Skip to main content
Log in

Effect of intra-layer connection on the synchronization of a multi-layer cell network

  • Regular Article
  • Published:
The European Physical Journal Special Topics Aims and scope Submit manuscript

Abstract

Investigating biological systems from the viewpoint of complex systems has attracted noticeable attention during the last decades. In this paper biochemical cell cycle is investigated. Cell cycle process is controlled by the complex network of different interacting proteins. However, the study of a cell cycle in a network has been less considered. This research is focused on the embryonic cell cycle model and investigates the effect of adding an extra duplicate layer to a single-layer network when the connections are sparse and when they are dense. We have found that the synchronization time in a two-layer network in comparison with a single-layer network highly depends on the topology of the single layer and it is very different in sparse and dense cases. In other words, adding an extra layer to a single-layer sparse network helps the synchronization to occur whereas the effect of adding an =1.8pt plus 1pt minus 1ptextra layer to a fully connected network interrupts the synchronization.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  1. A. Goldbeter, Nature 420, 238 (2002)

    Article  ADS  Google Scholar 

  2. A. Goldbeter, Biochemical oscillations and cellular rhythms: The molecular bases of periodic and chaotic behaviour (Cambridge University Press, 1997)

  3. W. Sha, J. Moore, K. Chen, A.D. Lassaletta, C.-S. Yi, J.J. Tyson, J.C. Sible, Proc. Natl. Acad. Sci. 100, 975 (2003)

    Article  ADS  Google Scholar 

  4. B. Novak, J.J. Tyson, J. Theor. Biol. 165, 101 (1993)

    Article  Google Scholar 

  5. T.Y.-C. Tsai, Y.S. Choi, W. Ma, J.R. Pomerening, C. Tang, J.E. Ferrell, Science 321, 126 (2008)

    Article  ADS  Google Scholar 

  6. J.R. Pomerening, S.Y. Kim, J.E. Ferrell, Cell 122, 565 (2005)

    Article  Google Scholar 

  7. Q. Yang, J.E. Ferrell Jr, Nat. Cell Biol. 15, 519 (2013)

    Article  Google Scholar 

  8. W. He, G. Chen, Q.-L. Han, W. Du, J. Cao, F. Qian, IEEE Trans. Syst. Man Cybern.: Syst. 47, 1655 (2017)

    Article  Google Scholar 

  9. V. Berec, Eur. Phys. J. Special Topics 226, 2205 (2017)

    Article  ADS  Google Scholar 

  10. S. Boccaletti, V. Latora, Y. Moreno, M. Chavez, D.-U. Hwang, Phys. Rep. 424, 175 (2006)

    Article  ADS  MathSciNet  Google Scholar 

  11. M. Gosak, R. Markovic̆, J. Dolenšek, M.S. Rupnik, M. Marhl, A. Stožer, M. Perc, Phys. Life Rev. 24, 118 (2018)

    Article  ADS  Google Scholar 

  12. M. De Domenico, Phys. Life Rev. 24, 149 (2018)

    Article  ADS  Google Scholar 

  13. Z. Rostami, K. Rajagopal, A.J.M. Khalaf, S. Jafari, M. Perc, M. Slavinec, Physica A 509, 1162 (2018)

    Article  ADS  Google Scholar 

  14. S. Panahi, T. Shirzadian, M. Jalili, S. Jafari, Appl. Math. Comput. 346, 395 (2019)

    MathSciNet  Google Scholar 

  15. A. Stožer, M. Gosak, J. Dolenšek, M. Perc, M. Marhl, M.S. Rupnik, D. Korošak, PLoS Comput. Biol. 9, e1002923 (2013)

    Article  ADS  Google Scholar 

  16. P.C. Romond, M. Rustici, D. Gonze, A. Goldbeter, Ann. New York Acad. Sci. 879, 180 (1999)

    Article  ADS  Google Scholar 

  17. C. Gérard, A. Goldbeter, PLoS Comput. Biol. 8, e1002516 (2012)

    Article  ADS  Google Scholar 

  18. C. Gérard, A. Goldbeter, Proc. Natl. Acad. Sci. 106, 21643 (2009)

    Article  ADS  Google Scholar 

  19. N. Tapon, K.H. Moberg, I.K. Hariharan, Curr. Opin. Cell Biol. 13, 731 (2001)

    Article  Google Scholar 

  20. C. Gérard, A. Goldbeter, Interface Focus 1, 24 (2010)

    Article  Google Scholar 

  21. N. Barkai, S. Leibler, Nature 387, 913 (1997)

    Article  ADS  Google Scholar 

  22. I.M. Tolić-Nørrelykke, E.-L. Munteanu, G. Thon, L. Oddershede, K. Berg-Sørensen, Phys. Rev. Lett. 93, 078102 (2004)

    Article  ADS  Google Scholar 

  23. S. Boccaletti, G. Bianconi, R. Criado, C.I. Del Genio, J. Gómez-Gardenes, M. Romance, I. Sendina-Nadal, Z. Wang, M. Zanin, Phys. Rep. 544, 1 (2014)

