Abstract
Lipid organization in membranes forms liquid crystalline structures.
This is a preview of subscription content, log in via an institution.
Buying options
Tax calculation will be finalised at checkout
Purchases are for personal use only
Learn about institutional subscriptionsReferences
Aguilella, V. M. and Bezrukov, S. M.: Alamethicin channel conductance modified by lipid charge. Eur. Biophys. J. 30, 233–241 (2001).
Allen, T. W., Andersen, O.S. and Roux, B.: Energetics of ion conduction through the gramicidin channel. Proc. Natl. Acad. Sci. 101, 117–122 (2004).
Andersen, O.S., D. B. Sawyer and Koeppe, R.E. II. In: Biomembrane structure and Function, K. R. K. Easwaran and B. Gaber (eds.) p227. Schenectady, New York: Adenine (1992).
Andersen, O.S.: Ion movement through Gramicidin A Channels - Studies on the Diffusion-controlled Association Step. Biophys. J. 41, 147–165 (1983).
Andersen, O.S., Nielsen, C., Maer, A. M., Lundbæk, J. A., Goulian, M. and Koeppe, R.E. II: Gramicidin channels: molecular force transducers in lipid bilayers. Biol. Skr. Dan. Vid. Selsk. 49, 75–82 (1998).
Andersen, O.S. and Koeppe, R.E. II: Bilayer thickness and membrane protein function: an energetic perspective. Annu. Rev. Biophys. Biomol. Struct. 36, 107–130 (2007).
Andersen, O.S., Koeppe, R.E. II and Roux, B.: Gramicidin Channels. IEEE Trans. Nanobiosci. 4, 10–20 (2005).
Arseniev, A. S., Barsukov, I. L., Bystrov, V.F. and Ovchinnikov, Yu. A.: Biol. Membr. 3, 437 (1986).
Ashrafuzzaman, M. and Beck, H.: In Vortex dynamics in two-dimensional Josephson junction arrays, University of Neuchatel, ch 5 p 85, (2004) http://doc.rero.ch/record/2894ln=fr
Ashrafuzzaman, M. and Andersen, O.S.: Lipid bilayer elasticity and intrinsic curvature as regulators of channel function: a single molecule study. Biophys. J. 421A (2007).
Ashrafuzzaman, M., McElhaney, R. N. and Andersen, O.S.: One antimicrobial peptide (gramicidin S) can affect the function of another (gramicidin A or alamethicin) via effects on the phospholipid bilayer. Biophys. J. 94 6–7, (2008).
Ashrafuzzaman, M., Andersen, O.S. and McElhaney, R. N.: The antimicrobial peptide gramicidin S permeabilizes phospholipid bilayer membranes without forming discrete ion channels. Biochim. Biophys. Acta 1778, 2814–2822 (2008).
Ashrafuzzaman, Md., Lampson. M.A., Greathouse, D.V., Koeppe II, R.E., Andersen, O.S.: Manipulating lipid bilayer material properties by biologically active amphipathic molecules. J. Phys.: Condens. Mat. 18, S1235–1255 (2006).
Ashrafuzzaman, Md., Duszyk, M. and Tuszynski, J. A.: Chemotherapy drugs Thiocolchicoside and Taxol Permeabilize Lipid Bilayer Membranes by Forming Ion Pores. J. of Physics: Conf. Series 329, 012029, 1–16 (2011).
Ashrafuzzaman, Md., Tseng, C.-Y., Duszyk, M. and Tuszynski, J. A.: Chemotherapy drugs form ion pores in membranes due to physical interactions with lipids. submitted (2011).
Benz, R., Fröhlich, O., Läuger, P., and Montal, M.: Electrical capacity of black lipid films and of lipid bilayers made from monolayers. Biochim. Biophys. Acta 394, 323–334, (1975).
Berneche, S. and Roux, B.: Molecular Dynamics of the KcsA \(K^+\) Channel in a Bilayer Membrane. Biophys. J. 78, 2900–2917 (2000).
Bezrukov, S.M., Rand, R.P., Vodyanoy, I. and Parsegian, V. A.: Lipid packing stress and polypeptide aggregation : alamethicin channel probed by proton titration of lipidcharge. Faraday Discuss. 111, 173–183 (1998).
