Definition of the Subject
Much work over the past half‐century in developmental and evolutionary biology has focused on a subset of an organism's components, itsgenes . The hierarchical regulatory relationships among genes have been a major emphasis in studies indevelopment, while the variation of genes has played a corresponding role in evolutionary studies. In the past decade, however, investigators haveincreasingly considered the part played by physical and dynamical properties of cells and tissues, and their molecular components, in producing biologicalcharacteristics over the course of ontogeny and phylogeny. Living cells and tissues encompass numerous interpenetrating multicomponent systems in whichdynamical interactions among intracellular gene products, metabolites, ions, etc., and interactions between cells, directly via theiradhesive surfaces, or indirectly via secreted extracellular matrix (ECM) molecules or diffusible signaling...
Abbreviations
- Differential adhesion:
-
The capacity of cells to adhere to each other in a cell type‐dependent manner. The strength of adhesion between two cells of type A typically differs from that between cells of type B. This may be due to differences either in the number or type of cell adhesion molecules.
- Differential gene expression:
-
The main regulatory basis of cell differentiation . Cells of different type in a given organism carry the same set of genes (the genome) but vary in which of these genes are active, that is, expressed.
- Biochemical oscillation:
-
The variation in the concentration of a given molecule in principle either in space or time, although typically the term is reserved for the latter.
- Reaction-diffusion mechanism:
-
A conceptual framework for describing spatiotemporal pattern formation in a system of several interacting and diffusing chemical species.
- Canalization:
-
An evolved property of developmental pathways that permits the robust generation of a phenotype in the face of perturbations. The perturbations can be those internal to the organism, in the form of gene mutation or developmental noise, or external to it, in the form of environmental variability.
Bibliography
Primary Literature
Artavanis‐Tsakonas S, Rand MD, Lake RJ (1999) Notch signaling: cell fate control and signal integration in development. Science 284:770–6
Aulehla A, Wehrle C, Brand-Saberi B, Kemler R, Gossler A, Kanzler B, Herrmann BG (2003) Wnt3a plays a major role in the segmentation clock controlling somitogenesis. Dev Cell 4:395–406
Bateson W (1894) Materials for the study of variation. Macmillan, London
Boissonade J, Dulos E, DeKepper P (1994) Turing patterns: From myth to reality. In: Kapral R, Showalter K (eds) Chemical waves and patterns. Boston, Kluwer
Borisuk MT, Tyson JJ (1998) Bifurcation analysis of a model of mitotic control in frog eggs. J Theor Biol 195:69–85
Brown SJ, Patel NH, Denell RE (1994) Embryonic expression of the single Tribolium engrailed homolog. Dev Genet 15:7–18
Carroll SB, Grenier JK, Weatherbee SD (2001) From DNA to diversity: molecular genetics and the evolution of animal design. Blackwell Science, Malden
Choe CP, Brown SJ (2007) Evolutionary flexibility of pair-rule patterning revealed by functional analysis of secondary pair-rule genes, paired and sloppy‐paired in the short-germ insect, Tribolium castaneum. Dev Biol 302:281–94
Christen B, Slack J (1999) Spatial response to fibroblast growth factor signalling in Xenopus embryos. Development 126:119–125
Cinquin O, Demongeot J (2005) High‐dimensional switches and the modelling of cellular differentiation. J Theor Biol 233:391–411
Clements D, Friday RV, Woodland HR (1999) Mode of action of VegT in mesoderm and endoderm formation. Development 126:4903–11
Conway Morris S (2006) Darwin's dilemma: The realities of the cambrian ‘explosion’. Philos Trans Royal Soc Lond B Biol Sci 361:1069–83
Cooke J, Zeeman EC (1976) A clock and wavefront model for control of the number of repeated structures during animal morphogenesis. J Theor Biol 58:455–76
Davidson EH (2006) The regulatory genome: gene regulatory networks in development and evolution. Elsevier Academic Press, Amsterdam
