Skip to main content
Log in

Identification of phosphorylation sites in aminoglycoside phosphotransferase VIII from Streptomyces rimosus

  • Published:
Biochemistry (Moscow) Aims and scope Submit manuscript

Abstract

We demonstrate for the first time the role of phosphorylation in the regulation of activities of enzymes responsible for inactivation of aminoglycoside antibiotics. The aminoglycoside phosphotransferase VIII (APHVIII) from the actinobacterial strain Streptomyces rimosus ATCC 10970 is an enzyme regulated by protein kinases. Two serine residues in APHVIII are shown to be phosphorylated by protein kinases from extracts of the kanamycin-resistant strain S. rimosus 683 (a derivative of strain ATCC 10970). Using site-directed mutagenesis and molecular modeling, we have identified the Ser146 residue in the activation loop of the enzyme as the key site for Ca2+-dependent phosphorylation of APHVIII. Comparison of the kanamycin kinase activities of the unphosphorylated and phosphorylated forms of the initial and mutant APHVIII shows that the Ser146 modification leads to a 6–7-fold increase in the kanamycin kinase activity of APHVIII. Thus, Ser146 in the activation loop of APHVIII is crucial for the enzyme activity. The resistance of bacterial cells to kanamycin increases proportionally. From the practical viewpoint, our results increase prospects for creation of highly effective test systems for selecting inhibitors of human and bacterial serine/threonine protein kinases based on APHVIII constructs and corresponding human and bacterial serine/threonine protein kinases.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

Abbreviations

APHVIII:

aminoglycoside phosphotransferase VIII

DTT:

dithiothreitol

EGTA:

sodium ethylene glycol tetraacetate

MD:

molecular dynamics

PKA:

protein kinase A

PKC:

protein kinase C

STPKs:

serine/threonine protein kinases

References

  1. Kannan, N., Taylor, S. S., Zhai, Y., Venter, J. C., and Manning, G. (2007) PLoS Biol., 5, 0466–0478.

    Article  Google Scholar 

  2. Davies, J., and Wright, G. D. (1997) Trends Microbiol., 5, 234–240.

    Article  PubMed  CAS  Google Scholar 

  3. Wright, G. D. (2007) Nat. Rev. Microbiol., 5, 175–186.

    Article  PubMed  CAS  Google Scholar 

  4. Sizova, I. A., Lapina, T. V., Frolova, O. N., Alexandrova, N. N., Akopiants, K. E., and Danilenko, V. N. (1996) Gene, 181, 13–18.

    Article  PubMed  CAS  Google Scholar 

  5. Sizova, I. A., Hegemann, P., Furman, M., and Danilenko, V. N. (2002) Mol. Biol. (Moscow), 36, 18–25.

  6. Danilenko, V. N., and Akopiants, K. E. (1995) in Proc. 9th Int. Symp. on Biology of Actinomycetes, Moscow, pp. 104–112.

  7. Daigle, D. M., McKay, G. A., Thompson, P. R., and Wright, G. D. (1999) Chem. Biol., 6, 11–18.

    Article  PubMed  CAS  Google Scholar 

  8. Shakya, T., Stogios, P. J., Waglechner, N., Evdokimova, E., Ejim, L., Blanchard, J. E., McArthur, A. G., Savchenko, A., and Wright, G. D. (2011) Chem. Biol., 18, 1591–1601.

