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Genome-Wide Genetic Study in Autoimmune Disease-Prone Mice

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Arthritis Research

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1142))

Abstract

Mouse models of autoimmune diseases provide invaluable insights into the cellular and molecular bases of autoimmunity. Genetic linkage studies focusing on their abnormal quantitative phenotypes in relation to the loss of self-tolerance will lead to the identification of polymorphic genes that play pivotal roles in the genetic predisposition to autoimmunity. In this chapter, we first overview the basic concepts in the statistical genetics and then provide guides to genotyping microsatellite DNA markers and to quantitative trait loci mapping using a MAPMAKER program.

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References

  1. Falconer DS, Mackay TFC (1996) Threshold character. In: Introduction to quantitative genetics, Part 18 4th edn, Pearson Education Limited, Essex England, pp 295–311

    Google Scholar 

  2. Stansfield WD (1982) Quantitative genetics and breeding principles. In: Theory and problems of genetics 4th Edn, Schaums Outline Series. McGraw-Hill, New York, NY, pp 213–247

    Google Scholar 

  3. Stansfield WD (1982) Theory and problems of genetics. McGraw-Hill, New York, NY

    Google Scholar 

  4. Lander ES, Green P, Abrahamson J, Barlow A, Daly MJ, Lincoln SE, Newburg L (1987) MAPMAKER: an interactive computer package for constructing and natural populations. Genomics 1:174–181

    Article  CAS  PubMed  Google Scholar 

  5. Peterson A, Lander ES, Hewitt J, Peterson S, Tanksley S (1988) Resolution of quantitative traits into Mendelian factors using a complete RFLP linkage maps. Nature 335:721–726

    Article  PubMed  Google Scholar 

  6. Kono DH, Burlingame RW, Owens DG, Kuramochi A, Balderas RS, Balomenos D, Theofilopoulos AN (1994) Lupus susceptibility loci in New Zealand mice. Proc Natl Acad Sci U S A 91:10168–10172

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  7. Drake CG, Babcock SK, Palmer E, Kotzin BL (1994) Genetic analysis of the NZB contribution to lupus-like autoimmune disease in (NZB x NZW) F1 mice. Proc Natl Acad Sci U S A 91:4062–4066

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  8. Rozzo SJ, Allard JD, Choubey D, Vyse TJ, Izui S, Peltz G, Kotzin BL (2001) Evidence for an interferon-inducible gene, Ifi202, in the susceptibility to systemic lupus. Immunity 15:435–443

    Article  CAS  PubMed  Google Scholar 

  9. Hirose S, Sekigawa I, Ozaki S, Sato H, Shirai T (1984) Genetic regulation of hypergammaglobulinaemia and the correlation to autoimmune traits in (NZB x NZW) F1 hybrid. Clin Exp Immunol 58:694–702

    CAS  PubMed Central  PubMed  Google Scholar 

  10. Ochiai K, Ozaki S, Tanino A, Watanabe S, Ueno T, Mitsui K, Toei J, Inada Y, Hirose S, Shirai T, Nishimura H (2000) Genetic regulation of anti-erythrocyte autoantibodies and splenomegaly in autoimmune hemolytic anemia-prone New Zealand Black mice. Int Immunol 12:1–8

    Article  CAS  PubMed  Google Scholar 

  11. Jiang Y, Hirose S, Hammano Y, Kodera S, Tsurui H, Abe M, Terashima K, Ishikawa S, Shirai T (1997) Mapping of a gene for the increased susceptibility of B1 cells to Mott cell formation in murine autoimmune disease. J Immunol 158:992–997

    CAS  PubMed  Google Scholar 

  12. Fujii T, Iida Y, Yomogida M, Ikeda K, Haga T, Jikumaru Y, Ninami M, Nishimura N, Kodera Y, Inada Y, Shirai T, Hirose S, Nishimura H (2006) Genetic control of the spontaneous activation of CD4+ Th cells in systemic lupus erythematosus-prone (NZB x NZW) F1 mice. Genes Immun 7(8):647–654

    Article  CAS  PubMed  Google Scholar 

  13. Fujii T, Hou R, Sato-Hayashizaki A, Obata M, Ohtsuji M, Ikeda K, Mitsui K, Kodera Y, Shirai T, Hirose S, Nishimura H (2011) Susceptibility loci for the defective foreign protein-induced tolerance in New Zealand Black mice: implication of epistatic effects of Fcgr2b and Slam family genes. Eur J Immunol 41(8):2333–2340.

    Article  CAS  PubMed  Google Scholar 

  14. Ott J (1999) Complex traits. In: Analysis of human genetic linkage, 3rd Edn. The Johns Hopkins University Press, Baltimore MD, pp 306–329

    Google Scholar 

  15. Lander ES, Botstein D (1989) Mapping Mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics 121:185–199

    CAS  PubMed Central  PubMed  Google Scholar 

  16. Manly KF, Cudmore RH Jr, Meer JM (2001) Map Manager QTX, cross-platform software for genetic mapping. Mamm Genome 12(12):930–932

    Article  CAS  PubMed  Google Scholar 

  17. Lander ES, Kruglyak L (1995) Genetic dissection of complex traits: guidelines for interpreting and reporting linkage results. Nat Genet 11:241–247

    Article  CAS  PubMed  Google Scholar 

  18. Sambrook J, Fritsch EF, Maniatis T (1989) Isolation of high-molecular-weight DNA from mammalian cells. In: Ford N, Nora C, Ferguson M (eds) Molecular cloning: a laboratory manual, vol 1. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, p 914

    Google Scholar 

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Acknowledgements

This work was supported by a Grant in Aid for Scientific Research C from the Ministry of Education, Science, Technology, Sports and Culture, Japan.

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Correspondence to Hioroyuki Nishimura .

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Obata, M., Ohtsuji, M., Iida, Y., Shirai, T., Hirose, S., Nishimura, H. (2014). Genome-Wide Genetic Study in Autoimmune Disease-Prone Mice. In: Shiozawa, S. (eds) Arthritis Research. Methods in Molecular Biology, vol 1142. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-0404-4_13

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  • DOI: https://doi.org/10.1007/978-1-4939-0404-4_13

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  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-0403-7

  • Online ISBN: 978-1-4939-0404-4

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