Boheim, G.: Statistical analysis of alamethicin channels in black lipid membranes. J. Mem. Biol. 19, 277–303 (1974).
Brown, M.F.: Modulation of rhodopsin function by properties of the membrane bilayer. Chem. Phys. Lipids 73, 159–180 (1994).
Dan, N. and Safran, S.A.: Effect of Lipid Characteristics on the structure of Trans-membrane proteins. Biophys. J. 75, 1410–1414 (1998).
Daune, M.: Molecular Biophysics: structures in Motion, Oxford University Press, Oxford (1999).
de Meyer, F. and Smit, B. Comment on “cluster formation of trans-membrane proteins due to hydrophobic mismatching”. Phys. Rev. Lett. 102, 219801 (2009).
Duan, Y., Wu, C., Chowdhury, S., Lee, M.C., Xiong, G., Zhang, W., Yang, R., Cieplak, P., Luo, R., Lee, T.: A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations. J. Comput. Chem. 24, 1999–2012 (2003).
Durkin, J. T., Koeppe, R.E. II and Andersen, O.S.: Energetics of gramicidin hybrid channel formation as a test for structural equivalence *1: Side-chain substitutions in the native sequence. J. Mol. Biol. 211, 221–234 (1990).
Durkin, J. T., Providence, L. L., Koeppe, R.E. II and Andersen, O.S.: Energetics of heterodimer formation among gramicidin Analogues with an \(NH_2\)-terminal addition or deletion consequences of missing a residue at the join in the channel. J. Mol. Biol. 231, 1102–1121 (1993).
Evans, E. A. and Hochmuth, R.M.: Curr. Top. Membr. Transp. 10, 1 (1978).
Evans, E., Rawicz, W. and Hofmann, A.F.: In Bile Acids in Gastroenterology Basic and Clinical Advances, edited by A.F. Hofmann, G. Paumgartner and A. Stiehl (Dordrecht: Kluwer-Academic), p 59 (1995).
Finkelstein, A.: Water and nonelectrolyte permeability of lipid bilayer membranes. J. Gen. Physiol. 68, 127–135 (1976).
Goulian, M., Mesquita, O.N., Fygenson, D.K., Nielsen, C., and Andersen., O.S.: Gramicidin channel kinetics under tension. Biophys. J. 74, 328–337 (1998).
Greathouse, D. V., Koeppe, R.E. II, Providence, L. L., Shobana, S. and Andersen, O.S.: Design and characterization of gramicidin channels. Meth. Enzymol. 294, 525–550 (1999).
Grønbech-Jensen, N., Mashl, R. J., Bruinsma, R. F., and Gelbart, W. M.: Counterion-induced attraction between rigid polyelectrolytes. Phys. Rev. Lett. 78, 2477–2480 (1997).
Gruner, S. M.: In Biologically Inspired Physics, edited by L. Peliti (New York: Plenum), p 127 (1991).
Gruner, S. M.: Intrinsic curvature hypothesis for biomembrane lipid composition: a role for nonbilayer lipids. Proc. Natl. Acad. Sci. 82, 3665–69 (1985).
Harper, P.E., Mannock, D.A., Lewis, R.N.A.H., McElhaney, R.N. and Gruner, S.M.: X-Ray diffraction structures of some phosphatidylethanolamine lamellar and inverted hexagonal phases. Biophys. J. 81, 2693–2706 (2001).
He, K., Ludtke, S. J., Huang, H. W. and Worcester, D. L.: Antimicrobial peptide pores in membranes detected by neutron in-plane scattering. Biochemistry 34, 15614–15618 (1995).
Helfrich, W.: Elastic properties of lipidbilayers: theory and possible experiments. Z. Naturforsch. 28C, 693–703 (1973).
Helfrich, P. and Jakobsson, E.: Calculation of deformation energies and conformations in lipidmembranes containing gramicidin channels. Biophys. J. 57, 1075–1084 (1990).
