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Automatic Kidney Segmentation Using Gaussian Mixture Model on MRI Sequences

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Electrical Power Systems and Computers

Part of the book series: Lecture Notes in Electrical Engineering ((LNEE,volume 99))

Abstract

Robust kidney segmentation from MR images is a very difficult task due to the especially gray level similarity of adjacent organs, partial volume effects and injection of contrast media. In addition to different image characteristics with different MR scanners, the variations of the kidney shapes, gray levels and positions make the identification and segmentation task even harder. In this paper, we propose an automatic kidney segmentation approach using Gaussian mixture model (GMM) that adapts all parameters according to each MR image dataset to handle all these challenging problems. The efficiency in terms of the segmentation performance is achieved by the estimation of the GMM parameters using the Expectation Maximization (EM) method. The segmentation approach is compared to k-means method. The results show that the model based probabilistic segmentation technique gives better performance for both low contrast images and atypical kidney shapes where several algorithms fail on abdominal MR images.

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References

  1. Kobashi, L., Shapiro, M.: Knowledge-based Organ Identification from CT Images. Pattern Recognition 28, 475–491 (1995)

    Article  Google Scholar 

  2. Lin, D.T., Lei, C.C., Hsiung, S.Y.: An Efficient Method for Kidney Segmentation on Abdominal CT Images. In: 8th Australian and New Zealand Intelligent Information Systems Conference, Sydney, Australia, pp. 75–82 (2003)

    Google Scholar 

  3. Pohle, R., Tönnies, K.D.: A New Approach for Model-Based Adaptive Region Growing in Medical Image Analysis. In: Skarbek, W. (ed.) CAIP 2001. LNCS, vol. 2124, pp. 238–246. Springer, Heidelberg (2001)

    Chapter  Google Scholar 

  4. Pohle, R., Toennies, K.D.: Segmentation of Medical Images Using Adaptive Region Growing. In: Proceedings of the Medical Imaging Conference of SPIE, vol. 4322, pp. 1337–1346 (2001)

    Google Scholar 

  5. Pohle, R., Toennies, K.D.: Self-learning Model-based Segmentation of Medical Images. Image Processing & Communication 7, 97–113 (2001)

    Google Scholar 

  6. Yan, G., Wang, B.: An Automatic Kidney Segmentation from Abdominal CT Images. In: International Conference on Intelligent Computing and Intelligent Systems (ICIS), pp. 280–284. IEEE Press, Xiamen (2010)

    Chapter  Google Scholar 

  7. Spiegel, M., Hahn, D.A., Daum, V., Wasza, J., Hornegger, J.: Segmentation of Kidneys Using a New Active Shape Model Generation Technique Based on Non-rigid Image Registration. Computerized Medical Imaging and Graphics 33, 29–39 (2009)

    Article  Google Scholar 

  8. Huang, C.L., Kuo, L.Y., Huang, Y.J., Lin, Y.H.: Shape-based Level Set Method for Kidney Segmentation on CT Image. In: 22nd Conference on Computer Vision, Nantou, Taiwan (2009)

    Google Scholar 

  9. Tsagaan, B., Shimizu, A., Kobatake, H., Kunihisa, M., Hanzawa, Y.: Segmentation of Kidney by Using a Deformable Model. In: International Conference on Image Processing (ICIP), pp. 1059–1062. IEEE Press, Thessaloniki (2001)

    Google Scholar 

  10. Tsagaan, B., Shimizu, A., Kobatake, H., Miyakawa, K.: An automated segmentation method of kidney using statistical information. In: Dohi, T., Kikinis, R. (eds.) MICCAI 2002. LNCS, vol. 2488, pp. 556–563. Springer, Heidelberg (2002)

    Chapter  Google Scholar 

  11. Tang, Y., Jackson, H., Lee, S., Nelson, M., Moats, R.A.: Shape-aided Kidney Extraction in MR Urography. In: 31st Annual International Conference on Engineering in Medicine and Biology Society (EMBS), pp. 5781–5784. IEEE Press, Minneapolis (2009)

    Google Scholar 

  12. Shental, N., Bar-Hillel, A., Hertz, T., Weinshall, D.: Computing Gaussian Mixture Models with EM Using Equivalence Constraints. In: Advances in Neural Information Processing System, vol. 15, pp. 465–473 (2003)

    Google Scholar 

  13. Dempster, A., Laird, N., Rubin, D.: Maximum Likelihood from Incomplete Data via the EM Algorithm. Journal of the Royal Statistical Society 39, 1–38 (1977)

    MATH  MathSciNet  Google Scholar 

  14. Duda, R.O., Hart, P.E., Stork, D.G.: Pattern Classification, 2nd edn. John Wiley and Sons Inc., New York (2000)

    Google Scholar 

  15. Abdelmunim, H., Farag, A.A., Miller, W., AbdelGhar, M.: A Kidney Segmentation Approach from DCE-MRI Using Level Sets. In: Conference on Computer Vision and Pattern Recognition Workshops (CVPRW), pp. 1–6. IEEE Press, Anchorage (2008)

    Chapter  Google Scholar 

  16. Blum, H.A.: Transformation for Extracting New Descriptors of Shapes. In: Wathen-Dunn, W. (ed.) Models for the Perception of Speech and Visual Form, pp. 362–380. MIT Press, Cambridge (1967)

    Google Scholar 

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Goceri, E. (2011). Automatic Kidney Segmentation Using Gaussian Mixture Model on MRI Sequences. In: Wan, X. (eds) Electrical Power Systems and Computers. Lecture Notes in Electrical Engineering, vol 99. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-21747-0_4

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  • DOI: https://doi.org/10.1007/978-3-642-21747-0_4

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-21746-3

  • Online ISBN: 978-3-642-21747-0

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