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Recent changes (2008) in cyanobacteria taxonomy based on a combination of molecular background with phenotype and ecological consequences (genus and species concept)

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Abstract

Taxonomic classification is a method for recognizing and registering the world’s organism diversity, in the context of continual changing knowledge about evolutionary (genetic) and ecological relations and phenotype variation. The present system of cyanobacteria must be modified according to combined markers, in which molecular data (as an indisputable genetic basis) should be correlated with biochemical, ultrastructural, phenotypic and ecological data. New data are necessary in order to correct or up date the system; thus, the classification must continually be revised and supplemented. The greatest problem is to transfer all modern data derived from molecular investigations to experimental research and establish the necessary and correct nomenclatural rules for scientific practice. The molecular approach must be the baseline for the reorganisation of our knowledge; however, it should explain and be in agreement with morphological and ecological variation of cyanobacterial genotypes. The present article summarizes the main conclusions, derived from modern cyanobacterial diversity studies.

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References

  • Anagnostidis, K. & J. Komárek, 1985. Modern approach to the classification system of Cyanophytes 1 – introduction. Algological Studies 38–39: 291–302.

    Google Scholar 

  • Anagnostidis, K. & J. Komárek, 1988. Modern approach to the classification system of cyanophytes 3 – Oscillatoriales. Algological Studies 50–53: 327–472.

    Google Scholar 

  • Barker, G. L. A., P. K. Hayes, S. L. O’Mahony, P. Vacharapiyasophon & A. E. Walsby, 1999. A molecular and phenotypic analysis of Nodularia (Cyanobacteria) from the Baltic Sea. Journal of Phycology 35: 931–937.

    Article  CAS  Google Scholar 

  • Bornet, E. & C. Flahault, 1886–1888. Révision des Nostocacées hétérocystées. Annales des Sciences Naturelles, Serie 7, Botanique 3: 323–381, 4: 343–373, 5: 51–129, 7: 171–262.

  • Bourrelly, P., 1970. Les algues d’eau douce III. N. Boubée and Cie, Paris: 512 pp.

    Google Scholar 

  • Brown, I., D. Mummey & K. E. Cooksey, 2005. A novel cyanobacterium exhibiting an elevated tolerance for iron. FEMS Microbiology Ecology 52: 307–314.

    Article  CAS  PubMed  Google Scholar 

  • Casamatta, D. A., S. R. Gomez & J. R. Johansen, 2006. Rexia erecta gen. et sp. nov. and Capsosira lowei sp. nov., two newly described cyanobacterial taxa from the Great Smoky Mountains National Park (USA). Hydrobiologia 561: 13–26.

    Article  Google Scholar 

  • Castenholz, R. W., 2001. Oxygenic photosynthetic bacteria. In Boone, D. R. & R. W. Castenholz (eds), Bergey’s Manual of Systematic Bacteriology, Vol. 1, 2nd ed. Springer-Verlag, New York: 473–600.

    Google Scholar 

  • Dufresne, A., M. Ostrowski, D. J. Scanlan, L. Garczarek, W. R. Hess & F. Partensky, 2008. The role of lateral gene transfer in niche adaptation of marine Synechococcus. 7th European Workshop on Molecular Biology of Cyanobacteria (Abstracts), p. 96.

  • Elenkin, A. A., 1936, 1938, 1949. Monographia algarum cyanophycearum aguidulcium et terrestrium in finibus USSR inventarum. [Sinezelenye vodorosli SSSR]. 1,2(1-2): 1-1908, Izd. AN SSSR, Moskva-Leningrad.

  • Erdmann, N. & M. Hagemann, 2001. Salt acclimation of algae and cyanobacteria: a comparison. In Rai, L. C. & J. P. Gaur (eds), Algal Adaptation to Environmental Stresses. Springer, Heidelberg: 323–362.

