Skip to main content

Advertisement

Log in

A comprehensive radiation hybrid map of bovine Chromosome 26 (BTA26): comparative chromosomal organization between HSA10q and BTA26 and BTA28

  • Published:
Mammalian Genome Aims and scope Submit manuscript

Abstract

In this study, we present a comprehensive 3000-rad radiation hybrid (RH) map of bovine Chromosome (Chr) 26 (BTA26) with 80 markers including 50 genes or ESTs: 44 have an ortholog mapping to human Chr 10 (HSA10) and 29 to mouse Chr (MMU) 7, 10, and 19. Moreover, 12 other HSA10 genes were integrated in a newly developed RH map of BTA28 (seven represent new assignments). The available draft of the mouse genome allowed us to present a detailed picture of the distribution of conserved synteny segments among the three species (human, cattle, and mouse) and to propose a simple model of the comparative chromosomal organization between the long arm of HSA10 and BTA26 and 28. Finally, the INRA bovine BAC library was screened for most of the BTA26 markers considered in this study to provide anchors for the bovine physical map.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Figure 1
Figure 2

Similar content being viewed by others

References

  1. MR Band JH Larson M Redeiz CA Green DW Heyen et al. (2000) ArticleTitleAn ordered comparative map of the cattle and human genomes. Genome Res 10 1359–1368 Occurrence Handle1:CAS:528:DC%2BD3cXms1yjur4%3D Occurrence Handle10984454

    CAS  PubMed  Google Scholar 

  2. W Barendse D Vaiman SJ Kemp Y Sugimoto SM Armitage et al. (1997) ArticleTitleA medium density genetic linkage map of the bovine genome. Mamm Genome 8 21–23 Occurrence Handle1:CAS:528:DyaK2sXnsVOgsw%3D%3D Occurrence Handle9021143

    CAS  PubMed  Google Scholar 

  3. A Bonnet S Thevenon F Claro M Gautier H Hayes (2001) ArticleTitleCytogenetic comparison between Vietnamese sika deer and cattle: R-banded karyotypes and FISH mapping. Chromosome Res 9 673–687 Occurrence Handle1:CAS:528:DC%2BD3MXptlKqu7Y%3D Occurrence Handle11778690

    CAS  PubMed  Google Scholar 

  4. DW Burt C Bruley IC Dunn CT Jones A Ramage et al. (1999) ArticleTitleThe dynamics of chromosome evolution in birds and mammals. Nature 402 411–413 Occurrence Handle1:CAS:528:DyaK1MXnvVyku7g%3D Occurrence Handle10586880

    CAS  PubMed  Google Scholar 

  5. BP Chowdhary L Frönicke I Gustavsson H Scherthan (1996) ArticleTitleComparative analysis of the cattle and human genomes: detection of ZOO-FISH and gene mapping-based chromosomal homologies. Mamm Genome 7 297–302 Occurrence Handle1:CAS:528:DyaK28Xjt1Wrtb8%3D Occurrence Handle8661702

    CAS  PubMed  Google Scholar 

  6. DR Cox M Burmeister ER Price S Kim RM Myers (1990) ArticleTitleRadiation hybrid mapping: a somatic cell genetic method for constructing high resolution maps of mammalian chromosomes. Science 250 245–250 Occurrence Handle1:CAS:528:DyaK3cXmt1Gkur4%3D Occurrence Handle2218528

    CAS  PubMed  Google Scholar 

  7. A Eggen M Gautier A Billault E Petit H Hayes et al. (2001) ArticleTitleConstruction and characterization of a bovine BAC library with four genome-equivalent coverage. Genet Sel Evol (Paris) 33 543–548 Occurrence Handle1:CAS:528:DC%2BD3MXovFOls74%3D

    CAS  Google Scholar 

  8. L Fronicke J Wienberg (2001) ArticleTitleComparative chromosome painting defines the high rate of karyotype changes between pigs and bovids. Mamm Genome 12 442–449 Occurrence Handle1:CAS:528:DC%2BD3MXjs1Cnsr4%3D Occurrence Handle11353391

