Abstract
Equisetum is a genus of 15 extant species that are the sole surviving representatives of the class Sphenopsida. The generally accepted taxonomy of Equisetum recognizes two subgenera: Equisetum and Hippochaete. Two recent phylogenetical studies have independently questioned the monophyly of subgenus Equisetum. Here, I use original (atpB) and published (rbcL, trnL-trnF, rps4) sequence data to investigate the phylogeny of the genus. Analyses of atpB sequences give an unusual topology, with E. bogotense branching within Hippochaete. A Bayesian analysis based on all available sequences yields a tree with increased resolution, favoring the sister relationships of E. bogotense with subgenus Hippochaete.
References
Alfaro ME, Zoller S, Lutzoni F (2003) Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence. Mol Biol Evol 20:255–266
Des Marais DL, Smith AR, Britton DM, Pryer KM (2003) Phylogenetic relationships and evolution of extant horsetails, Equisetum, based on chloroplast DNA sequence data (rbcL and trnL-F). Int J Plant Sci 164:737–751
Duckett JG (1973) Comparative morphology of the gametophytes of the genus Equisetum, subgenus Equisetum. Bot J Linn Soc 66:1–22
Duckett JG (1979) An experimental study of the reproductive biology and hybridization in the European and North American species of Equisetum. Bot J Linn Soc 79:205–229
Farris JS, Källersjo AG, Kluge AG, Bult C (1995) Testing significance of incongruence. Cladistics 10:315–319
Guillon J-M (2004) Phylogeny of horsetails (Equisetum) based on the chloroplast rps4 gene and adjacent noncoding sequences. Syst Bot 29:251–259
Hauke RL (1963) A taxonomical monograph of the genus Equisetum subgenus Hippochaete. Beheifte zur Nova Hedwigia 8:1–123
Hauke R L (1968) Gametangia of Equisetum bogotense. Bull Torrey Bot Club 95:341–345
Hauke RL (1969) Gametophyte development in Latin American horsetails. Bull Torrey Bot Club 96:568–577
Hauke RL (1978) A taxonomic monograph of Equisetum subgenus Equisetum. Nova Hedwigia 30:385–455
Hauke RL (1985) Gametophytes of Equisetum giganteum. Am Fern J 75:132
Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogeny. Bioinformatics 17:754–755
Kass RE, Raftery AE (1995) Bayes factors. J Am Stat Assoc 90:773–795
Kenrick P, Crane PR (1997) The origin and early evolution of plants on land. Nature 389:33–39
Korall P, Pryer KM, Metzgar JS, Schneider H, Conant DS (2006) Tree ferns : monophyletic groups and their relationships as revealed by four protein-coding plastid loci. Mol Phylogenet Evol 39:830–845
Krahulec F, Hrouda L, Kovarova M (1996). Production of gametophytes by Hippochaete (Equisetaceae) hybrids. Preslia 67:213–218
Lecointre G, Deleporte P (2005) Total evidence requires exclusion of phylogenetically misleading data. Zool Scr 34:101–117
Maddison WP (1997) Gene trees in species trees. Syst Biol 46:523–536
Nickrent DL, Parkinson CL, Palmer JD, Duff RJ (2000) Multigene phylogeny of land plants with special reference to bryophytes and the earliest land plants. Mol Biol Evol 17:1885–1895
Page CN (1972) An assessment of inter-specific relationships in Equisetum subgenus Equisetum. New Phytol 71:355–369
Pryer KM, Schneider H, Smith AR, Cranfill R, Wolf PG, Hunt JS, Sipes SD (2001) Horsetails and ferns are a monophyletic group and the closest living relatives to seed plants. Nature 409:618–621
Renzaglia KS, Duff RJ, Nickrent DL, Garbary DJ (2000) Vegetative and reproductive innovations of early land plants: implications for a unified phylogeny. Philos Trans R Soc B 355:769–793
Renzaglia KS, Dengate SB, Schmitt SJ, Duckett JG (2002) Novel features of Equisetum arvense spermatozoids: insights into pteridophyte evolution. New Phytol 154:159–174
Ronquist F, Huelsenbeck JP (2003) MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572–1574
Rosenthal A, Coutelle O, Craxton M (1993) Large-scale production of DNA sequencing templates by microtitre format PCR. Nucleic Acids Res 21:173–174
Schaffner JH (1925) Main lines of evolution in Equisetum. Am Fern J 15:8–12
Schaffner JH (1930) Geographical distribution of the species of Equisetum in relation to their phylogeny. Am Fern J 20:89–106
Simmons MP, Pickett KM, Miya M (2004) How meaningful are Bayesian support values ? Mol Biol Evol 21:188–199
Swofford DL (2002) PAUP*: phylogenetic analyses using parsimony (* and other methods), version 4.0b10. Sinauer Associates, Sunderland
Tsutsumi C, Kato M (2005) Molecular phylogenetic study on Davalliaceae. Fern Gaz 17:147–162
Wikström KM, Pryer KM (2005) Incongruence between primary sequence data and the distribution of a mitochondrial atp1 group II intron among ferns and horsetails. Mol Phylogenet Evol 36:484–493
Wolf PG (1997) Evaluation of atpB nucleotide sequences for phylogenetic studies of ferns and other pteridophytes. Am J Bot 84:1429–1440
Acknowledgments
I thank Marc Girondot, Bernard Lejeune, and Sophie Nadot for useful advice and discussion. Odile Jonot, Paola Bertolino, and Catherine Colombeau are acknowledged for their help in DNA extractions and amplifications. Chad Husby provided plants from his personal collections and commented on the manuscript. Chad Husby and Franz Tod kindly collected many wild plants for me. I am also grateful to many people who sent me plants and, in some cases, vouchered them for me: Peter Atkinson at Cambridge University Botanic Garden; Holly Forbes at University of California Botanic Garden; Mike Gross at Georgian Court College; Philip O. Ashby, Fiona Inches, and Adele Smith at Royal Botanic Garden, Edinburgh; Sophie Dunand-Martin et Philippe Clerc at Conservatoire et Jardin Botanique de la Ville de Genève; Clinton Morse and Andrew Doran at University of Connecticut; and Nathalie Machon at Conservatoire National Botanique du Bassin Parisien. Tatiana Giraud, Claire Lavigne, Roxana Yockteng, and Odylle Cudelou are also acknowledged for their help.
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Guillon, JM. Molecular phylogeny of horsetails (Equisetum) including chloroplast atpB sequences. J Plant Res 120, 569–574 (2007). https://doi.org/10.1007/s10265-007-0088-x
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s10265-007-0088-x