Heyer, R. J., Muller, R. U. and Finkelstein, A.: Inactivation of monazomycin-induced voltage-dependent conductance in thin lipidmembranes. I. Inactivation produced by long chain quaternary ammonium ions. J. Gen. Physiol. 67, 703–729 (1976).
Huang, H. W.: Deformation free energy of bilayer membrane and its effect on gramicidin channel lifetime. Biophys. J. 50, 1061–1071 (1986).
Hwang, T. C., Koeppe, R.E. II and Andersen, O.S.: Genistein can modulate channel function by a phosphorylation-independent mechanism: importance of hydrophobic mismatch and bilayer mechanics. Biochemistry 42, 13646–58 (2003).
Israelachvili, J.N.: Refinement of the fluid-mosaicmodel of membrane structure. Biochim. Biophys. Acta 469, 221–225 (1977).
Jakalian, A., Bush, B.L., Jack, D.B., Bayly, C.I.: Fast, efficient generation of high-quality atomic charges. AM1-BCC model: I. Method. J. Comput. Chem. 21, 132–146 (2000).
Jakalian, A., Jack, D.B., Bayly, C.I.: Fast, efficient generation of high-quality atomic charges. AM1-BCC model: II. Parameterization and Validation. J. Comput. Chem. 23, 1623–1641 (2002).
Katsaras, J., Prosser, R. S., Stinson, R. H. and Davis, J. H.: Constant helical pitch of the gramicidin channel in phospholipid bilayers. Biophys. J. 61, 827–830 (1992).
Keller, S. L., Bezrukov, S. M., Gruner, S. M., Tate, M. W., Vodyanoy, I. and Parsegian, V. A.: Probability of alamethicin conductance states varies with nonlamellar tendency of bilayer phospholipids. Biophys. J. 65, 23–27 (1993).
Ketchem, R. R., Roux, B. and Cross, T. A.: High-resolution polypeptide structure in a lamellar phase lipid environment from solid state NMR derived orientational constraints. Structure 5, 1655–1669 (1997).
Killian, J. A. and Nyholm, T. K.: Peptides in lipidbilayers: the power of simple models. Curr. Opin. Struct. Biol. 16, 473–479 (2006).
Killian, J. A., Salemink, I., de Planque, M. R., Lindblom, G., Koeppe, R.E. II, Greathouse, D. V.: Induction of nonbilayer structures in diacylphosphatidylcholine model membranes by trans-membrane alpha-helical peptides: importance of hydrophobic mismatch and proposed role of tryptophans. Biochemistry 35, 1037–1045 (1996).
Kirk, G. L. and Gruner, S. M.: Lyotropic effects of alkanes and headgroup composition on the \(l_{\alpha }\) -\(H_{II}\) lipid liquid crystal phase transition : hydrocarbon packing versus intrinsic curvature. J. Phys. 46, 761–769 (1985).
Koeppe, R.E. II, Providence, L. L., Greathouse, D. V., Heitz, F., Trudelle, Y., Purdie, N. and Andersen, O.S.: On the helix sense of gramicidin A single channel. Proteins Struct., Funct., Genet. 12, 49–62 (1992).
Latorre, M. and Alvarez, O.: Voltage-dependent channels in planar lipidbilayer membranes. Physiol. Rev. 61, 77–150 (1981).
Lee, M. T., Hung, W. C., Chen, F. Y. and Huang, H. W.: Many-Body Effect of Antimicrobial Peptides: On the Correlation Between Lipid’s Spontaneous Curvature and Pore Formation. Biophys. J. 89, 4006–4016 (2005).
Lee, M.C., Duan, Y.: Distinguish protein decoys by using a scoring function based on a new Amber force field, short molecular dynamics simulations, and the generalized Born solvent model. Proteins 55, 620–634 (2004).
Lewis, B.A. and Engelman, D.M.: Lipidbilayer thickness varies linearly with acyl chain length in fluid phosphatidylcholine vesicles. J. Mol. Biol. 166, 211–217 (1983).