Dawes R, Dawson I, Falciani F et al (1994) Dax, a locust Hox gene related to fushi‐tarazu but showing no pair-rule expression. Development 120:1561–72
de Gennes PG (1992) Soft matter. Science 256:495–497
DeMarais AA, Moon RT (1992) The armadillo homologs beta‐catenin and plakoglobin are differentially expressed during early development of Xenopus laevis. Dev Biol 153:337–46
Dubrulle J, McGrew MJ, Pourquié O (2001) FGF signaling controls somite boundary position and regulates segmentation clock control of spatiotemporal Hox gene activation. Cell 106:219–32
Duguay D, Foty RA, Steinberg MS (2003) Cadherin‐mediated cell adhesion and tissue segregation: qualitative and quantitative determinants. Dev Biol 253:309–23
Elowitz MB, Leibler S (2000) A synthetic oscillatory network of transcriptional regulators. Nature 403:335–8
Forgacs G, Newman SA (2005) Biological physics of the developing embryo. Cambridge University Press, Cambridge
Foty RA, Pfleger CM, Forgacs G, Steinberg MS (1996) Surface tensions of embryonic tissues predict their mutual envelopment behavior. Development 122:1611–1620
Frasch M, Levine M (1987) Complementary patterns of even‐skipped and fushi tarazu expression involve their differential regulation by a common set of segmentation genes in Drosophila. Genes Dev 1:981–95
Giancotti FG, Ruoslahti E (1999) Integrin signaling. Science 285:1028–32
Gilbert SF (2006) Developmental biology, 8th edn. Sinauer Associates, Sunderland
Giudicelli F, Ozbudak EM, Wright GJ, Lewis J (2007) Setting the tempo in development: an investigation of the zebrafish somite clock mechanism. PLoS Biol 5:e150
Goodwin BC (1963) Temporal organization in cells; a dynamic theory of cellular control processes. Academic Press, London
Green J (2002) Morphogen gradients, positional information, and Xenopus: Interplay of theory and experiment. Dev Dyn 225:392–408
Gurdon JB (1988) A community effect in animal development. Nature 336:772–4
Harding K, Hoey T, Warrior R et al (1989) Autoregulatory and gap gene response elements of the even‐skipped promoter of Drosophila. EMBO J 8:1205–12
Harland R, Gerhart J (1997) Formation and function of Spemann's organizer. Annu Rev Cell Dev Biol 13:611–67
Holland PW (1999) Gene duplication: past, present and future. Semin Cell Dev Biol 10:541–7
Holley SA, Geisler R, Nusslein‐Volhard C (2000) Control of her1 expression during zebrafish somitogenesis by a Delta‐dependent oscillator and an independent wave-front activity. Genes Dev 14:1678–1690
Holley SA, Julich D, Rauch GJ et al (2002) her1 and the notch pathway function within the oscillator mechanism that regulates zebrafish somitogenesis. Development 129:1175–83
Howard K, Ingham P (1986) Regulatory interactions between the segmentation genes fushi tarazu, hairy, and engrailed in the Drosophila blastoderm. Cell 44:949–57
Ingham PW (1988) The molecular genetics of embryonic pattern formation in Drosophila. Nature. 335:25–34
Irvine KD, Wieschaus E (1994) Cell intercalation during Drosophila germband extension and its regulation by pair-rule segmentation genes. Development 120:827–41
Ish‐Horowicz D, Pinchin SM, Ingham PW et al (1989) Autocatalytic ftz activation and instability induced by ectopic ftz expression. Cell 57:223–232
Israelachvili JN (1991) Intermolecular and surface forces. Academic Press, London
Itow T (1986) Inhibitors of DNA synthesis change the differentiation of body segments and increase the segment number in horseshoe crab embryos. Roux's Arch Dev Biol 195:323–333
Jablonka E, Lamb MJ (1995) Epigenetic inheritance and evolution. Oxford University Press, Oxford
Kaneko K (2003) Organization through intra-inter dynamics. In: Müller GB, Newman SA (eds) Origination of Organismal Form: Beyond the Gene in Developmental and Evolutionary Biology. MIT Press, Cambridge, pp 195–220
Kaneko K (2006) Life: an introduction to complex systems biology. Springer, New York
Kaneko K, Yomo T (1994) Cell division, differentiation and dynamic clustering. Physica D 75:89–102
Karr TL, Weir MP, Ali Z et al (1989) Patterns of engrailed protein in early Drosophila embryos. Development 105:605–612
Kauffman SA (1969) Metabolic stability and epigenesis in randomly constructed genetic nets. J Theor Biol 22:437–67
Keller AD (1995) Model genetic circuits encoding autoregulatory transcription factors. J Theor Biol 172:169–85