    CAS  PubMed  Google Scholar 

  9. M Gautier H Hayes S Taourit P Laurent A Eggen (2001) ArticleTitleSyntenic assignment of sixteen genes from the long arm of human chromosome 10 to bovine chromosomes 26 and 28: refinement of the comparative map. Chromosome Res 9 617–621 Occurrence Handle1:CAS:528:DC%2BD3MXptlKqurY%3D Occurrence Handle11778684

    CAS  PubMed  Google Scholar 

  10. M Gautier H Hayes A Eggen (2002) ArticleTitleAn extensive and comprehensive radiation hybrid map of bovine Chromosome 15: comparison with human Chromosome 11. Mamm Genome 13 316–319 Occurrence Handle1:CAS:528:DC%2BD38Xlt1Cht7g%3D Occurrence Handle12115035

    CAS  PubMed  Google Scholar 

  11. M Georges L Andersson (1996) ArticleTitleLivestock genomics comes of age. Genome Res 6 907–921 Occurrence Handle1:CAS:528:DyaK28XmsVWltb4%3D Occurrence Handle8908510

    CAS  PubMed  Google Scholar 

  12. SG Gregory M Sekhon J Schein S Zhao K Osoegawa et al. (2002) ArticleTitleA physical map of-the mouse genome. Nature 418 743–750 Occurrence Handle10.1038/nature00957 Occurrence Handle1:CAS:528:DC%2BD38XmtV2nsr8%3D Occurrence Handle12181558

    Article  CAS  PubMed  Google Scholar 

  13. H Hayes (1995) ArticleTitleChromosome painting with human chromosome-specific DNA libraries reveals the extent and distribution of conserved segments in bovine chromosomes. Cytogenet Cell Genet 71 168–174 Occurrence Handle1:CAS:528:DyaK2MXovVamtr8%3D Occurrence Handle7656590

    CAS  PubMed  Google Scholar 

  14. SM Kappes JW Keele RT Stone RA McGraw TS Sonstergard et al. (1997) ArticleTitleA second-generation linkage map of the bovine genome. Genome Res 7 235–249 Occurrence Handle1:CAS:528:DyaK2sXhvFamsbo%3D Occurrence Handle9074927

    CAS  PubMed  Google Scholar 

  15. J Kim L Gordon P Dehal H Badri M Christensen et al. (2001) ArticleTitleHomology-driven assembly of a sequence-ready mouse BAC contig map spanning regions related to the 46-Mb gene-rich euchromatic segments of human chromosome 19. Genomics 74 129–141 Occurrence Handle1:CAS:528:DC%2BD3MXjvFCjsrs%3D Occurrence Handle11386749

    CAS  PubMed  Google Scholar 

  16. ES Lander LM Linton B Birren C Nusbaum MC Zody et al. (2001) ArticleTitleInitial sequencing and analysis of the human genome. Nature 409 860–921 Occurrence Handle1:CAS:528:DC%2BD3MXhsFCjtLc%3D Occurrence Handle11237011

    CAS  PubMed  Google Scholar 

  17. K Lange M Boehnke DR Cox KL Lunetta (1995) ArticleTitleStatistical methods for polyploid radiation hybrid mapping. Genome Res 5 136–150 Occurrence Handle1:CAS:528:DyaK2MXos1arurc%3D Occurrence Handle9132268

    CAS  PubMed  Google Scholar 

  18. P Laurent C Elduque H Hayes K Saunier A Eggen et al. (2000) ArticleTitleAssignment of 60 human ESTs in cattle. Mamm Genome 11 748–754 Occurrence Handle1:CAS:528:DC%2BD3cXnt1Oluro%3D Occurrence Handle10967133

    CAS  PubMed  Google Scholar 

  19. SJ O’Brien M Menotti-Raymond WJ Murphy WG Nash J Wienberg et al. (1999) ArticleTitleThe promise of comparative genomics in mammals. Science 286 458–462 Occurrence Handle1:CAS:528:DyaK1MXmvVOht74%3D Occurrence Handle10521336

    CAS  PubMed  Google Scholar 

  20. CP Popescu S Long P Riggs JE Womack S Schmutz et al. (1996) ArticleTitleStandardization of cattle karyotype nomenclature: report of the committee for the standardization of the cattle karyotype. Cytogenet Cell Genet 74 259–261 Occurrence Handle1:CAS:528:DyaK2sXjtVaqsA%3D%3D Occurrence Handle8976379

