Abstract
Histamine is a biogenic amine that has an inherent biological importance in many physiological functions. With the new genomic era we are facing, personalized care and treatment is becoming one of the major focal points in research. This chapter will focus on the tools available to assess polymorphisms and genetic variations in the human histamine receptor family. The genetic composition of this receptor family is discussed and explained. Methodologies in genetic analysis are described, the use of bioinformatics information available is explored, and the use of Hapmap data and how it can be used in genome-wide association studies and linkage analysis is explained. Bioinformatics and molecular biology prove to be essential tools in investigating genetic associations between genotype and disease. This area of research is of utmost importance for identification of biological markers and is essential in the search to develop personalized medication.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Leurs R, Vischer HF, Wijtmans M et al (2011) En route to new blockbuster anti-histamines: surveying the offspring of the expanding histamine receptor family. Trends Pharmacol Sci 32:250–257
Lim HD, Adami M, Guaita E et al (2009) Pharmacological characterization of the new histamine H4 receptor agonist VUF 8430. Br J Pharmacol 157:34–43
Zhu Y, Michalovich D, Wu H et al (2001) Cloning, expression, and pharmacological characterization of a novel human histamine receptor. Mol Pharmacol 59:434–441
Nakamura T, Itadani H, Hidaka Y et al (2000) Molecular cloning and characterization of a new human histamine receptor, HH4R. Biochem Biophys Res Commun 279:615–620
Oda T, Morikawa N, Saito Y et al (2000) Molecular cloning and characterization of a novel type of histamine receptor preferentially expressed in leukocytes. J Biol Chem 275:36781–36786
Leurs R, Chazot PL, Shenton FC et al (2009) Molecular and biochemical pharmacology of the histamine H4 receptor. Br J Pharmacol 157:14–23
Coge F, Guenin SP, Rique H et al (2001) Structure and expression of the human histamine H4-receptor gene. Biochem Biophys Res Commun 284:301–309
Liu C, Ma X, Jiang X et al (2001) Cloning and pharmacological characterization of a fourth histamine receptor (H(4)) expressed in bone marrow. Mol Pharmacol 59:420–426
Morse KL, Behan J, Laz TM et al (2001) Cloning and characterization of a novel human histamine receptor. J Pharmacol Exp Ther 296:1058–1066
Micallef S, Stark H, Sasse A (2013) Polymorphisms and genetic linkage of histamine receptors. Life Sci 93:487–494
Panula P, Chazot PL, Cowart M et al (2015) International union of basic and clinical pharmacology. XCVIII. Histamine receptors. Pharmacol Rev 67:601–655
Consortium IH (2003) The international HapMap project. Nature 426:789–796
Gabriel SB, Schaffner SF et al (2002) The structure of haplotype blocks in the human genome. Science 296:2225–2229
Hardy J, Singleton A (2009) Genomewide association studies and human disease. N Engl J Med 360:1759–1768
Corvin A, Craddock N, Sullivan PF (2010) Genome-wide association studies: a primer. Psychol Med 40:1063–1077
Bush WS, Haines J (2010) Overview of linkage analysis in complex traits. Curr Protoc Hum Genet Chapter 1:Unit 1.9.1–18
Rosmond R (2003) Association studies of genetic polymorphisms in central obesity: a critical review. Int J Obes Relat Metab Disord 27:1141–1151
Schumacher J, Laje G, Abou Jamra R et al (2009) The DISC locus and schizophrenia: evidence from an association study in a central European sample and from a meta-analysis across different European populations. Hum Mol Genet 18:2719–2727
Teufel A (2015) Bioinformatics and database resources in hepatology. J Hepatol 62:712–719
Knudsen S (1999) Promoter2.0: for the recognition of PolII promoter sequences. Bioinformatics 15:356–361
Fickett JW, Hatzigeorgiou AG (1997) Eukaryotic promoter recognition. Genome Res 7:861–878
Toth-Petroczy A, Szilagyi A, Ronai Z et al (2006) Validation of a tentative microsatellite marker for the dopamine D4 receptor gene by capillary gel electrophoresis. J Chromatogr A 1130:201–205
Queller DC, Strassmann JE, Hughes CR (1993) Microsatellites and kinship. Trends Ecol Evol 8:285–288
Varela MA, Amos W (2010) Heterogeneous distribution of SNPs in the human genome: microsatellites as predictors of nucleotide diversity and divergence. Genomics 95:151–159
Brouwer JR, Willemsen R, Oostra BA (2009) Microsatellite repeat instability and neurological disease. Bioessays 31:71–83
Micallef S, Quinn E, Morris D, Sasse A (2012) Microsatellite repeat expansions in human histamine(4) receptor gene. Inflamm Res 61:S52–S52
Micallef S, Sasse A (2014) Characterisation of the promoter region of the human histamine H4 receptor (hH4R). Inflamm Res 63:S21–S21
Micallef S (2013) PhD thesis, Characterization of polymorphisms on the promoter region of the human histamine H4 receptor (Trinity College, University of Dublin, Ireland).
