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13CO2 Labeling and Mass Spectral Analysis of Photorespiration

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Photorespiration

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1653))

Abstract

Photorespiratory metabolism is compartmented over the chloroplast, peroxisome, cytosol, and mitochondria, and due to its complex structure it is often the case that metabolite levels alone are not able to fully describe photorespiration. Metabolic fluxes represent a more meaningful biological description of metabolism, adding to metabolite levels and often revealing different aspects of the system such as the presence of inactive metabolic pools of photorespiratory intermediates. We describe here a protocol for the 13CO2 feeding of Arabidopsis and tracing of 13C enriched metabolites for metabolic fluxes estimation, which allows high throughput analysis of labeling pattern on different metabolites involved in photorespiration and downstream processes.

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References

  1. Bauwe H, Hagemann M, Kern R, Timm S (2012) Photorespiration has a dual origin and manifold links to central metabolism. Curr Opin Plant Biol 15(3):269–275. doi:10.1016/j.pbi.2012.01.008

    Article  CAS  PubMed  Google Scholar 

  2. Bauwe H, Hagemann M, Fernie AR (2010) Photorespiration: players, partners and origin. Trends Plant Sci 15(6):330–336. doi:10.1016/j.tplants.2010.03.006

    Article  CAS  PubMed  Google Scholar 

  3. Florian A, Araújo WL, Fernie AR (2013) New insights into photorespiration obtained from metabolomics. Plant Biol 15(4):656–666. doi:10.1111/j.1438-8677.2012.00704.x

    Article  CAS  PubMed  Google Scholar 

  4. Foyer CH, Bloom AJ, Queval G, Noctor G (2009) Photorespiratory metabolism: genes, mutants, energetics, and redox signaling. Ann Rev Plant Biol 60(1):455–484. doi:10.1146/annurev.Arplant.043008.091948

    Article  CAS  Google Scholar 

  5. Obata T, Florian A, Timm S, Bauwe H, Fernie AR (2016) On the metabolic interactions of (photo)respiration. J Exp Bot 67(10):3003–3014. doi:10.1093/jxb/erw128

    Article  CAS  PubMed  Google Scholar 

  6. Szecowka M, Heise R, Tohge T, Nunes-Nesi A, Vosloh D, Huege J, Feil R, Lunn J, Nikoloski Z, Stitt M, Fernie AR, Arrivault S (2013) Metabolic fluxes in an illuminated Arabidopsis rosette. Plant Cell 25(2):694–714. doi:10.1105/tpc.112.106989

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  7. Heise R, Arrivault S, Szecowka M, Tohge T, Nunes-Nesi A, Stitt M, Nikoloski Z, Fernie AR (2014) Flux profiling of photosynthetic carbon metabolism in intact plants. Nat Protoc 9(8):1803–1824. doi:10.1038/nprot.2014.115

    Article  CAS  PubMed  Google Scholar 

  8. Romisch-Margl W, Schramek N, Radykewicz T, Ettenhuber C, Eylert E, Huber C, Romisch-Margl L, Schwarz C, Dobner M, Demmel N, Winzenhorlein B, Bacher A, Eisenreich W (2007) 13CO2 as a universal metabolic tracer in isotopologue perturbation experiments. Phytochemistry 68(16–18):2273–2289. doi:10.1016/j.phytochem.2007.03.034

    Article  PubMed  Google Scholar 

  9. Eisenreich W, Bacher A (2007) Advances of high-resolution NMR techniques in the structural and metabolic analysis of plant biochemistry. Phytochemistry 68(22–24):2799–2815. doi:10.1016/j.phytochem.2007.09.028

    Article  CAS  PubMed  Google Scholar 

  10. Ma F, Jazmin LJ, Young JD, Allen DK (2014) Isotopically nonstationary 13C flux analysis of changes in Arabidopsis thaliana leaf metabolism due to high light acclimation. Proc Natl Acad Sci U S A 111(47):16967–16972. doi:10.1073/pnas.1319485111

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  11. Boyes DC, Zayed AM, Ascenzi R, McCaskill AJ, Hoffman NE, Davis KR, Gorlach J (2001) Growth stage-based phenotypic analysis of Arabidopsis: a model for high throughput functional genomics in plants. Plant Cell 13(7):1499–1510. doi:10.1105/tpc.13.7.1499

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  12. Lisec J, Schauer N, Kopka J, Willmitzer L, Fernie AR (2006) Gas chromatography mass spectrometry-based metabolite profiling in plants. Nat Protoc 1(1):387–396. doi:10.1038/nprot.2006.59

    Article  CAS  PubMed  Google Scholar 

  13. Luedemann A, Malotky L, Erban A, Kopka J (2012) TagFinder: preprocessing software for the fingerprinting and the profiling of gas chromatography–mass spectrometry based metabolome analyses. Methods Mol Biol 860:255–286. doi:10.1007/978-1-61779-594-7_16

    Article  CAS  PubMed  Google Scholar 

  14. Hasunuma T, Harada K, Miyazawa S-I, Kondo A, Fukusaki E, Miyake C (2010) Metabolic turnover analysis by a combination of in vivo 13C-labelling from 13CO2 and metabolic profiling with CE-MS/MS reveals rate-limiting steps of the C3 photosynthetic pathway in Nicotiana tabacum leaves. J Exp Bot 61(4):1041–1051. doi:10.1093/jxb/erp374

    Article  CAS  PubMed  Google Scholar 

  15. Huege J, Goetze J, Dethloff F, Junker B, Kopka J (2014) Quantification of stable isotope label in metabolites via mass spectrometry. Methods Mol Biol 1056:213–223. doi:10.1007/978-1-62703-592-7_20

    Article  PubMed  Google Scholar 

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Acknowledgement

This work was financially supported by the Max Planck Society. We thank National Council for Scientific and Technological Development CNPq-Brazil for financially supporting LPS.

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Correspondence to Takayuki Tohge .

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de Souza, L.P., Szecówka, M., Fernie, A.R., Tohge, T. (2017). 13CO2 Labeling and Mass Spectral Analysis of Photorespiration. In: Fernie, A., Bauwe, H., Weber, A. (eds) Photorespiration. Methods in Molecular Biology, vol 1653. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-7225-8_11

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  • DOI: https://doi.org/10.1007/978-1-4939-7225-8_11

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  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-7224-1

  • Online ISBN: 978-1-4939-7225-8

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