1. Solving the Bottleneck Problem in Bioinformatics Computing: An Architectural Perspective

   • Feng Lin
   • Heiko Schröder
   • Bertil Schmidt

   EditorialNotes 21 June 2007 Pages: 185 - 188

2. A General Reconfigurable Architecture for the BLAST Algorithm

   • Euripides Sotiriades
   • Apostolos Dollas

   OriginalPaper 28 June 2007 Pages: 189 - 208

3. Performance Analysis of General-Purpose Computation on Commodity Graphics Hardware: A Case Study Using Bioinformatics

   • Weiguo Liu
   • Bertil Schmidt
   • Wolfgang Müller-Wittig

   OriginalPaper 28 June 2007 Pages: 209 - 221

4. MPI-HMMER-Boost: Distributed FPGA Acceleration

   • John Paul Walters
   • Xiandong Meng
   • Joseph Landman

   OriginalPaper 03 August 2007 Pages: 223 - 238

5. A Hopfield Neural Classifier and Its FPGA Implementation for Identification of Symmetrically Structured DNA Motifs

   • Maria Stepanova
   • Feng Lin
   • Valerie C.-L. Lin

   OriginalPaper 10 July 2007 Pages: 239 - 254

6. A Reconfigurable Index FLASH Memory tailored to Seed-Based Genomic Sequence Comparison Algorithms

   • D. Lavenier
   • G. Georges
   • X. Liu

   OriginalPaper 28 June 2007 Pages: 255 - 269

7. Exploring New Search Algorithms and Hardware for Phylogenetics: RAxML Meets the IBM Cell

   • A. Stamatakis
   • F. Blagojevic
   • C. D. Antonopoulos

   OriginalPaper 09 August 2007 Pages: 271 - 286

8. Mesoscopic-level Simulation of Dynamics and Interactions of Biological Molecules Using Monte Carlo Simulation

   • Yoshiki Yamaguchi
   • Tsutomu Maruyama
   • Akihiko Konagaya

   OriginalPaper 03 August 2007 Pages: 287 - 299

9. Grid-Enabled BLASTZ: Application to Comparative Genomics

   • Chunxi Chen
   • Jagath C. Rajapakse

   OriginalPaper 28 June 2007 Pages: 301 - 309

10. Grid-Based Storage Architecture for Accelerating Bioinformatics Computing

    • Frank Zhigang Wang
    • Na Helian
    • Chris Thompson

    OriginalPaper 28 June 2007 Pages: 311 - 324