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Analysis of genetic structure and differentiation of the bog and dry land populations of Pinus sibirica Du Tour based on nuclear microsatellite loci

  • Plant Genetics
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Abstract

We evaluated the population structure of the bog and dry land populations of the Siberian pine Pinus sibirica (P. sibrica) in Western Siberia using nuclear genome markers. Six pairs of nuclear microsatellite loci were used for this analysis. We detected 30 allelic variants in 120 individuals of four populations of P. sibirica. We established that the studied populations differ by genetic structure. The most essential differences were identified between the Siberian pine population from oligotrophic bog and the group of populations from dry land within eutrophic bogs and near settlements P. sibirica forest (F ST = 0.019; D N = 0.053). We estimated that diversification of the West Siberian populations of P. sibirica exceeded 2.4% (F ST = 0.024), based on an analysis of SSR markers.

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References

  1. Efremov, S.P., Efremova, T.T., and Bloiten, V., Biological productivity and the carbon pool of forest swamps in West Siberia, Sib. Ekol. Zh., 2005, no. 1, pp. 29–44.

    Google Scholar 

  2. Nekrasova, T.P., Biologicheskie osnovy semenosheniya kedra sibirskogo (Biological Basis of Seed Formation in Siberian Pine), Novosibirsk: Nauka, 1972.

    Google Scholar 

  3. Vorob’ev, V.N., Vorob’eva, N.A., and Goroshkevich, S.N., Rost i pol kedra sibirskogo (Growth and Sex of Siberian Pine), Novosibirsk: Nauka, 1989.

    Google Scholar 

  4. Dyukarev, A.G., Pologova, N.N., Krivets, S.A., and Bisirova, E.M., Near settlement Siberian pine forests as an object of protection and reconstruction, Vestn. Tomsk Gos. Univ., Biol., 2009, no. 2(6), pp. 75–83.

    Google Scholar 

  5. Goroshkevich, S.N., Seed crop structure in taiga and near settlement Siberian pine forests: level, character and nature of the differences, Lesn. Khoz., 2010, no. 2, pp. 30–31.

    Google Scholar 

  6. Avrov, F.D., Genetic exchange between Siberian pine plantations under different environmental conditions, in Problemy kedra (Problems of Siberian Pine), issue 5: Ekologiya kedrovykh lesov (Ecology of Siberian Pine Forests), Vorob’ev, V.N., Ed., Tomsk: IEPK SO RAN, 1992, pp. 61–68.

    Google Scholar 

  7. Gorozhankina, S.M. and Konstantinov, V.D., Geografiya taigi Zapadnoi Sibiri (Geography of Taiga in West Siberia), Novosibirsk: Nauka, 1978.

    Google Scholar 

  8. Sedykh, V.N., Formirovanie kedrovykh lesov Priob’ya (Formation of Siberian Pine Forests in Priobye), Novosibirsk: Nauka, 1979.

    Google Scholar 

  9. Velisevich, S.N., Petrova, E.A., Bender, O.G., and Zotikova, A.P., Formation of the Siberian pine (Pinus sibirica Du Tour) population structure in wetland ecotopes of the south of Tomsk oblast, Vestn. Tomsk Gos. Univ., Biol., 2008, no. 1, pp. 13–22.

    Google Scholar 

  10. Efremov, S.P., Influence of fen drainage on the growth of Siberian pine, Lesovedenie, 1967, no. 5, pp. 20–27.

    Google Scholar 

  11. Sedel’nikova, T.S., Pimenov, A.V., and Muratova, E.N., Specific characteristics of generative sphere and karyotype of the Siberian pine bog population, in Problemy kedra (Problems of Siberian Pine), issue 5: Ekologiya, sovremennoe sostoyanie, ispol’zovanie i vosstanovlenie kedrovykh lesov Sibiri (Ecology, State-of-the Art, and Restoration of Siberian Pine Forests in Siberia), Vorob’ev, V.N., Ed., Tomsk: Inst. Opt. Atmos. Sib. Otd. Ross. Akad. Nauk, 2003, pp. 169–173.

