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Mouse Genome Informatics (MGI) Is the International Resource for Information on the Laboratory Mouse

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Eukaryotic Genomic Databases

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1757))

Abstract

Mouse Genome Informatics (MGI, http://www.informatics.jax.org/) web resources provide free access to meticulously curated information about the laboratory mouse. MGI’s primary goal is to help researchers investigate the genetic foundations of human diseases by translating information from mouse phenotypes and disease models studies to human systems. MGI provides comprehensive phenotypes for over 50,000 mutant alleles in mice and provides experimental model descriptions for over 1500 human diseases. Curated data from scientific publications are integrated with those from high-throughput phenotyping and gene expression centers. Data are standardized using defined, hierarchical vocabularies such as the Mammalian Phenotype (MP) Ontology, Mouse Developmental Anatomy and the Gene Ontologies (GO). This chapter introduces you to Gene and Allele Detail pages and provides step-by-step instructions for simple searches and those that take advantage of the breadth of MGI data integration.

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References

  1. Blake JA, Eppig JT, Kadin JA, Richardson JE, Smith CL, Bult CJ, Mouse Genome Database Group (2017) Mouse Genome Database (MGD)-2017: community knowledge resource for the laboratory mouse. Nucleic Acids Res 45:D723–D729

    Article  CAS  PubMed  Google Scholar 

  2. Finger JH, Smith CM, Hayamizu TF, McCright IJ et al (2017) The mouse Gene Expression Database (GXD): 2017 update. Nucleic Acids Res 45:D730–D736

    Article  CAS  PubMed  Google Scholar 

  3. Bult CJ, Krupke DM, Begley DA et al (2015) Mouse Tumor Biology (MTB): a database of mouse models for human cancer. Nucleic Acids Res 43:D818–D824

    Article  CAS  PubMed  Google Scholar 

  4. Eppig JT, Motenko H, Richardson JE et al (2015) The International Mouse Strain Resource (IMSR): cataloging worldwide mouse and ES cell line resources. Mamm Genome 26:448–455

    Article  PubMed  PubMed Central  Google Scholar 

  5. Smith C, Eppig JT (2015) Expanding the mammalian phenotype ontology to support automated exchange of high throughput mouse phenotyping data generated by large-scale mouse knockout screens. J Biomed Semantics 6:11

    Article  PubMed  PubMed Central  Google Scholar 

  6. Drabkin HJ, Christie KR, Dolan ME et al (2015) Application of comparative biology in GO functional annotation: the mouse model. Mamm Genome 26:574–583

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  7. Köhler S, Vasilevsky NA, Engelstad M et al (2017) The Human Phenotype Ontology in 2017. Nucleic Acids Res 45:D865–D876

    Article  CAS  PubMed  Google Scholar 

  8. Hayamizu TF, Baldock RA, Ringwald M (2015) Mouse anatomy ontologies: enhancements and tools for exploring and integrating biomedical data. Mamm Genome 26:422–430

    Article  PubMed  PubMed Central  Google Scholar 

  9. Kibbe WA, Arze C, Felix V et al (2014) Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data. Nucleic Acids Res 43:D1071–D1078

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  10. Motenko H, Neuhauser SB, O’Keefe M et al (2015) MouseMine: a new data warehouse for MGI. Mamm Genome 26:325–330

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  11. Theiler K (1989) The house mouse: atlas of embryonic development. Springer, New York

    Book  Google Scholar 

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Acknowledgments

These MGI projects are supported by NIH/NHGRI grants: HG000330 and HG002273, NIH/NICHD grant: HD062499, and NIH/NCI CA089713.

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Correspondence to David R. Shaw .

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Law, M., Shaw, D.R. (2018). Mouse Genome Informatics (MGI) Is the International Resource for Information on the Laboratory Mouse. In: Kollmar, M. (eds) Eukaryotic Genomic Databases. Methods in Molecular Biology, vol 1757. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-7737-6_7

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  • DOI: https://doi.org/10.1007/978-1-4939-7737-6_7

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  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-7736-9

  • Online ISBN: 978-1-4939-7737-6

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