    CAS  PubMed  Google Scholar 

  21. CE Rexroad EK Owens JS Johnson JE Womack (2000) ArticleTitleA 12,000 rad whole genome radiation hybrid panel for high resolution mapping in cattle: characterization of the centromeric end of chromosome 1. Anim Genet 31 262–265 Occurrence Handle10.1046/j.1365-2052.2000.00641.x Occurrence Handle1:CAS:528:DC%2BD3cXotlyqsr8%3D Occurrence Handle11086535

    Article  CAS  PubMed  Google Scholar 

  22. L Schibler D Vaiman A Oustry C Giraud-Delville EP Cribiu (1998) ArticleTitleComparative gene mapping: a fine-scale survey of chromosome rearrangements between ruminants and humans. Genome Res 8 901–915 Occurrence Handle1:CAS:528:DyaK1cXmsVWgt7w%3D Occurrence Handle9750190

    CAS  PubMed  Google Scholar 

  23. T Schiex P Chabrier M Bouchez D Milan (2001) ArticleTitleBoosting EM for radiation hybrid and genetic mapping. WABI’2001 (Workshop on Algorithms in Bioinformatics). LNCS 2149 41–51

    Google Scholar 

  24. K Schmitt JW Foster W Feakes C Knights ME Davis et al. (1996) ArticleTitleConstruction of a mouse whole-genome radiation hybrid panel and application to MMU11. Genomics 34 193–197 Occurrence Handle1:CAS:528:DyaK28XjsFOrurY%3D Occurrence Handle8661048

    CAS  PubMed  Google Scholar 

  25. J Slate TC Van Stijn RM Anderson KM McEwan NJ Maqbool et al. (2002) ArticleTitleA deer (subfamily Cervinae) genetic linkage map and the evolution of ruminant genomes. Genetics 160 1587–1597 Occurrence Handle1:CAS:528:DC%2BD38XktFahsbc%3D Occurrence Handle11973312

    CAS  PubMed  Google Scholar 

  26. S Solinas-Toldo C Lengauer R Fries (1995) ArticleTitleComparative genome map of human and cattle. Genomics 27 489–496 Occurrence Handle1:CAS:528:DyaK2MXmvVSnt70%3D Occurrence Handle7558031

    CAS  PubMed  Google Scholar 

  27. JL Williams A Eggen L Ferretti C Farr M Gautier et al. (2002) ArticleTitleA bovine whole-genome radiation hybrid panel and outline map. Mamm Genome 13 469–474 Occurrence Handle1:CAS:528:DC%2BD38XmslGmu7s%3D Occurrence Handle12226714

    CAS  PubMed  Google Scholar 

  28. JE Womack JS Johnson EK Owens CE Rexroad 3rd J Schlapfer et al. (1997) ArticleTitleA whole-genome radiation hybrid panel for bovine gene mapping. Mamm Genome 8 854–856 Occurrence Handle10.1007/s003359900593 Occurrence Handle1:CAS:528:DyaK2sXnt1Chsbc%3D Occurrence Handle9337401

    Article  CAS  PubMed  Google Scholar 

  29. YP Yang JE Womack (1998) ArticleTitleParallel radiation hybrid mapping: a powerful tool for high-resolution genomic comparison. Genome Res 8 731–736 Occurrence Handle1:CAS:528:DyaK1cXltFels7w%3D Occurrence Handle9685320

    CAS  PubMed  Google Scholar 

  30. J Yoo RT Stone SM Kappes SS Toldo R Fries et al. (1996) ArticleTitleGenomic organization and chromosomal mapping of the bovine Fas/APO-1 gene. DNA Cell Biol 15 377–385 Occurrence Handle1:CAS:528:DyaK28XjtFamu7g%3D Occurrence Handle8924212

    CAS  PubMed  Google Scholar 

Download references

Acknowledgements

This work is part of the European project ComRad Map and was supported by the EEC grant BIO4-CT98-0277.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to André Eggen.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Gautier, M., Hayes, H. & Eggen, A. A comprehensive radiation hybrid map of bovine Chromosome 26 (BTA26): comparative chromosomal organization between HSA10q and BTA26 and BTA28 . Mamm Genome 14, 711–721 (2003). https://doi.org/10.1007/s00335-003-3014-0

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00335-003-3014-0

Keywords

Navigation