    Google Scholar 

  • Fiore, M. F., C. L. Sant’Anna, M. T. P. Azevedo, J. Komárek, J. Kaštovský, J. Sulek & A. S. Lorenzi, 2007. The cyanobacterial genus Brasilonema – molecular and phenotype evaluation. Journal of Phycology 43: 789–798.

    Article  CAS  Google Scholar 

  • Flechtner, V. R., S. L. Boyer, J. R. Johansen & M. L. DeNoble, 2002. Spirirestis rafaelensis gen. et sp. nov. (Cyanophyceae), a new cyanobacterial genus from arid soils. Nova Hedwigia 74: 1–24.

    Article  Google Scholar 

  • Garcia-Pichel, F., U. Nübel & G. Muyzer, 1998. The phylogeny of unicellular, extremely halotolerant cyanobacteria. Archives of Microbiology 169: 469–482.

    Article  CAS  PubMed  Google Scholar 

  • Geitler, L., 1932. Cyanophyceae. In Rabenhorst’s Kryptogamenflora von Deutschland, Österreich und der Schweiz 14: 1–1196, Akad. Verlagsges, Leipzig.

  • Gomont, M., 1892. Monographie des Ocillatoriées (Nostocacées homocystées). Annales des Sciences Naturelles, Serie 7, Botanique 15: 263–368, 16: 91–264.

  • Gugger, M. & L. Hoffmann, 2004. Polyphyly of true branching cyanobacteria (Stigonematales). International Journal of Systematic and Evolutionary Microbiology 54: 349–357.

    Article  CAS  PubMed  Google Scholar 

  • Gugger, M., C. Lyra, P. Henriksen, A. Couté, J.-F. Humbert & K. Sivonen, 2002. Phylogenetic comparison of the cyanobacterial genera Anabaena and Aphanizomenon. International Journal of Systematic and Evolutionary Microbiology 52: 1–14.

    Google Scholar 

  • Hagemann, M., 2002. Environmental stress, signalling and basic acclimation reactions. In Solheim, R. et al. (eds), Cyanobacteria and Nitrogen Fixation in Extreme Environments. European Science Foundation CYANOFIX: 24 (Abstract).

  • Hayes, P. K., J. Batley & C. Jenkins, 2006. Gene exchange within populations of Nodularia spumigena in the Baltic Sea. Program and Abstract, 12th International Symposium of Phototrophic Prokaryotes, Pau: 87 (Abstract).

  • Hoffmann, L., J. Komárek & J. Kaštovský, 2005. System of cyanoprokaryotes (cyanobacteria) – state in 2004. Algological Studies (Cyanobacterial Research 6) 117: 95–115.

    Article  Google Scholar 

  • Hrouzek, P., S. Ventura, A. Lukešová, M. A. Mugnai, S. Turicchia & J. Komárek, 2005. Diversity of soil Nostoc strains: phylogenetic and morphological variability. Algological Studies (Cyanobacterial Research 6) 117: 251–264.

    Article  Google Scholar 

  • Iteman, I., R. Rippka, N. Tandeau de Marsac & M. Herdman, 2002. rDNA analyses of planktonic heterocystous cyanobacteria, including members of the genera Anabaenopsis and Cyanospira. Microbiology 148: 481–496.

    CAS  PubMed  Google Scholar 

  • Jezberová, J., 2006. Phenotypic diversity and phylogeny of picocyanobacteria in mesotrophic and euthrophic freshwater reservoirs investigated by a cultivation-dependent polyphasic approach. PhD Thesis, Fac. Biol. Sci, Univ., South Bohemia: 76pp.

  • Johansen, J. R. & D. A. Casamatta, 2005. Recognizing cyanobacterial diversity through adoption of a new species paradigm. Algological Studies (Cyanobacterial Research 6) 117: 71–93.

    Article  Google Scholar 

  • Joosten, A. M. T., 2006. Flora of the blue-green algae of the Netherlands. 1. The non-filamentous species of inland waters. KNNV Publ.Utrecht: 239 pp.

