, Chuang RY et al (2009) Enzymatic assembly of DNA molecules up to several hundred kilobases. Nat Methods 6(5):343–345. doi:10.1038/nmeth.1318

    Article  CAS  PubMed  Google Scholar 

  11. Chung CT, Niemela SL, Miller RH (1989) One-step preparation of competent Escherichia coli: transformation and storage of bacterial cells in the same solution. Proc Natl Acad Sci U S A 86(7):2172–2175

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  12. Priest DG, Cui L, Kumar S et al (2014) Quantitation of the DNA tethering effect in long-range DNA looping in vivo and in vitro using the Lac and lambda repressors. Proc Natl Acad Sci U S A 111(1):349–354. doi:10.1073/pnas.1317817111

    Article  CAS  PubMed  Google Scholar 

  13. Reed MR, Shearwin KE, Pell LM et al (1997) The dual role of Apl in prophage induction of coliphage 186. Mol Microbiol 23(4):669–681

    Article  CAS  PubMed  Google Scholar 

  14. Irwin CR, Farmer A, Willer DO et al (2012) In-fusion(R) cloning with vaccinia virus DNA polymerase. Methods Mol Biol 890:23–35. doi:10.1007/978-1-61779-876-4_2

    Article  CAS  PubMed  Google Scholar 

  15. Genee HJ, Bonde MT, Bagger FO et al (2015) Software-supported USER cloning strategies for site-directed mutagenesis and DNA assembly. ACS Synth Biol 4(3):342–349. doi:10.1021/sb500194z

    Article  CAS  PubMed  Google Scholar 

  16. de Kok S, Stanton LH, Slaby T et al (2014) Rapid and reliable DNA assembly via ligase cycling reaction. ACS Synth Biol 3(2):97–106. doi:10.1021/sb4001992

    Article  PubMed  Google Scholar 

  17. Dagert M, Ehrlich SD (1979) Prolonged incubation in calcium chloride improves the competence of Escherichia coli cells. Gene 6(1):23–28

    Article  CAS  PubMed  Google Scholar 

  18. Gonzales MF, Brooks T, Pukatzki SU et al (2013) Rapid protocol for preparation of electrocompetent Escherichia coli and Vibrio cholerae. J Vis Exp 80:PMID:24146001. doi:10.3791/50684

    Google Scholar 

  19. Cherepanov PP, Wackernagel W (1995) Gene disruption in Escherichia coli: TcR and KmR cassettes with the option of Flp-catalyzed excision of the antibiotic-resistance determinant. Gene 158(1):9–14

    Article  CAS  PubMed  Google Scholar 

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Acknowledgements

This work was supported by the Pasteur-Roux Fellowship (L.C.) and Australian Research Council grants DP110100824 and DP110101470 and HFSP grant RGP051 (K.E.S.).

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Correspondence to Keith E. Shearwin .

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Cui, L., Shearwin, K.E. (2017). Clonetegration Using OSIP Plasmids: One-Step DNA Assembly and Site-Specific Genomic Integration in Bacteria. In: Hughes, R. (eds) Synthetic DNA. Methods in Molecular Biology, vol 1472. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-6343-0_11

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  • DOI: https://doi.org/10.1007/978-1-4939-6343-0_11

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  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-6341-6

  • Online ISBN: 978-1-4939-6343-0

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