Kerszberg M, Wolpert L (1998) Mechanisms for positional signaling by morphogen transport: a theoretical study. J Theor Biol 191:103–14
Lander AD (2007) Morpheus unbound: reimagining the morphogen gradient. Cell 128:245–56
Lawrence PA (1992) The making of a fly: the genetics of animal design. Blackwell Scientific Publications, Oxford
Lengyel I, Epstein IR (1992) A chemical approach to designing Turing patterns in reaction‐diffusion systems. Proc Natl Acad Sci USA 89:3977–9
Lewis J (2003) Autoinhibition with transcriptional delay: a simple mechanism for the zebrafish somitogenesis oscillator. Curr Biol 13:1398–408
Liu PZ, Kaufman TC (2005) Short and long germ segmentation: unanswered questions in the evolution of a developmental mode. Evol Dev 7:629–46
Mangan S, Zaslaver A, Alon U (2003) The coherent feedforward loop serves as a sign‐sensitive delay element in transcription networks. J Mol Biol 334:197–204
McDowell N, Gurdon JB, Grainger DJ (2001) Formation of a functional morphogen gradient by a passive process in tissue from the early Xenopus embryo. Int J Dev Biol 45 (1 Spec No):199–207
Meinhardt H (2001) Organizer and axes formation as a self‐organizing process. Int J Dev Biol 45(1 Spec No):177–88
Mikhailov AS (1990) Foundations of synergetics I. Springer, Berlin
Monk NA (2003) Oscillatory expression of Hes1, p53, and NF‐kappaB driven by transcriptional time delays. Curr Biol 13:1409–13
Morisco C, Seta K, Hardt SE et al (2001) Glycogen synthase kinase 3beta regulates GATA4 in cardiac myocytes. J Biol Chem 276:28586–97
Newman SA (1993) Is segmentation generic? BioEssays 15:277–283
Newman SA (1994) Generic physical mechanisms of tissue morphogenesis: A common basis for development and evolution. J Evol Bio 7:467–488
Newman SA (1998) Epithelial morphogenesis: a physico-evolutionary interpretation. In: Chuong C-M (ed) Molecular Basis of Epithelial Appendage Morphogenesis. Landes, Austin, pp 341–358
Newman SA (2003) From physics to development: the evolution of morphogenetic mechanisms. In: Müller GB, Newman SA (eds) Origination of Organismal Form: Beyond the Gene in Developmental and Evolutionary Biology. MIT Press, Cambridge
Newman SA (2006) The developmental‐genetic toolkit and the molecular homology‐analogy paradox. Biol Theory 1:12–16
Newman SA (2007) William Bateson's physicalist ideas. In: Laubichler M, Maienschein J (eds) From Embryology to Evo-Devo: a History of Evolutionary Development. Cambridge, MA, MIT Press, pp 83–107
Newman SA, Bhat R (2008) Dynamical patterning modules: physico-genetic determinants of morphological development and evolution. Phys Biol 5:15008
Newman SA, Forgacs G, Müller GB (2006) Before programs: The physical origination of multicellular forms. Int J Dev Biol 50:289–99
Newman SA, Müller GB (2000) Epigenetic mechanisms of character origination. J Exp Zool 288:304–17
Nieuwkoop PD (1969) The formation of mesoderm in Urodelean amphibians. I. Induction by the endoderm. Wilhelm Roux' Arch Entw Mech Org 162:341–373
Nowak MA, Boerlijst MC, Cooke J, Smith JM (1997) Evolution of genetic redundancy. Nature 388:167–71
Oates AC, Ho RK (2002) Hairy/E(spl)-related (Her) genes are central components of the segmentation oscillator and display redundancy with the Delta/Notch signaling pathway in the formation of anterior segmental boundaries in the zebrafish. Development 129:2929–46
Palmeirim I, Henrique D, Ish‐Horowicz D et al (1997) Avian hairy gene expression identifies a molecular clock linked to vertebrate segmentation and somitogenesis. Cell 91:639–48
Patel NH (1994) Developmental evolution: insights from studies of insect segmentation. Science 266:581–590
Patel NH, Ball EE, Goodman CS (1992) Changing role of even-skipped during the evolution of insect pattern formation. Nature 357:339–342
Patel NH, Kornberg TB, Goodman CS (1989) Expression of engrailed during segmentation in grasshopper and crayfish. Development 107:201–212
Pennisi E (2003) A low number wins the GeneSweep pool. Science 300:1484
Phillips HM (1969) Equilibrium measurements of embryonic cell adhesiveness: Physical formulation and testing of the differential adhesion hypothesis. Ph D thesis. Johns Hopkins University