  • Katoh, H., S. Itoh, J.-R. Shen & M. Ikeuchi, 2001. Functional analysis of psbV and a novel c-type cytochrome gene psbV2 of the thermophilic cyanobacterium Thermosynechococcus elongatus strain BP-1. Plant and Cell Physiology 42: 599–607.

    Article  CAS  PubMed  Google Scholar 

  • Kohl, J.-G. & A. Nicklisch, 1981. Chromatic adaptation of the planktic blue-green alga Oscillatoria redekei Van Goor and its ecological significance. Internationale Revue der gesamten Hydrobiologie 66: 83–94.

    Article  Google Scholar 

  • Komárek, J., 1976. Taxonomic review of the genera Synechocystis SAUV. 1892, Synechococcus NÄG. 1849 and Cyanothece gen. nov. (Cyanophyceae). Archiv für Protistenkunde 118: 119–179.

    Google Scholar 

  • Komárek, J., 2008. The cyanobacterial genus Macrospermum. Fottea (Olomouc) 8: 79–86.

    Google Scholar 

  • Komárek, J., 2009. Modern taxonomic revision of planktic nostocacean cyanobacteria: a short review of genera. Hydrobiologia 30. doi:10.1007/s10750-009-0030-4.

  • Komárek, J. & K. Anagnostidis, 1989. Modern approach to the classification system of cyanophytes 4 – Nostocales. Algological Studies 56: 247–345.

    Google Scholar 

  • Komárek, J. & K. Anagnostidis, 2005. Cyanoprokaryota-2. Teil/2nd Part: oscillatoriales. In Büdel B., Krienitz L., Gärtner G. & Schagerl M. (eds), Süsswasserflora von Mitteleuropa 19/2. Elsevier/Spektrum, Heidelberg: 759 pp.

  • Komárek, J. & S. Golubić, 2005. Proposal for unified nomenclatural rules for Cyanobacteria vs. Cyanophytes: “Cyano-Guide”. In Hoffmann, L. (ed.), Nomenclature of Cyanophyta/Cyanobacteria: Roundtable on the Unification of the Nomenclature Under the Botanical and Bacteriological Codes. Algological Studies (Cyanobacterial Research 6) 117: 17–18.

  • Komárek, J. & J. Kaštovský, 2003a. Coincidences of structural and molecular characters in evolutionary lines of cyanobacteria. Algological Studies (Cyanobacterial Research 4) 109: 305–325.

    Article  Google Scholar 

  • Komárek, J. & J. Kaštovský, 2003b. Adaptability in diversification processes of cyanobacteria; the example of Synechococcus bigranulatus. Algological Studies (Cyanobacterial Research 4) 109: 299–304.

    Article  Google Scholar 

  • Komárek, J., V. Cepák, J. Kaštovský & J. Sulek, 2004. What are the cyanobacterial genera Cyanothece and Cyanobacterium? Contribution to the combined molecular and phenotype taxonomic evaluation of cyanobacterial diversity. Algological Studies (Cyanobacterial Ressearch 5) 113: 1–36.

    Article  Google Scholar 

  • Komárek, J., J. Kaštovský, S. Ventura, S. Turicchia & J. Šmarda, 2009. The cyanobacterial genus Phormidesmis. Algological Studies 129(1): 41–59.

    Article  Google Scholar 

  • Korelusová, J., J. Kaštovský & J. Komárek, 2009. Diversity of the cyanobacterial genus Synechocystis Sauvegeau and Geminocystis genus nova. Journal of Phycology 45: 928–937.

    Article  Google Scholar 

  • Lyra, C., S. Suomalainen, M. Gugger, C. Vezie, P. Sundman, L. Paulin & K. Sivonen, 2001. Molecular characterization of planktic cyanobacteria of Anabaena, Aphanizomenon, Microcystis and Planktothrix genera. International Journal of Systematic and Evolutionary Microbiology 51: 513–526.

