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Molecular Analyses of Transgenic Plants

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Recombinant Proteins from Plants

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1385))

Abstract

One of the major challenges in plant molecular biology is to generate transgenic plants that express transgenes stably over generations. Here, we describe some routine methods to study transgene locus structure and to analyze transgene expression in plants: Southern hybridization using DIG chemiluminescent technology for characterization of transgenic locus, SYBR Green-based real-time RT-PCR to measure transgene transcript level, and protein immunoblot analysis to evaluate accumulation and stability of transgenic protein product in the target tissue.

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References

  1. Kohli A, Melendi PG, Abranches R et al (2006) The quest to understand the basis and mechanisms that control expression of introduced transgenes in crop plants. Plant Signal Behav 1:185–195

    Article  PubMed  PubMed Central  Google Scholar 

  2. Nagaya S, Kato K, Ninomiya Y et al (2005) Expression of randomly integrated single complete copy transgenes does not vary in Arabidopsis thaliana. Plant Cell Physiol 46:438–444

    Article  CAS  PubMed  Google Scholar 

  3. Southern E (1975) Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol 98:503–511

    Article  CAS  PubMed  Google Scholar 

  4. Neuhaus-Url G, Neuhaus G (1993) The use of the nonradioactive digoxigenin chemiluminescent technology for plant genomic Southern blot hybridization: a comparison with radioactivity. Transgenic Res 2:115–120

    Article  Google Scholar 

  5. Engler-Blum G, Meier M, Frank J, Muller GA (1993) Reduction of background problems in nonradioactive northern and southern blot analysis enables higher sensitivity than 32P-based hybridizations. Anal Biochem 210:235–244

    Article  CAS  PubMed  Google Scholar 

  6. Dietzgen RG, Abedina M, Higgins CM et al (1999) Nonradioactive detection of transgenes in plant genomic southern blots: a method using DIG chemiluminescent technology. Biochemica 1:19–20

    Google Scholar 

  7. Bako A, Gell G, Balazs E (2010) Quantification of transgene expression in maize (Zea mays L.) throughout the vegetation period. Plant Breed 130:41–45. doi:10.1111/j.1439-0523.2010.01804.x

    Article  Google Scholar 

  8. Udvardi MK, Czechowski T, Scheible WR (2008) Eleven golden rules of quantitative RT-PCR. Plant Cell 20:1736–1737

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  9. Pfaffl MW (2001) A new mathematical model for relative quantification in real-time RT–PCR. Nucleic Acids Res 29, e45

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  10. Valasek MA, Repa JJ (2005) The power of real-time PCR. Adv Physiol Educ 29:151–159

    Article  PubMed  Google Scholar 

  11. Renart J, Reiser J, Stark GR (1979) Transfer of proteins from gels to diazobenzyloxymethyl-paper and detection with antisera: a method for studying antibody specificity and antigen structure. Proc Natl Acad Sci U S A 76:3116–3120

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  12. Roche (2000) DIG application manual for filter hybridization. Roche Diagnostic GmbH, Mannheim

    Google Scholar 

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Acknowledgements

The authors would like to thank Lina Torrizo, Marina Manzanilla, and Maria Gina Borja for help with rice transformation. Work at the GTL is supported by HarvestPlus.

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Correspondence to Ajay Kohli .

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Trijatmiko, K.R., Arines, F.M., Oliva, N., Slamet-Loedin, I.H., Kohli, A. (2016). Molecular Analyses of Transgenic Plants. In: MacDonald, J., Kolotilin, I., Menassa, R. (eds) Recombinant Proteins from Plants. Methods in Molecular Biology, vol 1385. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-3289-4_15

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  • DOI: https://doi.org/10.1007/978-1-4939-3289-4_15

  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-3288-7

  • Online ISBN: 978-1-4939-3289-4

  • eBook Packages: Springer Protocols

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