    Google Scholar 

  12. Sedel’nikova, T.S. and Muratova, E.N., Specific karyological features of Siberian stone pine (Pinus sibirica Du Tour) in Western Siberian bogs, Russ. J. Ecol., 2002, no. 5, pp. 303–308.

    Google Scholar 

  13. Gorodkov, B.N., Observations on the life of Siberian pine in Western Siberia, Tr. Botan. Muz. Akad. Nauk, 1916, no. 16, pp. 153–172.

    Google Scholar 

  14. Khramov, A.A. and Valutskii, V.I., Unusual form of Pinus sibirica (Rupr.) Mayr on the bog, Bot. Zh., 1970, vol. 55, no. 2, pp. 280–284.

    Google Scholar 

  15. Velisevich, S.N., Bender, O.G., and Zotikova, A.P., Seed production of Pinus sibirica (Pinaceae) in West Siberian bog and upland forest ecotope, Rastit. Resur., 2011, vol. 47, no. 2, pp. 1–14.

    Google Scholar 

  16. Krutovskii, K.V., Politov, D.V., Altukhov, Yu.P., et al., Genetic variability in Siberian pine: 4. Genetic diversity and differentiation between populations, Genetika (Moscow), 1989, vol. 25, no. 11, pp. 2009–2032.

    Google Scholar 

  17. Politov, D.V., Krutovskii, K.V., and Altukhov, Yu.P., Isozyme loci characteristics of gene banks of populations of cedar pines, Genetika (Moscow), 1992, vol. 28, no. 1, pp. 93–114.

    CAS  Google Scholar 

  18. Petrova, E.A., Velisevich, S.N., Politov, D.V., et al., Distribution of allozyme variation in Siberian Stone pine: three levels of diversity, Khvoinye Boreal. Zony, 2010, vol. 27, nos. 1–2, pp. 160–168.

    Google Scholar 

  19. Devey, M.E., Bell, J.C., Smith, D.N., et al., A genetic linkage map for Pinus radiata based on RFLP, RAPD, and microsatellite markers, Theor. Appl. Genet., 1996, vol. 92, no. 6, pp. 673–679.

    Article  PubMed  CAS  Google Scholar 

  20. Salzer, K., Sebastiani, F., Gugerli, F., et al., Isolation and characterization of polymorphic nuclear microsatellite loci in Pinus cembra L., Mol. Ecol. Resour., 2009, vol. 9, pp. 858–861.

    Article  PubMed  CAS  Google Scholar 

  21. Van Oosterhout, C., Hutchinson, W.F., Wills, D.P.M., and Shipley, P., MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite date, Mol. Ecol. Notes, 2004, no. 4, pp. 353–538.

    Google Scholar 

  22. Peakall, R. and Smouse, P.E., GenAlEx v6: genetic analysis in Excel. Population genetic software for teaching and research, Mol. Ecol. Notes, 2006, vol. 6, no. 1, pp. 288–295.

    Article  Google Scholar 

  23. Mantel, N., The detection of disease clustering and a generalized regression approach, Cancer Res., 1967, no. 27, pp. 209–220.

    Google Scholar 

  24. Chakraborty, R., De Andrade, M., Daiger, S.P., and Budowle, B., Apparent heterozygote deficiencies observed in DNA typing data and their implications in forensic applications, Ann. Hum. Genet., 1992, vol. 56, pp. 45–57.

    Article  PubMed  CAS  Google Scholar 

  25. Mudrik, E.A., Belokon’, M.M., Belokon’, Yu.S., et al., Genetic variation of cedar pines in Europe and Siberia according to microsatellite analysis, in Aktual’nye problemy prikladnoi genetiki, selektsii i biotekhnologii rastenii: Mater. mezhdunar. konf. (Current Problems of Applied Genetics, Breeding and Plant Biotechnology: Proc. Int. Conf.), Yalta: Nikitskii Botanicheskii Sad, 2009, p. 47.

