Skip to main content

Survival Prediction of Glioma Tumors Using Feature Selection and Linear Regression

  • Conference paper
  • First Online:
Intelligent Computing and Block Chain (FICC 2020)

Part of the book series: Communications in Computer and Information Science ((CCIS,volume 1385))

  • 1120 Accesses

Abstract

Early diagnosis of brain tumor is crucial for treatment planning. Quantitative analyses of segmentation can provide information for tumor survival prediction. The effectiveness of convolutional neural network (CNN) has been validated in medical image segmentation. In this study, we apply a widely-employed CNN namely UNet to automatically segment out glioma sub-regions, and then extract their volumes and surface areas. A sophisticated machine learning scheme, consisting of mutual information feature selection and multivariate linear regression, is then used to predict individual survival time. The proposed method achieves an accuracy of 0.475 on 369 training data based on leave-one-out cross-validation. Compared with using all features, using features obtained from the employed feature selection technology can enhance the survival prediction performance.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

Notes

  1. 1.

    https://github.com/MIC-DKFZ/nnUNet.

  2. 2.

    https://github.com/xf4j/brats18.

References

  1. Stupp, R., Mason, W.P., et al.: Radiotherapy plus concomitant and adjuvant temozolomide for glioblastoma. N. Engl. J. Med. 352(10), 987–996 (2005)

    Article  Google Scholar 

  2. Kumar, V., Gu, Y., Basu, S., Berglund, A., et al.: Radiomics: the process and the challenges. Magn. Reson. Imaging 30(9), 1234–1248 (2012)

    Article  Google Scholar 

  3. Bakas, S., et al.: Advancing the cancer genome atlas glioma MRI collections with expert segmentation labels and radiomic features. Sci. Data 4, 170117 (2017)

    Article  Google Scholar 

  4. Menze, B.H., et al.: The multimodal brain tumor image segmentation benchmark (BraTS). IEEE Trans. Med. Imaging 34(10), 1993–2024 (2015)

    Article  Google Scholar 

  5. Bakas S., Reyes M., Jakab A., et al.: Identifying the best machine learning algorithms for brain tumor segmentation, progression assessment, and overall survival prediction in the BRATS challenge. arXiv preprint arXiv:1811.02629 (2018)

  6. Ronneberger, O., Fischer, P., Brox, T.: U-net: Convolutional networks for biomedical image segmentation. In: Navab, N., Hornegger, J., Wells, W.M., Frangi, A.F. (eds.) MICCAI 2015. LNCS, vol. 9351, pp. 234–241. Springer, Cham (2015). https://doi.org/10.1007/978-3-319-24574-428

  7. Isensee, F., Jger, P. F., Kohl, S. A., et al.: Automated design of deep learning methods for biomedical image segmentation. arXiv preprint arXiv:1904.08128 (2020)

  8. Sun, L., Zhang, S., Luo, L.: Tumor segmentation and survival prediction in Glioma with deep learning. In: Crimi, A., Bakas, S., Kuijf, H., Keyvan, F., Reyes, M., van Walsum, T. (eds.) BrainLes 2018. LNCS, vol. 11384, pp. 83–93. Springer, Cham (2019). https://doi.org/10.1007/978-3-030-11726-9_8

    Chapter  Google Scholar 

  9. Feng, X., Tustison, J., Patel, H., et al.: Brain tumor segmentation using an ensemble of 3D U-nets and overall survival prediction using radiomic features. Front. Comput. Neurosci. 14, 25 (2020)

    Article  Google Scholar 

  10. Li, J., Cheng, K., Wang, S., et al.: Feature selection: a data perspective. ACM Comput. Surv. (CSUR) 50(6), 1–45 (2017)

    Article  Google Scholar 

  11. Kozachenko, L.F., Leonenko, N.N.: Sample estimate of the entropy of a random vector. Problemy Peredachi Informatsii 23(2), 9–16 (1987)

    MathSciNet  MATH  Google Scholar 

  12. Kraskov, A., Stögbauer, H., Grassberger, P.: Estimating mutual information. Phys. Rev. E 69(6), 066138 (2004)

    Article  MathSciNet  Google Scholar 

  13. Ross, B.C.: Mutual information between discrete and continuous data sets. PloS one 9(2), e87357 (2014)

    Article  Google Scholar 

  14. Pedregosa, F., Varoquaux, G., Gramfort, A., et al.: Scikit-learn: machine learning in Python. J. Mach. Learn. Res. 12, 2825–2830 (2011)

    MathSciNet  MATH  Google Scholar 

  15. Isensee, F., Kickingereder, P., Wick, W., Bendszus, M., Maier-Hein, K.H.: No new-net. In: Crimi, A., Bakas, S., Kuijf, H., Keyvan, F., Reyes, M., van Walsum, T. (eds.) BrainLes 2018. LNCS, vol. 11384, pp. 234–244. Springer, Cham (2019). https://doi.org/10.1007/978-3-030-11726-9_21

    Chapter  Google Scholar 

  16. Yang, H.-Y., Yang, J.: Automatic brain tumor segmentation with contour aware residual network and adversarial training. In: Crimi, A., Bakas, S., Kuijf, H., Keyvan, F., Reyes, M., van Walsum, T. (eds.) BrainLes 2018. LNCS, vol. 11384, pp. 267–278. Springer, Cham (2019). https://doi.org/10.1007/978-3-030-11726-9_24

    Chapter  Google Scholar 

  17. Gates, E., Pauloski, J.G., Schellingerhout, D., Fuentes, D.: Glioma segmentation and a simple accurate model for overall survival prediction. In: Crimi, A., Bakas, S., Kuijf, H., Keyvan, F., Reyes, M., van Walsum, T. (eds.) BrainLes 2018. LNCS, vol. 11384, pp. 476–484. Springer, Cham (2019). https://doi.org/10.1007/978-3-030-11726-9_42

    Chapter  Google Scholar 

Download references

Acknowledgement

This work was supported by the Shenzhen Basic Research Program (JCYJ20190809120205578), the National Key R&D Program of China (2017YFC0112404), and the National Natural Science Foundation of China (81501546).

Author information

Authors and Affiliations

Authors

Corresponding authors

Correspondence to Kai Wang or Xiaoying Tang .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2021 Springer Nature Singapore Pte Ltd.

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Wu, J., Zhang, Y., Huang, W., Lin, L., Wang, K., Tang, X. (2021). Survival Prediction of Glioma Tumors Using Feature Selection and Linear Regression. In: Gao, W., et al. Intelligent Computing and Block Chain. FICC 2020. Communications in Computer and Information Science, vol 1385. Springer, Singapore. https://doi.org/10.1007/978-981-16-1160-5_8

Download citation

  • DOI: https://doi.org/10.1007/978-981-16-1160-5_8

  • Published:

  • Publisher Name: Springer, Singapore

  • Print ISBN: 978-981-16-1159-9

  • Online ISBN: 978-981-16-1160-5

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics