Volume 53, issue 1, December 2021
98 articles in this issue
-
-
Correction to: Opportunities and limits of combining microbiome and genome data for complex trait prediction
Authors (first, second and last of 4)
- Miguel Pérez-Enciso
- Laura M. Zingaretti
- Gustavo de los Campos
- Content type: Correction
- Open Access
- Published: 20 December 2021
- Article: 97
-
Assessing Bos taurus introgression in the UOA Bos indicus assembly
Authors (first, second and last of 5)
- Maulana M. Naji
- Yuri T. Utsunomiya
- Gábor Mészáros
- Content type: Research Article
- Open Access
- Published: 18 December 2021
- Article: 96
-
Mining massive genomic data of two Swiss Braunvieh cattle populations reveals six novel candidate variants that impair reproductive success
Authors (first, second and last of 4)
- Irene M. Häfliger
- Franz R. Seefried
- Cord Drögemüller
- Content type: Research Article
- Open Access
- Published: 16 December 2021
- Article: 95
-
Identification and validation of a regulatory mutation upstream of the BMP2 gene associated with carcass length in pigs
Authors (first, second and last of 8)
- Jing Li
- Song Peng
- Lusheng Huang
- Content type: Research Article
- Open Access
- Published: 14 December 2021
- Article: 94
-
Multiple trait breeding programs with genotype-by-environment interactions based on reaction norms, with application to genetic improvement of disease resilience
Authors
- Jack C. M. Dekkers
- Content type: Research Article
- Open Access
- Published: 13 December 2021
- Article: 93
-
Runs of homozygosity in the Italian goat breeds: impact of management practices in low-input systems
Authors (first, second and last of 17)
- Matteo Cortellari
- Arianna Bionda
- Paola Crepaldi
- Content type: Research Article
- Open Access
- Published: 11 December 2021
- Article: 92
-
Further host-genomic characterization of total antibody response to PRRSV vaccination and its relationship with reproductive performance in commercial sows: genome-wide haplotype and zygosity analyses
Authors (first, second and last of 8)
- Leticia P. Sanglard
- Yijian Huang
- Nick V. L. Serão
- Content type: Research Article
- Open Access
- Published: 07 December 2021
- Article: 91
-
A comprehensive genome-wide scan detects genomic regions related to local adaptation and climate resilience in Mediterranean domestic sheep
Authors (first, second and last of 8)
- Valentina Tsartsianidou
- Enrique Sánchez-Molano
- Georgios Banos
- Content type: Research Article
- Open Access
- Published: 02 December 2021
- Article: 90
-
Dissecting genetic trends to understand breeding practices in livestock: a maternal pig line example
Authors (first, second and last of 4)
- Rostam Abdollahi-Arpanahi
- Daniela Lourenco
- Ignacy Misztal
- Content type: Research Article
- Open Access
- Published: 27 November 2021
- Article: 89
-
Correction to: Bias, dispersion, and accuracy of genomic predictions for feedlot and carcase traits in Australian Angus steers
Authors (first, second and last of 7)
- Pâmela A. Alexandre
- Yutao Li
- Antonio Reverter
- Content type: Correction
- Open Access
- Published: 15 November 2021
- Article: 88
-
The concentrations of immunoglobulins in bovine colostrum determined by the gold standard method are genetically correlated with their near-infrared prediction
Authors (first, second and last of 6)
- Angela Costa
- Marco Franzoi
- Mauro Penasa
- Content type: Research Article
- Open Access
- Published: 10 November 2021
- Article: 87
-
VarGoats project: a dataset of 1159 whole-genome sequences to dissect Capra hircus global diversity
Authors (first, second and last of 24)
- Laure Denoyelle
- Estelle Talouarn
- The VarGoats Consortium
- Content type: Short communication
- Open Access
- Published: 08 November 2021
- Article: 86
This is part of 1 collection: -
Estimates of recent and historical effective population size in turbot, seabream, seabass and carp selective breeding programmes
Authors (first, second and last of 19)
- MarÃa Saura
- Armando Caballero
- Beatriz Villanueva
- Content type: Short communication
- Open Access
- Published: 06 November 2021
- Article: 85
-
Breed of origin of alleles and genomic predictions for crossbred dairy cows
Authors (first, second and last of 4)
- Jón H. EirÃksson
- Emre Karaman
- Ole F. Christensen
- Content type: Research Article
- Open Access
- Published: 06 November 2021
- Article: 84
-
How have sheep breeds differentiated from each other in Morocco? Genetic structure and geographical distribution patterns
Authors (first, second and last of 5)
- Asmae Kandoussi
- Bouabid Badaoui
- Daniel Petit
- Content type: Research Article
- Open Access
- Published: 04 November 2021
- Article: 83
-
Genome‑wide association study and genomic prediction for growth traits in yellow-plumage chicken using genotyping-by-sequencing