Lundbæk, J. A., Birn, P. H. A. J., Søgaard, R., Nielsen, C., Girshman, J., Bruno, M. J., Tape, S. E., Egebjerg, J., Greathouse, D. V., Mattice, G. L., Koeppe, R.E. II and Andersen, O.S.: Regulation of sodium channel function by bilayer elasticity. The importance of hydrophobic coupling. Effects of micelle-forming amphiphiles and cholesterol. J. Gen. Physiol. 123, 599–621 (2004).
Lundbæk, J. A.: Lipid Bilayer - mediated Regulation of Ion Channel Function by Amphiphilic drugs. J. of Gen. Physiol. 131, 421–429 (2008).
Lundbæk, J.A. and Andersen, O.S.: Spring constants for channel-induced lipidbilayer deformations. Estimates using gramicidin channels. Biophys. J. 76, 889–895 (1999).
Ly, H. V. and Longo, M. L.: The Influence of Short-Chain Alcohols on Interfacial Tension, Mechanical Properties, Area/Molecule, and Permeability of fluid Lipid Bilayers. Biophys. J. 87, 1013–1033 (2004).
McLaughlin, S.: Electrostatic Potentials at Membrane-Solution Interfaces. Curr. Top. Membr. Transp. 9, 71–98 (1977).
Mengistu, D. H. and May, S.: Debye-Hückel theory of mixed charged-zwitterionic lipid layers. Eur. Phys. J. E 26, 251–260 (2008).
Miloshevsky, G. V. and Jordan, P. C.: Gating gramicidin channels in lipidbilayers: reaction coordinates and the mechanism of dissociation. Biophys. J. 86, 92–104 (2004).
Mobashery, N., Nielsen, C. and Andersen, O.S.: The conformational preference of gramicidin channels is a function of lipidbilayer thickness. FEBS Lett. 412, 15–20 (1997).
Mtheitsen, O. G. and Bloom, M.: Mattress model of lipid-protein interactions in membranes. Biophys. J. 46, 141–153 (1984).
Mtheitsen, O. G. and Andersen, O.S.: In Biol. Skr. Dan. Vid. (Selsk Munksgaard, Copenhagen: B) (1998).
Muller, R. U. and Finkelstein, A.: The Effect of Surface Charge on the Voltage-Dependent Conductance Induced in Thin Lipid Membranes by Monazomycin. J. Gen. Physiol. 60, 285–306 (1972).
Nielsen, C., Goulian, M. and Andersen, O.S.: Biophys, Energetics of inclusion-induced bilayer deformations, Biophys. J. 74, 1966–1983 (1998).
Nielsen, C. and Andersen, O.S.: Inclusion-induced bilayer deformations: effects of monolayer equilibrium curvature. Biophys. J. 79, 2583–2604 (2000).
O’Connell, A. M., Koeppe, R.E. II and Andersen, O.S.: Kinetics of gramicidin channel formation in lipidbilayers: trans-membrane monomer association. Science 250, 1256–1259 (1990).
Odijk, T.: Polyelectrolytes near the rod limit. J. Plym. Sci., Polym. Phys. Ed. 15, 477–483 (1977).
Orbach, E. and Finkelstein, A.: The nonelectrolyte permeability of planar lipidbilayer membranes. J. Gen. Physiol. 75, 427–436 (1980).
Parsegian, A.: Energy of an Ion crossing a low dielectric membrane: solutions to fthe relevant electrostatic problems. Nature 221, 844–846 (1969).
Perozo, E., Cortes, D.M. and Cuello, L.G.: Structural Rearrangements Underlying \(K^+\)- Channel Activation Gating. Science 285, 73–78 (1999).
Perozo, E., Cortes, D. M., Sompornpisut, P., Kloda, A. and Martinac, B.: Open channel structure of MscL and the gating mechanism of mechanosensitive channels. Nature 418, 942–948 (2002).
Ring, A.: Gramicidin channel-induced lipidmembrane deformation energy: influence of chain length and boundary conditions. Biochim. Biophys. Acta 1278, 147–159 (1996).
Rostovtseva, T. K., Aguilella, V. M., Vodayanoy, I., Bezrukov, S. M. and Parsegian, A.: Membrane surface-charge titration probed by gramicidin A channel conductance. Biophys. J. 75, 1783–1792 (1998).