    Article  ADS  MathSciNet  Google Scholar 

  24. M. Kivelä, A. Arenas, M. Barthelemy, J.P. Gleeson, Y. Moreno, M.A. Porter, J. Complex Netw. 2, 203 (2014)

    Article  Google Scholar 

  25. Z. Wang, L. Wang, A. Szolnoki, M. Perc, Eur. Phys. J. B 88, 124 (2015)

    Article  ADS  Google Scholar 

  26. M. De Domenico, C. Granell, M.A. Porter, A. Arenas, Nat. Phys. 12, 901 (2016)

    Article  Google Scholar 

  27. S. Rakshit, B.K. Bera, D. Ghosh, Phys. Rev. E 98, 032305 (2018)

    Article  ADS  MathSciNet  Google Scholar 

  28. S. Rakshit, S. Majhi, B.K. Bera, S. Sinha, D. Ghosh, Phys. Rev. E 96, 062308 (2017)

    Article  ADS  Google Scholar 

  29. I. Leyva, R. Sevilla-Escoboza, I. Sendiña-Nadal, R. Gutiérrez, J. Buldú, S. Boccaletti, Sci. Rep. 7, 45475 (2017)

    Article  ADS  Google Scholar 

  30. C.I. del Genio, J. Gómez-Gardeñes, I. Bonamassa, S. Boccaletti, Sci. Adv. 2, e1601679 (2016)

    Article  ADS  Google Scholar 

  31. S. Rakshit, B.K. Bera, D. Ghosh, S. Sinha, Phys. Rev. E 97, 052304 (2018)

    Article  ADS  Google Scholar 

  32. X. Sun, J. Lei, M. Perc, J. Kurths, G. Chen, Chaos: Interdiscip. J. Nonlinear Sci. 21, 016110 (2011)

    Article  Google Scholar 

  33. J. Ma, F. Li, L. Huang, W.-Y. Jin, Commun. Nonlinear Sci. Numer. Simul. 16, 3770 (2011)

    Article  ADS  Google Scholar 

  34. D. Dudkowski, P. Kuzma, T. Kapitaniak, Discret. Dyn. Nat. Soc. 2014, 650473 (2014)

    Article  Google Scholar 

  35. S. Majhi, B.K. Bera, S. Banerjee, D. Ghosh, Eur. Phys. J. Special Topics 225, 65 (2016)

    Article  ADS  Google Scholar 

  36. S.K. Bhowmick, B.K. Bera, D. Ghosh, Commun. Nonlinear Sci. Numer. Simul. 22, 692 (2015)

    Article  ADS  MathSciNet  Google Scholar 

  37. S. Rakshit, A. Ray, B.K. Bera, D. Ghosh, Nonlinear Dyn. 94, 785 (2018)

    Article  Google Scholar 

  38. B.K. Bera, D. Ghosh, P. Parmananda, G. Osipov, S.K. Dana, Chaos: Interdiscip. J. Nonlinear Sci. 27, 073108 (2017)

    Article  Google Scholar 

  39. S. Rakshit, B.K. Bera, M. Perc, D. Ghosh, Sci. Rep. 7, 2412 (2017)

    Article  ADS  Google Scholar 

  40. V. Berec, Chaos Solitons Fractals 86, 75 (2016)

    Article  ADS  MathSciNet  Google Scholar 

  41. S. Kundu, S. Majhi, B.K. Bera, D. Ghosh, M. Lakshmanan, Phys. Rev. E 97, 022201 (2018)

    Article  ADS  MathSciNet  Google Scholar 

  42. B.K. Bera, S. Majhi, D. Ghosh, M. Perc, Eur. Phys. Lett. 118, 10001 (2017)

    Article  ADS  Google Scholar 

  43. B.K. Bera, D. Ghosh, M. Lakshmanan, Phys. Rev. E 93, 012205 (2016)

    Article  ADS  MathSciNet  Google Scholar 

  44. D. Dudkowski, Y. Maistrenko, T. Kapitaniak, Phys. Rev. E 90, 032920 (2014)

    Article  ADS  Google Scholar 

  45. D. Dudkowski, Y. Maistrenko, T. Kapitaniak, Chaos: Interdiscip. J. Nonlinear Sci. 26, 116306 (2016)

    Article  Google Scholar 

  46. J. Ma, B. Hu, C. Wang, W. Jin, Nonlinear Dyn. 73, 73 (2013)

    Article  Google Scholar 

  47. J. Ma, C.-N. Wang, W.-Y. Jin, Y. Wu, Appl. Math. Comput. 217, 3844 (2010)

    MathSciNet  Google Scholar 

  48. X. Xu, J. Phys. A: Math. Theor. 41, 035102 (2008)

    Article  ADS  Google Scholar 

  49. J. Tang, J. Zhang, J. Ma, G. Zhang, X. Yang, Sci. China Technol. Sci. 60, 1011 (2017)

    Article  Google Scholar 

  50. F. Xu, J. Zhang, M. Jin, S. Huang, T. Fang, Nonlinear Dyn. 94, 775 (2018)

    Article  Google Scholar 

  51. L. Tang, X. Wu, J. Lü, J.-A. Lu, R.M. D’Souza, Phys. Rev. E 99, 012304 (2019)

    Article  ADS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Sajad Jafari.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Shaverdi, Y., Panahi, S., Kapitaniak, T. et al. Effect of intra-layer connection on the synchronization of a multi-layer cell network. Eur. Phys. J. Spec. Top. 228, 2405–2417 (2019). https://doi.org/10.1140/epjst/e2019-900051-9

Download citation

  • Received:

  • Revised:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1140/epjst/e2019-900051-9

Navigation