Authors (first, second and last of 15)
- Ruifei Yang
- Zhenqiang Xu
- Xiaoxiang Hu
- Content type: Research Article
- Open Access
- Published: 27 October 2021
- Article: 82
-
Correction to: Predicting the accuracy of genomic predictions
Authors
- Jack C. M. Dekkers
- Hailin Su
- Jian Cheng
- Content type: Correction
- Open Access
- Published: 15 October 2021
- Article: 81
-
Deleterious protein-coding variants in diverse cattle breeds of the world
Authors
- Sankar Subramanian
- Content type: Short communication
- Open Access
- Published: 15 October 2021
- Article: 80
-
Single-step genomic evaluation with metafounders for feed conversion ratio and average daily gain in Danish Landrace and Yorkshire pigs
Authors (first, second and last of 4)
- Chuanke Fu
- Tage Ostersen
- Tao Xiang
- Content type: Research Article
- Open Access
- Published: 07 October 2021
- Article: 79
-
Haplotype genomic prediction of phenotypic values based on chromosome distance and gene boundaries using low-coverage sequencing in Duroc pigs
Authors (first, second and last of 13)
- Cheng Bian
- Dzianis Prakapenka
- Xiaoxiang Hu
- Content type: Research Article
- Open Access
- Published: 07 October 2021
- Article: 78
-
Bias, dispersion, and accuracy of genomic predictions for feedlot and carcase traits in Australian Angus steers
Authors (first, second and last of 7)
- Pâmela A. Alexandre
- Yutao Li
- Antonio Reverter
- Content type: Research Article
- Open Access
- Published: 26 September 2021
- Article: 77
-
Genetic architecture and major genes for backfat thickness in pig lines of diverse genetic backgrounds
Authors (first, second and last of 11)
- Miguel Gozalo-Marcilla
- Jaap Buntjer
- Roger Ros-Freixedes
- Content type: Research Article
- Open Access
- Published: 22 September 2021
- Article: 76
-
Pre-selection against a lethal recessive allele in breeding schemes with optimum-contribution selection or truncation selection
Authors (first, second and last of 6)
- Line Hjortø
- Mark Henryon
- Anders Christian Sørensen
- Content type: Research Article
- Open Access
- Published: 22 September 2021
- Article: 75
-
A near complete genome for goat genetic and genomic research
Authors (first, second and last of 10)
- Ran Li
- Peng Yang
- Yu Jiang
- Content type: Research Article
- Open Access
- Published: 10 September 2021
- Article: 74
-
Genomic evaluation of milk yield in a smallholder crossbred dairy production system in India
Authors (first, second and last of 8)
- Mohammad Al Kalaldeh
- Marimuthu Swaminathan
- John P. Gibson
- Content type: Research Article
- Open Access
- Published: 10 September 2021
- Article: 73
-
A genome-wide scan to identify signatures of selection in two Iranian indigenous chicken ecotypes
Authors (first, second and last of 4)
- Elaheh Rostamzadeh Mahdabi
- Ali Esmailizadeh
- Masood Asadi Fozi
- Content type: Research Article
- Open Access
- Published: 09 September 2021
- Article: 72
-
A simulation study of a honeybee breeding scheme accounting for polyandry, direct and maternal effects on colony performance
Authors
- Tristan Kistler
- Benjamin Basso
- Florence Phocas
- Content type: Research Article
- Open Access
- Published: 08 September 2021
- Article: 71
-
A genome-wide association analysis for body weight at 35 days measured on 137,343 broiler chickens
Authors (first, second and last of 14)
- Christos Dadousis
- Adriana Somavilla
- John M. Hickey
- Content type: Research Article
- Open Access
- Published: 08 September 2021
- Article: 70
-
Broad phenotypic impact of the effects of transgenerational heat stress in dairy cattle: a study of four consecutive generations
Authors
- Joel Ira Weller
- Ephraim Ezra
- Moran Gershoni
- Content type: Research Article
- Open Access
- Published: 06 September 2021
- Article: 69
-
Identification of unique ROH regions with unfavorable effects on production and fertility traits in Canadian Holsteins
Authors (first, second and last of 7)
- Bayode O. Makanjuola
- Christian Maltecca
- Christine F. Baes
- Content type: Research Article
- Open Access
- Published: 30 August 2021
- Article: 68
-
Evidence for and localization of proposed causative variants in cattle and pig genomes
Authors
- Martin Johnsson
- Melissa K. Jungnickel
- Content type: Review
- Open Access
- Published: 30 August 2021
- Article: 67
-
Large-scale transcriptome sequencing in broiler chickens to identify candidate genes for breast muscle weight and intramuscular fat content
Authors (first, second and last of 6)
- Huimin Kang
- Di Zhao
- Hua Li
- Content type: Research Article
- Open Access
- Published: 16 August 2021
- Article: 66
-
Opportunities and limits of combining microbiome and genome data for complex trait prediction