    Google Scholar 

  26. Mudrik, E.A., Belokon’, M.M., Belokon’, Yu.S., et al., Genetic variation and cross-pollination rate in Pinus cembra L. in the Ukrainian Carpathians and the Austrian Alps at allozyme and microsatellite loci, Vestn. Mos. Gos. Univ. Lesa-Lesnoi Vestn., 2012, vol. 84, no. 1, pp. 112–117.

    Google Scholar 

  27. Sannikov, S.N. and Petrova, I.V., Differentsiatsiya populyatsii sosny obyknovennoi (Differentiation among Populations of Scots Pine), Yekaterinburg: Ural Otd. Ross. Akad. Nauk, 2003.

    Google Scholar 

  28. Sedel’nikova, T.S., Pimenov, A.V., and Efremov, S.P., Morphology of Scots pine pollen in the swamps and dry meadows, Lesovedenie, 2004, no. 6, pp. 1–5.

    Google Scholar 

  29. Mamaev, S.A. and Rozhdestvenskii, Yu.F., Scots pine microsporogenesis in wetland stands, Polovaya reproduktsiya khvoinykh: Mater. I Vses. simp. (Sexual Reproduction of Conifers: Proc. 1st All-Union Symp.), Novosibirsk: Nauka, 1973, pp. 103–105.

    Google Scholar 

  30. Novikov, P.S. and Sheikina, O.V., ISSR-analysis of Scots pine (Pinus sylvestris) trees appurtenant to different selection categories, Nauch. Zh. Kuban’ Gos. Agrar. Univ., 2012, no. 82(08). IDA: 0821208065

    Google Scholar 

  31. Korshikov, I.I., Demkovich, A.E., Makogon, I.V., et al., Variation of Scots pine elite trees at isozyme and microsatellite loci, in Faktori eksperimental’noi evolyutsii organizmiv (Factors of Experimental Evolution of Organisms), Kiev: Logos, 2013, vol. 13, pp. 202–206.

    Google Scholar 

  32. Guries, R.P. and Ledig, F.T., Gene diversity and population structure in pitch pine (Pinus ridiga Mill.), Evolution, 1982, vol. 36, pp. 387–402.

    Article  Google Scholar 

  33. Nei, M., Genetic distance between populations, Am. Nat., 1972, vol. 106, pp. 283–291.

    Article  Google Scholar 

  34. Semerikov, L.F., Semerikov, V.L., Podogas, A.V., et al., On the structure of ecological and genetic variation of Scots pine (Pinus sylvestris L.), Ekologiya, 1993, no. 6, pp. 34–40.

    Google Scholar 

  35. Belokon’, Yu.S., Politov, D.V., Belokon’, M.M., and Krutovskii, K.V., Genetic differentiation of swamp and upland populations of Scots pine (Pinus silvestris L.), in Zhizn’ populyatsii v geterogennoi srede (Life of Populations in a Heterogeneous Environment), Ioshkar-Ola: Periodika Marii El, 1998, part 2, pp. 23–24.

    Google Scholar 

  36. Dvornik, V.Ya., Kotov, V.S., and Mikheenko, I.P., Genetic differentiation of adjacent populations of Scots pine Pinus sylvestris L. from different ecotopes, Russ. J. Genet., 1998, vol. 34, no. 9, pp. 1060–1064.

    CAS  Google Scholar 

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Correspondence to N. V. Oreshkova.

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Original Russian Text © N.V. Oreshkova, T.S. Sedel’nikova, A.V. Pimenov, S.P. Efremov, 2014, published in Genetika, 2014, Vol. 50, No. 9, pp. 1059–1066.

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Oreshkova, N.V., Sedel’nikova, T.S., Pimenov, A.V. et al. Analysis of genetic structure and differentiation of the bog and dry land populations of Pinus sibirica Du Tour based on nuclear microsatellite loci. Russ J Genet 50, 934–941 (2014). https://doi.org/10.1134/S1022795414090105

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  • DOI: https://doi.org/10.1134/S1022795414090105

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