Sackmann, E.: In Biological Membranes. Chapman, D. (ed.) (London: Academic), p 105 (1984).
Santore, M. M., Discher, D. E., Won, Y-Y., Bates, F. S. and Hammer, D. A.: Effect of Surfactant on Unilamellar Polymeric Vesicles: Altered Membrane Properties and Stability in the Limit of Weak Surfactant Partitioning. Langmuir 18, 7299–7308 (2002).
Sawyer, D. B., Koeppe, R.E. II and Andersen, O.S.: Induction of conductance heterogeneity in gramicidin channels. Biochemistry 28, 6571–6583 (1989).
Schatzberg, P. J.: Polymer Sci. Part C 10, 87–92 (1965).
Seddon, J. M.: Structure of the inverted hexagonal (\(H_{II}\)) phase, and non-lamellar phase transitions of lipids. Biochim. Biophys. Acta 1031, 1–69 (1990).
Simon, S.A., McIntosh, T.J. and Latorre, R.: Influence of cholesterol on water permeation into bilayers. Science 216, 65–67 (1982).
Singer, S.J. and Nicolson, G.L.: The fluid mosaic model of the structure of cell membranes. Science 175, 720–731 (1972).
Szabo, G., Eisenman, G. and Ciani, S.: The effects of the macrotetralide actin antibiotics on the electrical properties of phospholipid bilayer membranes. J. Membr. Biol. 1, 346 (1969).
Tate, M. W., Eikenberry, E. F., Turner, D. C., Shyamsunder, E. and Gruner, S. M.: Non bilayer phases of membrane lipids. Chem. Phys. Lipids 57, 147–164 (1991).
Teh, C.K., Tuszynski, J. and Weisman, F.L.: The decay of carbon luminescence in liquid-encapsulated czochralski-grown semi-insulating GaAs. J. Mater. Res. 5, 365–371 (1990).
Townsley, L. E., Tucker, W. A., Sham, S. and Hinton, J. F.: Structures of gramicidins A, B, and C incorporated into sodium dodecyl sulfate micelles. Biochemistry 40, 11676–11686 (2001).
Toyoshima, C. and Mizutani, T.: Crystal structure of the calcium pump with a bound ATP analogue. Nature 430, 529–535 (2004).
Unwin, P.N.T. and Ennis, P. D.: Two configurations of a channel-forming membrane protein. Nature 307, 609–613 (1984).
Wallace, B. A., Veatch, W. R. and Blout, E. R.: Conformation of gramicidin A in phospholipid vesicles: circular dichroism studies of effects of ion binding, chemical modification, and lipid structure. Biochemistry 20, 5754–5760 (1981).
Walter, A. and Gutknecht, J.: Monocarboxylic acid permeation through lipidbilayer membranes. J. Membrane Biol. 77, 255–264 (1984).
Woolf, T.B. and Roux, B.: Molecular dynamics simulation of the gramicidin channel in a phospholipid bilayer. Proc. Natl. Acad. Sci. USA 91, 11631–11635 (1994).
Wu, Y., He, K., Ludtke, S. J. and Huang, H. W.: X-ray diffraction study of lipidbilayer membranes interacting with amphiphilic helical peptides: diphytanoyl phosphatidylcholine with alamethicin at low concentrations. Biophys. J. 68, 2361–2369 (1995).
Zhou, Y. and Raphael, R. M.: Effect of Salicylate on the Elasticity, Bending Stiffness, and Strength of SOPC Membranes. Biophys. J. 89, 1789–1801 (2005).
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
Copyright information
© 2012 Springer-Verlag Berlin Heidelberg
About this chapter
Cite this chapter
Ashrafuzzaman, M., Tuszynski, J. (2012). Lipid Bilayer-Membrane Protein Coupling. In: Membrane Biophysics. Biological and Medical Physics, Biomedical Engineering. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-16105-6_5
Download citation
DOI: https://doi.org/10.1007/978-3-642-16105-6_5
Published:
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-642-16104-9
Online ISBN: 978-3-642-16105-6
eBook Packages: Physics and AstronomyPhysics and Astronomy (R0)