    Article  PubMed  CAS  Google Scholar 

  9. Fong, D. H., Xiong, B., Hwang, J., and Berghuis, A. M. (2011) PLoS One, 6, e19589.

    Article  PubMed  CAS  Google Scholar 

  10. Scheeff, E. D., and Bourne, P. E. (2005) PLoS Comput. Biol., 1, 0359–0381.

    Article  CAS  Google Scholar 

  11. Kennely, P. (2002) FEMS Microbiol. Lett., 206, 1–8.

    Article  Google Scholar 

  12. Narayan, A., Sachdeva, P., Sharma, K., Saini, A., Tyagi, A., and Singh, Y. (2007) Physiol. Genomics, 29, 66–75.

    PubMed  CAS  Google Scholar 

  13. Pereira, S. F., Goss, L., and Dworkin, J. (2011) Microbiol. Mol. Biol. Rev., 75, 192–212.

    Article  PubMed  CAS  Google Scholar 

  14. Bekker, O., Elizarov, S. M., Alekseeva, M. G., Lyubimova, I., and Danilenko, V. (2008) Mikrobiologiya, 77, 630–638.

    CAS  Google Scholar 

  15. Elizarov, S. M., Sergienko, O. V., Sizova, I. A., and Danilenko, V. N. (2005) Mol. Biol. (Moscow), 39, 255–263.

  16. Inoue, H., Nojima, H., and Okayama, H. (1990) Gene, 96, 23–28.

    Article  PubMed  CAS  Google Scholar 

  17. Mierendorf, R., Yeager, K., and Novy, R. (1994) Newslett. Novagen Inc., 1, 1–3.

    Google Scholar 

  18. Arnold, K., Bordoli, L., Kopp, J., and Schwede, T. (2006) Bioinformatics, 22, 195–201.

    Article  PubMed  CAS  Google Scholar 

  19. Berendsen, H. J. C., van der Spoel, D., and van Drunen, R. (1995) Comp. Phys. Commun., 91, 43–56.

    Article  CAS  Google Scholar 

  20. Lindahl, E., Hess, B., and van der Spoel, D. (2001) J. Mol. Model., 7, 306–317.

    CAS  Google Scholar 

  21. Nelson, R. M., and Long, G. L. (1989) Anal. Biochem., 180, 147–151.

    Article  PubMed  CAS  Google Scholar 

  22. Elizarov, S. M., Mironov, V. A., and Danilenko, V. N. (2000) Life, 50, 139–143.

    PubMed  CAS  Google Scholar 

  23. Hutchcroft, J. E., Anostario, M., Harrison, M. L., and Geahlen, R. L. (1991) Methods Enzymol., 200, 417–422.

    Article  PubMed  CAS  Google Scholar 

  24. Kameshita, I., and Fujisawa, H. (1989) Anal. Biochem., 183, 139–143.

    Article  PubMed  CAS  Google Scholar 

  25. Elizarov, S. M., and Danilenko, V. N. (2001) FEMS Microbiol. Lett., 202, 135–138.

    Article  PubMed  CAS  Google Scholar 

  26. Azucena, E., and Mobashery, S. (2001) Drug. Resist. Updat., 4, 106–117.

    Article  PubMed  CAS  Google Scholar 

  27. Nurizzo, D., Shewry, S. C., Perlin, M. H., Brown, S. A., Dholakia, J. N., Fuchs, R. L., Deva, T., Baker, E. N., and Smith, C. A. (2003) J. Mol. Biol., 327, 491–506.

    Article  PubMed  CAS  Google Scholar 

  28. Taylor, S. S., Yang, J., Wu, J., et al. (2004) Biochim. Biophys. Acta, 1697, 259–269.

    Article  PubMed  CAS  Google Scholar 

  29. Prisic, S., Dankwa, S., Schwartz, D., Chou, M. F., Locasale, J. W., Kang, C. M., Bemis, G., Church, G. M., Steen, H., and Husson, R. N. (2010) Proc. Natl. Acad. Sci. USA, 107, 7521–7526.

    Article  PubMed  CAS  Google Scholar 

  30. Danilenko, V. N., Osolodkin, D. I., Lakatosh, S. A., Preobrazhenskaya, M. N., and Shtil, A. A. (2011) Curr. Topics Med. Chem., 11, 1352–1369.

    Article  CAS  Google Scholar 

  31. Danilenko, V., Simonov, A., Lakatosh, S., Kubbutat, M., Totzke, F., Schaechtele, C., Elizarov, S., Bekker, O., and Printsevskaya, S. (2008) J. Med. Chem., 51, 7731–7736.

    Article  PubMed  CAS  Google Scholar 

  32. D’Costa, V. M., McGrann, K. M., Hughes, D. W., and Wright, G. D. (2006) Science, 311, 374–377.

    Article  PubMed  Google Scholar 

  33. D’Costa, V. M., Griffiths, E., and Wright, G. D. (2007) Curr. Opin. Microbiol., 10, 481–489.

    Article  PubMed  Google Scholar 

  34. Anizon, F., Shtil, A. A., Danilenko, V. N., and Moreau, P. (2010) Curr. Med. Chem., 17, 4114–4133.

    Article  PubMed  CAS  Google Scholar 

  35. Bekker, O. B., Alekseeva, M. G., Osolodkin, D. I., Palyulin, V. A., Elizarov, S. M., Zefirov, N. S., and Danilenko, V. N. (2010) Acta Naturae, 2, 126–139.

    Google Scholar 

  36. Manteca, A., Mader, U., Connolly, B. A., and Sanchez, J. (2006) Proteomics, 6, 6008–6022.

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to V. N. Danilenko.

Additional information

Original Russian Text © S. M. Elizarov, M. G. Alekseeva, F. N. Novikov, G. G. Chilov, D. A. Maslov, A. A. Shtil, V. N. Danilenko, 2012, published in Biokhimiya, 2012, Vol. 77, No. 11, pp. 1504–1512.

Originally published in Biochemistry (Moscow) On-Line Papers in Press, as Manuscript BM12-060, September 30, 2012.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Elizarov, S.M., Alekseeva, M.G., Novikov, F.N. et al. Identification of phosphorylation sites in aminoglycoside phosphotransferase VIII from Streptomyces rimosus . Biochemistry Moscow 77, 1258–1265 (2012). https://doi.org/10.1134/S0006297912110041

Download citation

  • Received:

  • Revised:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1134/S0006297912110041

Key words

Navigation