Skip to main content

Large-Scale Overproduction and Purification of Recombinant Histone Deacetylase 8 (HDAC8) from the Human-Pathogenic Flatworm Schistosoma mansoni

  • Protocol
  • First Online:
Histone Deacetylases

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1436))

Abstract

Epigenetic mechanisms underlie the morphological transformations and shifts in virulence of eukaryotic pathogens. The targeting of epigenetics-driven cellular programs thus represents an Achilles’ heel of human parasites. Today, zinc-dependent histone deacetylases (HDACs) belong to the most explored epigenetic drug targets in eukaryotic parasites. Here, we describe an optimized protocol for the large-scale overproduction and purification of recombinant smHDAC8, an emerging epigenetic drug target in the multicellular human-pathogenic flatworm Schistosoma mansoni. The strategy employs the robustness of recombinant expression in Escherichia coli together with initial purification through a poly-histidine affinity tag that can be removed by the thrombin protease. This protocol is divided into two steps: (1) large-scale production of smHDAC8 in E. coli, and (2) purification of the target smHDAC8 protein through multiple purification steps.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

eBook
USD 39.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 54.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

References

  1. Brown M (2011) Schistosomiasis. Clin Med 11(5):479–482

    Article  Google Scholar 

  2. Ross A, Bartley P, Sleigh A et al (2002) Schistosomiasis. N Engl J Med 346(16):1212–1220

    Article  PubMed  Google Scholar 

  3. Gray D, Ross A, Li Y, Mcmanus D (2011) Diagnosis and management of schistosomiasis. BMJ 342:2651

    Article  Google Scholar 

  4. Dömling A, Khoury K (2010) Praziquantel and schistosomiasis. ChemMedChem 5(9):1420–1434

    Article  PubMed  Google Scholar 

  5. Doenhoff M, Cioli D, Utzinger J (2008) Praziquantel: mechanisms of action, resistance and new derivatives for schistosomiasis. Curr Opin Infect Dis 21:659–667

    Article  CAS  PubMed  Google Scholar 

  6. Doenhoff M, Kusel J, Coles G, Cioli D (2002) Resistance of Schistosoma mansoni to praziquantel: is there a problem? Trans R Soc Trop Med Hyg 96(5):465–469

    Article  CAS  PubMed  Google Scholar 

  7. Li Z, Zhu W (2014) Targeting histone deacetylases for cancer therapy: from molecular mechanisms to clinical implications. Int J Biol Sci 10(7):757–770

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  8. Campbell R, Tummino P (2014) Cancer epigenetics drug discovery and development: the challenge of hitting the mark. J Clin Investig 124(1):64–69

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  9. West A, Johnstone R (2014) New and emerging HDAC inhibitors for cancer treatment. J Clin Investig 124(1):30–39

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  10. Marek M, Kannan S, Hauser A et al (2013) Structural basis for the inhibition of histone deacetylase 8 (HDAC8), a key epigenetic player in the blood fluke Schistosoma mansoni. PLoS Pathog 9(9), e100364

    Article  Google Scholar 

  11. Stolfa D, Marek M, Lancelot J et al (2014) Molecular basis for the antiparasitic activity of a mercaptoacetamide derivative that inhibits histone deacetylase 8 (HDAC8) from the human pathogen Schistosoma mansoni. J Mol Biol 426(20):3442–3453

    Article  CAS  PubMed  Google Scholar 

  12. Kannan S, Melesina J, Hauser A et al (2014) Discovery of inhibitors of Schistosoma mansoni HDAC8 by combining homology modeling, virtual screening, and in vitro validation. J Chem Inf Model 54(10):3005–3019

    Article  CAS  PubMed  Google Scholar 

  13. Diebold M-L, Fribourg S, Koch M, Metzger T, Romier C (2011) Deciphering correct strategies for multiprotein complex assembly by co-expression: application to complexes as large as the histone octamer. J Struct Biol 175(2):178–188

    Article  CAS  PubMed  Google Scholar 

  14. Olson D, Udeshi N, Wolfson N et al (2014) An unbiased approach to identify endogenous substrates of “histone” deacetylase 8. ACS Chem Biol 9(10):2210–2216

    Article  CAS  PubMed  PubMed Central  Google Scholar 

Download references

Acknowledgements

This work and the authors of this manuscript have been supported by funding from the European Union’s Seventh Framework Programme for research, technological development and demonstration under grant agreements nos. 241865 (SEtTReND) and 602080 (A-ParaDDisE). The authors are supported by institutional funds from the Centre National de la Recherche Scientifique (CNRS), the Institut National de la Santé et de la Recherche Médicale (INSERM), the Université de Strasbourg and the Université de Lille 2, the French Infrastructure for Integrated Structural Biology (FRISBI; ANR-10-INSB-05-01), and by Instruct as part of the European Strategy Forum on Research Infrastructures (ESFRI).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Christophe Romier .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2016 Springer Science+Business Media New York

About this protocol

Cite this protocol

Marek, M., Shaik, T.B., Duclaud, S., Pierce, R.J., Romier, C. (2016). Large-Scale Overproduction and Purification of Recombinant Histone Deacetylase 8 (HDAC8) from the Human-Pathogenic Flatworm Schistosoma mansoni . In: Sarkar, S. (eds) Histone Deacetylases. Methods in Molecular Biology, vol 1436. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-3667-0_8

Download citation

  • DOI: https://doi.org/10.1007/978-1-4939-3667-0_8

  • Published:

  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-3665-6

  • Online ISBN: 978-1-4939-3667-0

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics