Single Nucleotide Polymorphism (SNP) Detection and Genotype Calling from Massively Parallel Sequencing (MPS) Data Yun LiWei ChenYi-Hui Zhou OriginalPaper 29 June 2012 Pages: 3 - 25
On Estimation of Allele Frequencies via Next-Generation DNA Resequencing with Barcoding Joon Sang LeeHongyu Zhao OriginalPaper 28 March 2013 Pages: 26 - 53
Statistical Challenges in Sequence-Based Association Studies with Population- and Family-Based Designs Iuliana Ionita-LazaMichael H. ChoNan M. Laird OriginalPaper 10 May 2012 Pages: 54 - 70
PM-Seq: Using Finite Poisson Mixture Models for RNA-Seq Data Analysis and Transcript Expression Level Quantification Han WuZhaohui QinYu Zhu OriginalPaper 21 June 2012 Pages: 71 - 87
Bias Correction in RNA-Seq Short-Read Counts Using Penalized Regression David DalpiazXuming HePing Ma OriginalPaper 22 February 2012 Pages: 88 - 99
Simultaneous Isoform Discovery and Quantification from RNA-Seq David HillerWing Hung Wong OriginalPaper 14 June 2012 Pages: 100 - 118
A Hierarchical Bayesian Model for Estimating and Inferring Differential Isoform Expression for Multi-sample RNA-Seq Data Saran VardhanabhutiMingyao LiHongzhe Li OriginalPaper 20 December 2011 Pages: 119 - 137
Statistical and Computational Methods for High-Throughput Sequencing Data Analysis of Alternative Splicing Liang Chen OriginalPaper 19 May 2012 Pages: 138 - 155
Global Mapping of Transcription Factor Binding Sites by Sequencing Chromatin Surrogates: a Perspective on Experimental Design, Data Analysis, and Open Problems Yingying WeiGeorge WuHongkai Ji OriginalPaper Open access 23 May 2012 Pages: 156 - 178
Screening for SNPs with Allele-Specific Methylation Based on Next-Generation Sequencing Data Bo HuYuan JiAngela H. Ting OriginalPaper 03 April 2013 Pages: 179 - 197