    CAS  PubMed  Google Scholar 

  • Margheri, M. C., M. Bosco, L. Giovannetti & S. Ventura, 1999. Assessment of the genetic diversity of halotolerant coccoid cyanobacteria using amplified 16S rDNA restriction analysis. FEMS Microbiological Letters 173: 9–16.

    Article  CAS  Google Scholar 

  • Miyashita, H., H. Ikemoto, N. Kurano & S. Miachi, 2003. Acaryochloris marina gen. et sp. nov. (Cyanobacteria), an oxygenic photosynthetic prokaryote containing chl d as a major pigment. Journal of Phycology 39: 1247–1253.

    Article  CAS  Google Scholar 

  • Nübel, U., F. Garcia-Pichel & G. Muyzer, 2000. The halotolerance and phylogeny of cyanobacteria with tightly coiled trichomes (Spirulina Turpin) and the description of Halospirulina tapeticola gen. nov., sp. nov. International Journal of Systematic and Evolutionary Microbiology 50: 1265–1277.

    PubMed  Google Scholar 

  • Oren, A., 2004. A proposal for further integration of the cyanobacteria under the Bacteriological Code. International Journal of Systematic and Evolutionary Microbiology 54: 1895–1902.

    Article  PubMed  Google Scholar 

  • Oren, A. & B. J. Tindall, 2005. Nomenclature of the cyanophyta/cyanobacteria/cyanoprokaryotes under the International Code of nomenclature of Prokaryotes. Algological Studies (Cyanobacterial Research 6) 117: 39–52.

    Article  Google Scholar 

  • Rajaniemi, P., J. Komárek, R. Willame, P. Hrouzek, K. Kaštovská, L. Hoffmann & K. Sivonen, 2005. Taxonomic consequences from the combined molecular and phenotype evaluation of selected Anabaena and Aphanizomenon strains. Algological Studies 117 (Cyanobacterial Research 6): 371–391.

  • Rippka, R. & G. Cohen-Bazire, 1983. The Cyanobacteriales: a legitimate order based on the type strain Cyanobacterium stanieri? Annales de Microbiologie 134B: 21–36.

    CAS  PubMed  Google Scholar 

  • Rudi, K., O. M. Skulberg, F. Larsen & K. S. Jakobsen, 1997. Strain characterization and classification of oxyphotobacteria in clone cultures on the basis of 16S rRNA sequences from the variable regions V6, V7 and V8. Applied and Environmental Microbiology 63: 2593–2599.

    CAS  PubMed  Google Scholar 

  • Rudi, K., O. M. Skulberg & K. S. Jakobsen, 1998. Evolution of cyanobacteria by exchange of genetic material among phyletically related strains. Journal of Bacteriology 180: 3453–3461.

    CAS  PubMed  Google Scholar 

  • Sáez, A. G. & E. Lozano, 2005. Body doubles. Nature 433: 111.

    Article  PubMed  Google Scholar 

  • Six, C., J.-C. Thomas, L. Garczarek, M. Ostrowski, A. Dufresne, N. Blot, D. J. Scanlan & F. Partensky, 2007. Diversity and evolution of phycobilisomes in marine Synechococcus spp.: a comparative genomics study. Genome Biology 8(12): R259.1–R25922.

    Article  Google Scholar 

  • Skulberg, O. M. & R. Skulberg, 1985. Planktic species of Oscillatoria (Cyanophyceae) from Norway. Characterization and classification. Algological Studies 38(39): 157–174.

    Google Scholar 

  • Stackebrand, E. & B. M. Goebel, 1994. Taxonomic Note: a for place for DNA–DNA reassociationand 16S rRNA sequence analysis in the present species definition in Bacteriology. International Journal of Systematic and Evolutionary Microbiology 44: 846–849.