Pourquié O (2003) The segmentation clock: converting embryonic time into spatial pattern. Science 301:328–30
Primmett DR, Norris WE, Carlson GJ et al (1989) Periodic segmental anomalies induced by heat shock in the chick embryo are associated with the cell cycle. Development 105:119–30
Reinitz J, Mjolsness E, Sharp DH (1995) Model for cooperative control of positional information in Drosophila by bicoid and maternal hunchback. J Exp Zool 271:47–56
Rutherford SL, Lindquist S (1998) Hsp90 as a capacitor for morphological evolution. Nature 396:336–42
Sakuma R, Ohnishi Yi Y, Meno C et al (2002) Inhibition of Nodal signalling by Lefty mediated through interaction with common receptors and efficient diffusion. Genes Cells 7:401–12
Salazar‐Ciudad I, Garcia‐Fernandez J, Sole RV (2000) Gene networks capable of pattern formation: from induction to reaction‐diffusion. J Theor Biol 205:587–603
Salazar‐Ciudad I, Newman SA, Solé R (2001) Phenotypic and dynamical transitions in model genetic networks. I. Emergence of patterns and genotype‐phenotype relationships. Evol Dev 3:84–94
Salazar‐Ciudad I, Solé R, Newman SA (2001) Phenotypic and dynamical transitions in model genetic networks. II. Application to the evolution of segmentation mechanisms. Evol Dev 3:95–103
Schmalhausen II (1949) Factors of evolution. Blakiston, Philadelphia
Schulte‐Merker S, Smith JC (1995) Mesoderm formation in response to Brachyury requires FGF signalling. Curr Biol 5:62–7
Small S, Blair A, Levine M (1992) Regulation of even‐skipped stripe 2 in the Drosophila embryo. EMBO J 11:4047–4057
Small S, Kraut R, Hoey T et al (1991) Transcriptional regulation of a pair-rule stripe in Drosophila. Genes Dev 5:827–39
Solnica‐Krezel L (2003) Vertebrate development: taming the nodal waves. Curr Biol 13:R7–9
Spemann H, Mangold H (1924) Über Induktion von Embryonalanlagen durch Implantation artfremder Organisatoren. Wilhelm Roux' Arch Entw Mech Org 100:599–638
St Johnston D, Nusslein‐Volhard C (1992) The origin of pattern and polarity in the Drosophila embryo. Cell 68:201–19
Steinberg MS (1963) Reconstruction of tissues by dissociated cells. Some morphogenetic tissue movements and the sorting out of embryonic cells may have a common explanation. Science 141:401–8
Stern CD, Bellairs R (1984) Mitotic activity during somite segmentation in the early chick embryo. Anat Embryol (Berl) 169:97–102
Stollewerk A, Schoppmeier M, Damen WG (2003) Involvement of Notch and Delta genes in spider segmentation. Nature 423:863–5
Strogatz SH (1994) Nonlinear dynamics and chaos: with applications to physics, biology, chemistry, and engineering. Perseus Pub, Cambridge
Sun B, Bush S, Collins‐Racie L et al (1999) derriere: a TGF-beta family member required for posterior development in Xenopus. Development 126:1467–1482
Tsarfaty I, Resau JH, Rulong S, Keydar I, Faletto DL, Vande Woude GF (1992) The met proto‐oncogene receptor and lumen formation. Science 257:1258–61
Turing AM (1952) The chemical basis of morphogenesis. Phil Trans Royal Soc Lond B 237:37–72
Van Obberghen‐Schilling E, Roche NS, Flanders KC et al (1988) Transforming growth factor beta-1 positively regulates its own expression in normal and transformed cells. J Biol Chem 263:7741–7746
Waddington CH (1957) The Strategy of the Genes. Allen and Unwin, London
Winfree AT (1980) The geometry of biological time. Springer, New York
Wilkins AS (1997) Canalization: a molecular genetic perspective. BioEssays 19:257–262
Wolpert L (2002) Principles of development. Oxford University Press, Oxford New York
Books and Reviews
Meinhardt H (1982) Models of biological pattern formation. Academic, New York
Müller GB, Newman SA (2003) Origination of organismal form: beyond the gene in developmental and evolutionary biology. MIT Press, Cambridge, pp 221–239
Newman SA, Comper WD (1990) ‘Generic’ physical mechanisms of morphogenesis and pattern formation. Development 110:1–18
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Newman, S.A., Forgacs, G. (2009). Biological Development and Evolution, Complexity and Self-organization in. In: Meyers, R. (eds) Encyclopedia of Complexity and Systems Science. Springer, New York, NY. https://doi.org/10.1007/978-0-387-30440-3_35
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