Abstract
Oligomeric assemblies of the amyloid β-protein, Aβ, are thought to be the proximate neurotoxic agents in Alzheimer’s disease (AD). Oligomer formation is a complex process that produces a polydisperse population of metastable structures. For this reason, formal structure–activity correlations, both in vitro and in vivo, have been difficult to accomplish. An analytical solution to this problem was provided by the application of a photochemical cross-linking method to the Aβ assembly system. This method, photo-induced cross-linking of unmodified proteins (PICUP), enabled the quantitative determination of the oligomer size distribution. We report here the integration of PICUP with SDS-PAGE and alkaline extraction procedures to create a method for the isolation of pure populations of oligomers of defined order. This method has been used successfully to provide material for formal structure–activity studies of Aβ oligomers.
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References
Selkoe DJ (1991) The molecular pathology of Alzheimer’s disease. Neuron 6, 487–498.
Selkoe DJ (1994) Cell biology of the amyloid β-protein precursor and the mechanism of Alzheimer’s disease. Annu Rev Cell Biol 10, 373–403.
Haass C, and Selkoe DJ (2007) Soluble protein oligomers in neurodegeneration: lessons from the Alzheimer’s amyloid β-peptide. Nat Rev Mol Cell Biol 8, 101–112.
Kirkitadze MD, Bitan G, and Teplow DB (2002) Paradigm shifts in Alzheimer’s disease and other neurodegenerative disorders: the emerging role of oligomeric assemblies. J Neurosci Res 69, 567–577.
Walsh DM, and Selkoe DJ (2007) Aβ oligomers - a decade of discovery. J Neurochem 101, 1172–1184.
Roychaudhuri R, Yang M, Hoshi MM, and Teplow DB (2009) Amyloid β-protein assembly and Alzheimer disease. J Biol Chem 284, 4749–4753.
Shankar GM, Li S, Mehta TH, Garcia-Munoz A, Shepardson NE, Smith I, Brett FM, Farrell MA, Rowan MJ, Lemere CA, Regan CM, Walsh DM, Sabatini BL, and Selkoe DJ (2008) Amyloid-β protein dimers isolated directly from Alzheimer’s brains impair synaptic plasticity and memory. Nat Med 14, 837–842.
Lesne S, Koh MT, Kotilinek L, Kayed R, Glabe CG, Yang A, Gallagher M, and Ashe KH (2006) A specific amyloid-β protein assembly in the brain impairs memory. Nature 440, 352–357.
Lambert MP, Barlow AK, Chromy BA, Edwards C, Freed R, Liosatos M, Morgan TE, Rozovsky I, Trommer B, Viola KL, Wals P, Zhang C, Finch CE, Krafft GA, and Klein WL (1998) Diffusible, nonfibrillar ligands derived from Aβ1-42 are potent central nervous system neurotoxins. Proc Natl Acad Sci USA 95, 6448–6453.
Bitan G, Kirkitadze MD, Lomakin A, Vollers SS, Benedek GB, and Teplow DB (2003) Amyloid β-protein (Aβ) assembly: Aβ40 and Aβ42 oligomerize through distinct pathways. Proc Natl Acad Sci USA 100, 330–335.
Harper JD, Wong SS, Lieber CM, and Lansbury PT (1997) Observation of metastable Aβ amyloid protofibrils by atomic force microscopy. Chem Biol 4, 119–125.
Walsh DM, Lomakin A, Benedek GB, Condron MM, and Teplow DB (1997) Amyloid β-protein fibrillogenesis. Detection of a protofibrillar intermediate. J Biol Chem 272, 22364–22372.
Barghorn S, Nimmrich V, Striebinger A, Krantz C, Keller P, Janson B, Bahr M, Schmidt M, Bitner RS, Harlan J, Barlow E, Ebert U, and Hillen H (2005) Globular amyloid β-peptide1-42 oligomer - a homogenous and stable neuropathological protein in Alzheimer’s disease. J Neurochem 95, 834–847.
Hoshi M, Sato M, Matsumoto S, Noguchi A, Yasutake K, Yoshida N, and Sato K (2003) Spherical aggregates of β-amyloid (amylospheroid) show high neurotoxicity and activate tau protein kinase I/glycogen synthase kinase-3β. Proc Natl Acad Sci USA 100, 6370–6375.
Teplow DB (2006) Preparation of amyloid β-protein for structural and functional studies. Methods Enzymol 413, 20–33.
Bitan G, Lomakin A, and Teplow DB (2001) Amyloid β-protein oligomerization: prenucleation interactions revealed by photo-induced cross-linking of unmodified proteins. J Biol Chem 276, 35176–35184.
Fancy DA (2000) Elucidation of protein-protein interactions using chemical cross-linking or label transfer techniques. Curr Opin Chem Biol 4, 28–33.
Fancy DA, and Kodadek T (1999) Chemistry for the analysis of protein-protein interactions: Rapid and efficient cross-linking triggered by long wavelength light. Proc Natl Acad Sci USA 96, 6020–6024.
Jin Y, and Manabe T (2005) High-efficiency protein extraction from polyacrylamide gels for molecular mass measurement by matrix-assisted laser desorption/ionization-time of flight-mass spectrometry. Electrophoresis 26, 1019–1028.
Ono K, Condron MM, and Teplow DB (2009) Structure-neurotoxicity relationships of amyloid β-protein oligomers. Proc Natl Acad Sci USA 106, 14745–14750.
Acknowledgments
We gratefully acknowledge the support of NIH grants AG027818, NS038328, the Jim Easton Consortium for Alzheimer’s Drug Discovery and Biomarkers at UCLA, and the California Department of Public Health, Alzheimer’s Disease Program, grant #07-65806.
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Rosensweig, C., Ono, K., Murakami, K., Lowenstein, D.K., Bitan, G., Teplow, D.B. (2012). Preparation of Stable Amyloid β-Protein Oligomers of Defined Assembly Order. In: Sigurdsson, E., Calero, M., Gasset, M. (eds) Amyloid Proteins. Methods in Molecular Biology, vol 849. Humana Press. https://doi.org/10.1007/978-1-61779-551-0_3
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DOI: https://doi.org/10.1007/978-1-61779-551-0_3
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