    Article  Google Scholar 

  • Stanier, R. Y., W. R. Sistrom, T. A. Hansen, B. A. Whitton, R. W. Castenholz, N. Pfennig, V. N. Gorlenko, E. N. Kondratieva, K. E. Eimhjellen, R. Whittenbury, R. L. Gherna & H. G. Trüper, 1978. Proposal to place the nomenclature of the cyanobacteria (blue–green algae) under the rules of the International Code of Nomenclature of Bacteria. International Journal of Systematic and Evolutionary Microbiology 28: 335–336.

    Article  Google Scholar 

  • Suda, S., M. M. Watanabe, S. Otsuka, A. Mahakahant, W. Yongmanitchai, N. Nopartnaraporn, Y. Liu & J. G. Day, 2002. Taxonomic revision of water bloom-forming species of oscillatorioid cyanobacteria. International Journal of Systematic and Evolutionary Microbiology 52: 1577–1595.

    Article  CAS  PubMed  Google Scholar 

  • Turicchia, S., S. Ventura, J. Komárek, E. Soldati & J. Komárková-Legnerová, 2009. Molecular and phenotype evaluation of oscillatorialean cyanobacteria from alkaline marshes of Northern Belize. Nova Hedwigia 89(1–2): 165–200.

    Article  Google Scholar 

  • Turner, S., 1997. Molecular systematics of oxygenic photosynthetic bacteria. Plant Systematics and Evolution 11: 13–52.

    CAS  Google Scholar 

  • Waterbury, J. B., S. W. Watson, R. R. L. Guillard & L. E. Brand, 1979. Wide spread occurrence of a unicellular, marine, planktonic cyanobacterium. Nature 277(5694): 293–294.

    Article  Google Scholar 

  • Wayne, L. G., D. J. Brenner, R. R. Colwell, P. A. D. Grimont, O. Kandler, M. I. Krichevsky, W. E. C. Moore, R. G. E. Murray, E. Stackebrand, M. P. Starr & H. G. Trüper, 1987. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. International Journal of Systematic and Evolutionary Microbiology 37: 463–464.

    Article  Google Scholar 

  • Willame, R., C. Boutte, S. Grubisic, A. Wilmotte, J. Komárek & L. Hoffmann, 2006. Morphological and molecular characterisation of planktonic cyanobacteria from Belgium and Luxembourg. Journal of Phycology 42: 1312–1332.

    Article  CAS  Google Scholar 

  • Wilmotte, A. & S. Golubić, 1991. Morphological and genetic criteria in the taxonomy of Cyanophyta/Cyanobacteria. Algological Studies 64: 1–24.

    Google Scholar 

  • Zehr, J. P., J. B. Waterbury, P. J. Turner, J. P. Montoya, E. Omoregie, G. F. Steward, A. Hansen & D. M. Karl, 2001. Unicellular Cyanobacteria fix N2 in the subtropical North Pacific Ocean. Nature 421: 635–638.

    Article  Google Scholar 

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Acknowledgements

This work was supported by grant GA AVCR No. IAA600050704. The author is thankful to all colleagues who are interested in the reorganization of the modern taxonomic system of cyanobacteria. This work was presented as an invited paper at the Bat Sheva de Rothschild seminar on Phytoplankton in the Physical Environment—The 15th Workshop of the International Association of Phytoplankton Taxonomy and Ecology, IAP (Israel).

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Correspondence to Jiří Komárek.

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Guest editors: T. Zohary, J. Padisák & L. Naselli-Flores / Phytoplankton in the Physical Environment: Papers from the 15th Workshop of the International Association for Phytoplankton Taxonomy and Ecology (IAP), held at the Ramot Holiday Resort on the Golan Heights, Israel, 23–30 November 2008

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Komárek, J. Recent changes (2008) in cyanobacteria taxonomy based on a combination of molecular background with phenotype and ecological consequences (genus and species concept). Hydrobiologia 639, 245–259 (2010). https://doi.org/10.1007/s10750-009-0031-3

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