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Molecular RHD-RHCE Analysis by Multiplex PCR of Short Fluorescent Fragments

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Molecular Typing of Blood Cell Antigens

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1310))

Abstract

Several hundred variant alleles have been reported within the homologous RHD and RHCE genes that encode the antigens involved in the human Rh blood group system, which is of the main interest in the field of both transfusion and obstetrical medicine. Although these variants can be mostly characterized at the molecular level by sequence-specific primer polymerase chain reaction (SSP-PCR) and/or direct sequencing, some allelic combinations remain unresolved by conventional methods. Typically exon deletion or hybrid genes may be difficult to assess in a heterozygous context. Here we describe a qualitative and quantitative method to resolve copy number variations in the RH gene exons by quantitative multiplex polymerase chain reaction (PCR) of short fluorescent fragments (QMPSF).

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References

  1. Daniels G (2013) Rh and RHAG blood group systems. In: Daniels G (ed) Human blood groups, 3rd edn. Wiley-Blackwell, Chichester, pp 182–258

    Chapter  Google Scholar 

  2. Klein HG, Anstee DJ (2005) The Rh blood group system (and LW). In: Klein HG, Anstee DJ (eds) Mollison’s blood transfusion in clinical medicine, 11th edn. Blackwell Publishing, Oxford, pp 163–208

    Chapter  Google Scholar 

  3. Avent ND, Ridgwell K, Tanner MJ et al (1990) cDNA cloning of a 30 kDa erythrocyte membrane protein associated with Rh (Rhesus)-blood-group-antigen expression. Biochem J 271:821–825

    PubMed Central  CAS  PubMed  Google Scholar 

  4. Chérif-Zahar B, Bloy C, Le Van Kim C et al (1990) Molecular cloning and protein structure of a human blood group Rh polypeptide. Proc Natl Acad Sci U S A 87:6243–6247

    Article  PubMed Central  PubMed  Google Scholar 

  5. Colin Y, Chérif-Zahar B, Le Van Kim C et al (1991) Genetic basis of the RhD-positive and RhD-negative blood group polymorphism as determined by Southern analysis. Blood 78:2747–2752

    CAS  PubMed  Google Scholar 

  6. Le Van Kim C, Mouro I, Chérif-Zahar B et al (1992) Molecular cloning and primary structure of the human blood group RhD polypeptide. Proc Natl Acad Sci U S A 89:10925–10929

    Article  Google Scholar 

  7. Chérif-Zahar B, Mattéi MG, Le Van Kim C et al (1991) Localization of the human Rh blood group gene structure to chromosome region 1p34.3-1p36.1 by in situ hybridization. Hum Genet 86:398–400

    Article  PubMed  Google Scholar 

  8. Arce MA, Thompson ES, Wagner S et al (1993) Molecular cloning of RhD cDNA derived from a gene present in RhD-positive, but not RhD-negative individuals. Blood 82:651–655

    CAS  PubMed  Google Scholar 

  9. Mouro I, Colin Y, Chérif-Zahar B et al (1993) Molecular genetic basis of the human Rhesus blood group system. Nat Genet 5:62–65

    Article  CAS  PubMed  Google Scholar 

  10. Flegel WA (2011) Molecular genetics and clinical applications for RH. Transfus Apher Sci 44:81–91

    Article  PubMed Central  PubMed  Google Scholar 

  11. Wang D, Lane C, Quillen K (2010) Prevalence of RhD variants, confirmed by molecular genotyping, in a multiethnic prenatal population. Am J Clin Pathol 134:438–442

    Article  PubMed  Google Scholar 

  12. Silvy M, Simon S, Gouvitsos J et al (2011) Weak D and DEL alleles detected by routine SNaPshot genotyping: identification of four novel RHD alleles. Transfusion 51:401–411

    Article  CAS  PubMed  Google Scholar 

  13. Fichou Y, Le Maréchal C, Jamet D et al (2013) Establishment of a medium-throughput approach for the genotyping of RHD variants and report of nine novel rare alleles. Transfusion 53:1821–1828

    Article  CAS  PubMed  Google Scholar 

  14. Gassner C, Meyer S, Frey BM et al (2013) Matrix-assisted laser desorption/ionisation, time-of-flight mass spectrometry-based blood group genotyping–the alternative approach. Transfus Med Rev 27:2–9

    Article  PubMed  Google Scholar 

  15. Granier T, Beley S, Chiaroni J et al (2013) A comprehensive survey of both RHD and RHCE allele frequencies in sub-Saharan Africa. Transfusion 53(Suppl 2):3009–3017

    CAS  PubMed  Google Scholar 

  16. Kappler-Gratias S, Auxerre C, Dubeaux I et al (2013) Systematic RH genotyping and variant identification in French donors of African origin. Blood Transfus 17:1–8

    Google Scholar 

  17. Maaskant-van Wijk PA, Faas BH et al (1998) Genotyping of RHD by multiplex polymerase chain reaction analysis of six RHD-specific exons. Transfusion 38:1015–1021

    Article  CAS  PubMed  Google Scholar 

  18. Fichou Y, Le Maréchal C, Bryckaert L et al (2013) A convenient qualitative and quantitative method to investigate RHD-RHCE hybrid genes. Transfusion 53(Suppl 2):2974–2982

    Google Scholar 

  19. Haer-Wigman L, Veldhuisen B, Jonkers R et al (2012) RHD and RHCE variant and zygosity genotyping via multiplex ligation-dependent probe amplification. Transfusion 53:1559–1574

    Article  PubMed  Google Scholar 

  20. Shimizu M, Kosaka N, Shimada T et al (2002) Universal fluorescent labeling (UFL) method for automated microsatellite analysis. DNA Res 9:173–178

    Article  CAS  PubMed  Google Scholar 

  21. Guo DC, Milewicz DM (2003) Methodology for using a universal primer to label amplified DNA segments for molecular analysis. Biotechnol Lett 25:2079–2083

    Article  CAS  PubMed  Google Scholar 

  22. Fichou Y, Chen JM, Le Maréchal C et al (2012) Weak D caused by a founder deletion in the RHD gene. Transfusion 52:2348–2355

    Article  CAS  PubMed  Google Scholar 

  23. Fichou Y, Génin E, Le Maréchal C et al (2008) Estimating the age of CFTR mutations predominantly found in Brittany (Western France). J Cyst Fibros 7:168–173

    Article  CAS  PubMed  Google Scholar 

  24. Casilli F, Di Rocco ZC, Gad S et al (2002) Rapid detection of novel BRCA1 rearrangements in high-risk breast-ovarian cancer families using multiplex PCR of short fluorescent fragments. Hum Mutat 20:218–226

    Article  CAS  PubMed  Google Scholar 

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Acknowledgements

This work was supported by the Institut National de la Santé et de la Recherche Médicale (Inserm) et l’Etablissement Français du Sang (EFS)—Bretagne.

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Correspondence to Yann Fichou .

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Fichou, Y., Férec, C. (2015). Molecular RHD-RHCE Analysis by Multiplex PCR of Short Fluorescent Fragments. In: Bugert, P. (eds) Molecular Typing of Blood Cell Antigens. Methods in Molecular Biology, vol 1310. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-2690-9_8

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  • DOI: https://doi.org/10.1007/978-1-4939-2690-9_8

  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-2689-3

  • Online ISBN: 978-1-4939-2690-9

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