Wei Z, Wang L, Yu T et al (2013) Histamine H4 receptor polymorphism: a potential predictor of risperidone efficacy. J Clin Psychopharmacol 33:221–225
Simon T, Semsei AF, Ungvári I et al (2012) Asthma endophenotypes and polymorphisms in the histamine receptor HRH4 gene. Int Arch Allergy Immunol 159:109–120
He GH, Lu J, Shi PP et al (2013) Polymorphisms of human histamine receptor H4 gene are associated with breast cancer in Chinese Han population. Gene 519:260–265
Arisawa T, Tahara T, Ozaki K et al (2012) Association between common genetic variant of HRH2 and gastric cancer risk. Int J Oncol 41:497–503
Mancama D, Arranz MJ, Munro J et al (2002) Investigation of promoter variants of the histamine 1 and 2 receptors in schizophrenia and clozapine response. Neurosci Lett 333:207–211
Magnin S, Viel E, Baraquin A et al (2011) A multiplex SNaPshot assay as a rapid method for detecting KRAS and BRAF mutations in advanced colorectal cancers. J Mol Diagn 13:485–492
Yim E-Y, Kang H-R, Jung J-W et al (2013) CYP1A2 polymorphism and theophylline clearance in Korean non-smoking asthmatics. Asia Pac Allergy 3:231–240
Reuter M, Jeste N, Klein T et al (2007) Association of THR105Ile, a functional polymorphism of histamine N-methyltransferase (HNMT), with alcoholism in German Caucasians. Drug Alcohol Depend 87:69–75
Nguyen LV, Giannetti S, Warren-Smith S et al (2014) Genotyping Single Nucleotide Polymorphisms Using Different Molecular Beacon Multiplexed within a Suspended Core Optical Fiber. Sensors (Basel, Switzerland) 14:14488–14499
Boer K, Helinger E, Helinger A et al (2008) Decreased expression of histamine H1 and H4 receptors suggests disturbance of local regulation in human colorectal tumours by histamine. Eur J Cell Biol 87:227–236
Glatzer F, Gschwandtner M, Ehling S et al (2013) Histamine induces proliferation in keratinocytes from patients with atopic dermatitis through the histamine 4 receptor. J Allergy Clin Immunol 132:1358–1367
Pedersen AG, Baldi P, Chauvin Y et al (1999) The biology of eukaryotic promoter prediction—a review. Comput Chem 23:191–207
Forabosco P, Falchi M, Devoto M (2005) Statistical tools for linkage analysis and genetic association studies. Expert Rev Mol Diagn 5:781–796
Barrett JC, Fry B, Maller J et al (2005) Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics 21:263–265
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2017 Springer Science+Business Media LLC
About this protocol
Cite this protocol
Micallef, S., Sasse, A. (2017). Methodologies to Identify and Analyze Genetic Polymorphisms for Human Histamine Receptors. In: Tiligada, E., Ennis, M. (eds) Histamine Receptors as Drug Targets. Methods in Pharmacology and Toxicology. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-6843-5_1
Download citation
DOI: https://doi.org/10.1007/978-1-4939-6843-5_1
Published:
Publisher Name: Humana Press, New York, NY
Print ISBN: 978-1-4939-6841-1
Online ISBN: 978-1-4939-6843-5
eBook Packages: Springer Protocols