Abstract
Histone deacetylases (HDACs) have a central role in the regulation of gene expression, which undergoes alternative splicing during embryonic stem cell (ES) cell differentiation. Alternative splicing gives rise to vast diversity over gene information, arousing public concerns in the last decade. In this chapter, we describe a strategy to detect HDAC7 alternative splicing and analyze its function on ES cell differentiation.
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References
Sun X et al (2015) SplicingTypesAnno: annotating and quantifying alternative splicing events for RNA-Seq data. Comput Methods Programs Biomed 119(1):53–62, PubMed: 25720307
Lee JH, Hart SR, Skalnik DG (2004) Histone deacetylase activity is required for embryonic stem cell differentiation. Genesis 38(1):32–38, PubMed:14755802
Grozinger CM, Hassig CA, Schreiber SL (1999) Three proteins define a class of human histone deacetylases related to yeast Hda1p. Proc Natl Acad Sci U S A 96(9):4868–4873, PubMed: 10220385
Margariti A et al (2009) Splicing of HDAC7 modulates the SRF-myocardin complex during stem-cell differentiation towards smooth muscle cells. J Cell Sci 122(Pt 4):460–470, PubMed: 19174469
Tang Z et al (2012) Differentiation of multipotent vascular stem cells contributes to vascular diseases. Nat Commun 3:875, PubMed: 22673902
Haberland M et al (2009) The many roles of histone deacetylases in development and physiology: implications for disease and therapy. Nat Rev Genet 10(1):32–42, PubMed: 19065135
Kato HI et al (2004) Histone deacetylase 7 associates with hypoxia-inducible factor 1alpha and increases transcriptional activity. J Biol Chem 279(40):41966–41974, PubMed: 15280364
High FA et al (2007) An essential role for Notch in neural crest during cardiovascular development and smooth muscle differentiation. J Clin Invest 117(2):353–363, PubMed: 17273555
Acknowledgement
This study was funded by British Heart Foundation project grant PG13-63-30419.
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Yang, J., Margariti, A., Zeng, L. (2016). Analysis of Histone Deacetylase 7 (HDAC7) Alternative Splicing and Its Role in Embryonic Stem Cell Differentiation Toward Smooth Muscle Lineage. In: Sarkar, S. (eds) Histone Deacetylases. Methods in Molecular Biology, vol 1436. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-3667-0_7
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DOI: https://doi.org/10.1007/978-1-4939-3667-0_7
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Publisher Name: Humana Press, New York, NY
Print ISBN: 978-1-4939-3665-6
Online ISBN: 978-1-4939-3667-0
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