Authors (first, second and last of 4)
- Miguel Pérez-Enciso
- Laura M. Zingaretti
- Gustavo de los Campos
- Content type: Research Article
- Open Access
- Published: 06 August 2021
- Article: 65
-
Simulation studies to optimize genomic selection in honey bees
Authors (first, second and last of 4)
- Richard Bernstein
- Manuel Du
- Kaspar Bienefeld
- Content type: Research Article
- Open Access
- Published: 29 July 2021
- Article: 64
-
Long-range linkage disequilibrium in French beef cattle breeds
Authors (first, second and last of 5)
- Abdelmajid El Hou
- Dominique Rocha
- Romain Philippe
- Content type: Research Article
- Open Access
- Published: 23 July 2021
- Article: 63
-
Sequence-based genome-wide association study of individual milk mid-infrared wavenumbers in mixed-breed dairy cattle
Authors (first, second and last of 12)
- Kathryn M. Tiplady
- Thomas J. Lopdell
- Mathew D. Littlejohn
- Content type: Research Article
- Open Access
- Published: 20 July 2021
- Article: 62
-
Genetic analysis of egg production traits in turkeys (Meleagris gallopavo) using a single-step genomic random regression model
Authors (first, second and last of 7)
- Hakimeh Emamgholi Begli
- Lawrence R. Schaeffer
- Christine F. Baes
- Content type: Research Article
- Open Access
- Published: 20 July 2021
- Article: 61
-
A variance component estimation approach to infer associations between Mendelian polledness and quantitative production and female fertility traits in German Simmental cattle
Authors (first, second and last of 4)
- Carsten Scheper
- Reiner Emmerling
- Sven König
- Content type: Research Article
- Open Access
- Published: 14 July 2021
- Article: 60
-
Selection for environmental variance of litter size in rabbits involves genes in pathways controlling animal resilience
Authors (first, second and last of 5)
- Cristina Casto-Rebollo
- MarÃa José Argente
- Noelia Ibáñez-Escriche
- Content type: Research Article
- Open Access
- Published: 13 July 2021
- Article: 59
-
A conditional multi-trait sequence GWAS discovers pleiotropic candidate genes and variants for sheep wool, skin wrinkle and breech cover traits
Authors (first, second and last of 9)
- Sunduimijid Bolormaa
- Andrew A. Swan
- Iona M. MacLeod
- Content type: Research Article
- Open Access
- Published: 08 July 2021
- Article: 58
-
A major QTL at the LHCGR/FSHR locus for multiple birth in Holstein cattle
Authors (first, second and last of 6)
- Sarah Widmer
- Franz R. Seefried
- Cord Drögemüller
- Content type: Research Article
- Open Access
- Published: 03 July 2021
- Article: 57
-
Integration of a single-step genome-wide association study with a multi-tissue transcriptome analysis provides novel insights into the genetic basis of wool and weight traits in sheep
Authors (first, second and last of 12)
- Bingru Zhao
- Hanpeng Luo
- Kechuan Tian
- Content type: Research Article
- Open Access
- Published: 30 June 2021
- Article: 56
-
Predicting the accuracy of genomic predictions
Authors
- Jack C. M. Dekkers
- Hailin Su
- Jian Cheng
- Content type: Research Article
- Open Access
- Published: 29 June 2021
- Article: 55
-
Genetic variation in recombination rate in the pig
Authors (first, second and last of 8)
- Martin Johnsson
- Andrew Whalen
- John M. Hickey
- Content type: Research Article
- Open Access
- Published: 25 June 2021
- Article: 54
-
New residual feed intake criterion for longitudinal data
Authors
- Ingrid David
- Van-Hung Huynh Tran
- Hélène Gilbert
- Content type: Research Article
- Open Access
- Published: 25 June 2021
- Article: 53
-
Caprine PRNP polymorphisms N146S and Q222K are associated with proteolytic cleavage of PrPC
Authors (first, second and last of 5)
- Sally A. Madsen-Bouterse
- Paula Stewart
- Wilfred Goldmann
- Content type: Short communication
- Open Access
- Published: 19 June 2021
- Article: 52
-
Genotype-by-environment interactions for reproduction, body composition, and growth traits in maternal-line pigs based on single-step genomic reaction norms
Authors (first, second and last of 9)
- Shi-Yi Chen
- Pedro H. F. Freitas
- Luiz F. Brito
- Content type: Research Article
- Open Access
- Published: 17 June 2021
- Article: 51
-
Trends in genetic diversity and the effect of inbreeding in American Angus cattle under genomic selection
Authors (first, second and last of 6)
- Emmanuel A. Lozada-Soto
- Christian Maltecca
- Francesco Tiezzi
- Content type: Research Article
- Open Access
- Published: 16 June 2021
- Article: 50
-
Identification of genomic regions affecting production traits in pigs divergently selected for feed efficiency
Authors (first, second and last of 7)
- Emilie Delpuech
- Amir Aliakbari
- Juliette Riquet
- Content type: Research Article
- Open Access
- Published: 14 June 2021
- Article: 49