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Plant Cell Vacuoles: Staining and Fluorescent Probes

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Plant Vacuolar Trafficking

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1789))

Abstract

In plant cells, vacuoles are extremely important for growth and development, and influence important cellular functions as photosynthesis, respiration, and transpiration. Plant cells contain lytic and storage vacuoles, whose size can be different depending on cell type and tissue developmental stage. One of the main roles of vacuoles is to regulate the cell turgor in response to different stimuli. Thus, studying the morphology, dynamics, and physiology of vacuole is fundamentally important to advance knowledge in plant cell biology at large. The availability of fluorescent probes allows marking vacuoles in multiple ways. These may be fast, when using commercially available chemical dyes, or relatively slow, in the case of specific genetically encoded markers based on proteins directed either to the membrane of the vacuole (tonoplast) or to the vacuole lumen. Any of these approaches provides useful information about the morphology and physiology of the vacuole.

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References

  1. Zhang C, Hicks GR, Raikhel NV (2014) Plant vacuole morphology and vacuolar trafficking. Front Plant Sci 5:476

    PubMed  PubMed Central  Google Scholar 

  2. Marty F (1999) Plant vacuoles. Plant Cell 11:587–600

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  3. Paris N, Stanley CM, Jones RL, Rogers JC (1996) Plant cells contain two functionally distinct vacuolar compartments. Cell 85:563–572

    Article  CAS  PubMed  Google Scholar 

  4. Di Sansebastiano GP, Paris N, Marc-Martin S, Neuhaus JM (2001) Regeneration of a lytic central vacuole and of neutral peripheral vacuoles can be visualized by green fluorescent proteins targeted to either type of vacuoles. Plant Physiol 126:78–86

    Article  PubMed  PubMed Central  Google Scholar 

  5. Gao XQ, Li CG, Wei PC, Zhang XY, Chen J, Wang XC (2005) The dynamic changes of tonoplasts in guard cells are important for stomatal movement in Vicia faba. Plant Physiol 139:1207–1216

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  6. Gao XQ, Wang XL, Ren F, Chen J, Wang XC (2009) Dynamics of vacuoles and actin filaments in guard cells and their roles in stomatal movement. Plant Cell Environ 32:1108–1116

    Article  CAS  PubMed  Google Scholar 

  7. Dubrovsky JG, Guttenberger M, Saralegui A, Napsucialy-Mendivil S, Voigt B, Baluska F, Menzel D (2006) Neutral red as a probe for confocal laser scanning microscopy studies of plant roots. Ann Bot 97:1127–1138

    Article  PubMed  PubMed Central  Google Scholar 

  8. Schwab B, Hulskamp M (2010) Neutral red staining for plant vacuoles. Cold Spring Harb Protoc 2010(6):pdb.prot4953

    Article  Google Scholar 

  9. Bolte S, Talbot C, Boutte Y, Catrice O, Read ND, Satiat-Jeunemaitre B (2004) FM-dyes as experimental probes for dissecting vesicle trafficking in living plant cells. J Microsc 214:159–173

    Article  CAS  PubMed  Google Scholar 

  10. Vida TA, Emr SD (1995) A new vital stain for visualizing vacuolar membrane dynamics and endocytosis in yeast. J Cell Biol 128:779–792

    Article  CAS  PubMed  Google Scholar 

  11. Hunter PR, Craddock CP, Di Benedetto S, Roberts LM, Frigerio L (2007) Fluorescent reporter proteins for the tonoplast and the vacuolar lumen identify a single vacuolar compartment in Arabidopsis cells. Plant Physiol 145:1371–1382

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  12. Nelson BK, Cai X, Nebenfuhr A (2007) A multicolored set of in vivo organelle markers for co-localization studies in Arabidopsis and other plants. Plant J 51:1126–1136

    Article  CAS  PubMed  Google Scholar 

  13. Fluckiger R, De Caroli M, Piro G, Dalessandro G, Neuhaus JM, Di Sansebastiano GP (2003) Vacuolar system distribution in Arabidopsis tissues, visualized using GFP fusion proteins. J Exp Bot 54:1577–1584

    Article  CAS  PubMed  Google Scholar 

  14. Di Sansebastiano GP, Paris N, Marc-Martin S, Neuhaus JM (1998) Specific accumulation of GFP in a non-acidic vacuolar compartment via a C-terminal propeptide-mediated sorting pathway. Plant J 15:449–457

    Article  PubMed  Google Scholar 

  15. Avila EL, Zouhar J, Agee AE, Carter DG, Chary SN, Raikhel NV (2003) Tools to study plant organelle biogenesis. Point mutation lines with disrupted vacuoles and high-speed confocal screening of green fluorescent protein-tagged organelles. Plant Physiol 133:1673–1676

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  16. Geldner N, Denervaud-Tendon V, Hyman DL, Mayer U, Stierhof YD, Chory J (2009) Rapid, combinatorial analysis of membrane compartments in intact plants with a multicolor marker set. Plant J 59:169–178

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  17. Li JF, Park E, von Arnim AG, Nebenfuhr A (2009) The FAST technique: a simplified Agrobacterium-based transformation method for transient gene expression analysis in seedlings of Arabidopsis and other plant species. Plant Methods 5:6

    Article  CAS  PubMed  PubMed Central  Google Scholar 

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Acknowledgment

We acknowledge the support by the Chemical Sciences, Geosciences and Biosciences Division, Office of Basic Energy Sciences, Office of Science, US Department of Energy (award number DE-FG02-91ER20021), and the National Science Foundation (MCB1243792).

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Correspondence to Federica Brandizzi .

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Stefano, G., Renna, L., Brandizzi, F. (2018). Plant Cell Vacuoles: Staining and Fluorescent Probes. In: Pereira, C. (eds) Plant Vacuolar Trafficking. Methods in Molecular Biology, vol 1789. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-7856-4_5

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  • DOI: https://doi.org/10.1007/978-1-4939-7856-4_5

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  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-7855-7

  • Online ISBN: 978-1-4939-7856-4

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