Abstract
Many modern statistical settings feature the analysis of data that may arise from unknown generating processes, or processes for which the generative models are computationally infeasible to interact with. Conventional estimation and inference solution methods in such settings may be unwieldy or impossible to implement. The approximate Bayesian computation (ABC) approach is a potent method in such scenarios, since it does not require the knowledge of the underlying generative model in order to perform inference. Furthermore, when combined with sufficiently regular discrepancy measurements such as the energy statistic, ABC can be shown to have desirable asymptotic properties. We provide a concise introduction to the general ABC framework. To demonstrate the capabilities and usefulness of the ABC approach, we present the analyses of a number of artificial examples as well as one of a real-data example pertaining to circular statistics data.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Similar content being viewed by others
References
Agostinelli, C., Lund, U.: R package ‘circular’: Circular Statistics (2017)
Best, D.J., Fisher, N.I.: Efficient simulation of the von Mises distribution. J. R. Stat. Soc. C 28, 152–157 (1979)
Duong, T.: ks: kernel density estimation and kernel discriminant analysis for multivariate data in R. J. Stat. Softw. 21(7), 1–16 (2007)
Frazier, D.T., Martin, G.M., Robert, C.P., Rousseau, J.: Asymptotic properties of approximate Bayesian computation. Biometrika 3, 593–607 (2018)
Iverson, K.E.: A Programming Language. Wiley, Hoboken (1962)
Jiang, B., Wu, T.Y., Wong, W.H.: Approximate Bayesian computation with Kullback-Leibler divergence as data discrepancy. In: Proceedings of the 21st International Conference on Artificial Intelligence and Statistics (AISTATS) (2018)
Karabatsos, G., Leisen, F.: An approximate likelihood perspective on ABC methods. Stat. Surv. 12, 66–104 (2018)
Ley, C., Verdebout, T.: Modern Directional Statistics. CRC Press, Boca Raton (2017)
Marin, J.M., Pudlo, P., Robert, C.P., Ryder, R.J.: Approximate Bayesian computation methods. Stat. Comput. 22, 1167–1180 (2012)
Miller, J.W., Dunson, D.B.: Robust Bayesian inference via coarsening. J. Am. Stat. Assoc. 113, 340–356 (2018)
Nguyen, H.D., Arbel, J., Lu, H., Forbes, F.: Approximate Bayesian computation via the energy statistic. ArXiv arXiv:1905.05884 (2019)
Nguyen, H.D., McLachlan, G.J.: Progress on a conjecture regarding the triangular distribution. Commun. Stat. - Theory Methods 46, 11261011271 (2017)
Press, S.J.: Subjective and Objective Bayesian Statistics. Wiley, Hoboken (2003)
Pritchard, J.K., Seielstad, M.T., Perez-Lezaun, A., Feldman, M.W.: Population growth of human Y chromosomes: a study of Y chromosome microsatellites. Mol. Biol. Evol. 16, 1791–1798 (1999)
R Core Team: R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna (2019)
Robert, C.P.: The Bayesian Choice: From Decision-Theoretic Foundations to Computatoinal Implementation. Springer, New York (2007). https://doi.org/10.1007/0-387-71599-1
Robert, C.P., Casella, G.: Monte Carlo Statistical Methods. Springer, New York (1999). https://doi.org/10.1007/978-1-4757-3071-5
Sisson, S.A., Fan, Y., Beaumont, M.A. (eds.): Handbook of Approximate Bayesian Computation. CRC Press, Boca Raton (2019)
Spokoiny, V., Dickhaus, T.: Basics of Modern Mathematical Statistics. Springer, Berlin (2015). https://doi.org/10.1007/978-3-642-39909-1
Szekely, G.J., Rizzo, M.L.: Testing for equal distributions in high dimension. InterStat 5, 1–16 (2004)
Szekely, G.J., Rizzo, M.L.: Energy statistics: a class of statistics based on distances. J. Stat. Plan. Inference 143, 1249–1272 (2013)
Szekely, G.J., Rizzo, M.L.: The energy of data. Annu. Rev. Stat. Appl. 4, 447–479 (2017)
Tavare, S., Balding, D.J., Griffiths, R.C., Donnelly, P.: Inferring coalescence times from DNA sequence data. Genetics 145, 505–518 (1997)
Turkman, M.A.A., Paulino, C.D., Muller, P.: Computational Bayesian Statistics: An Introduction. Cambridge University Press, Cambridge (2019)
Acknowledgements
The author is supported by Australian Research Council grants DE170101134 and DP180101192.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2019 Springer Nature Singapore Pte Ltd.
About this paper
Cite this paper
Nguyen, H.D. (2019). An Introduction to Approximate Bayesian Computation. In: Nguyen, H. (eds) Statistics and Data Science. RSSDS 2019. Communications in Computer and Information Science, vol 1150. Springer, Singapore. https://doi.org/10.1007/978-981-15-1960-4_7
Download citation
DOI: https://doi.org/10.1007/978-981-15-1960-4_7
Published:
Publisher Name: Springer, Singapore
Print ISBN: 978-981-15-1959-8
Online ISBN: 978-981-15-1960-4
eBook Packages: Computer ScienceComputer Science (R0)