Abstract
The effects of selection on allele frequency at five genes with putative effect on shoot morphology were examined in two perennial ryegrass (Lolium perenne L.) populations undergoing recurrent selection. A synthetic C0 population was created by intercrossing five unrelated ryegrass genotypes within the EU FP5 project ‘GRASP’. Two rounds of selection (both positive and negative) for axillary tiller formation were performed, leading to selected populations C1 + and C1 −, respectively. The mean number of axillary tillers per plant was 2.18, 3.90 and 0.22 for C0, C1 + and C1 −, respectively. Five ryegrass genes putatively involved in the control of plant architecture and hormone response were SNP genotyped in all three populations. A test of selective neutrality (Waples’ test), which tests the hypothesis of genetic drift versus selection, was applied. This test indicated selection for the gene LpIAA1 in C1 −, where allele frequency changes could not be explained by genetic drift alone (p < 0.05). LpIAA1 belongs to a large family of genes, called Aux/IAA, which comprises genes that are auxin-regulated and were shown to control shoot morphology in Arabidopsis and rice.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Brazauskas G, Pašakinskienė I, Asp T, Lübberstedt T (2010) Nucleotide diversity and linkage disequilibrium in five Lolium perenne genes with putative role in shoot morphology. Plant Sci 179:194–201. doi:10.1016/j.plantsci.2010.04.016
Charlesworth B (2009) Effective population size and patterns of molecular evolution and variation. Nat Rev Genet 10:195–205. doi:10.1038/nrg2526
Coque M, Gallais A (2006) Genomic regions involved in response to grain yield selection at high and low nitrogen fertilization in maize. Theor Appl Genet 112:1205–1220. doi:10.1007/s00122-006-0222-5
Falke KC, Flachenecker C, Melchinger AE, Piepho HP, Maurer HP, Frish M (2007) Temporal changes in allele frequencies in two European F2 flint maize populations under modified recurrent full-sib selection. Theor Appl Genet 117:765–776. doi:10.1007/s00122-006-0443-7
Frei U, Wollenweber B, Lübberstedt T (2009) „PolyMin“: Software for identification of the minimum number of polymorphisms required for haplotype and genotype differentiation. BMC Bioinformatics 10:176. doi:10.1186/1471-2105-10-176
Guzman PS, Lamkey KR (1999) Predicted gains from recurrent selection in the BS11 maize population. Maydica 44:93–99
Jensen LB, Andersen JR, Frei U, Xing Y, Taylor C, Holm PB, Lübberstedt T (2005) QTL mapping of vernalization response in perennial ryegrass (Lolium perenne L.) reveals co-location with an orthologue of wheat VRN1. Theor Appl Genet 110:527–536. doi:10.1007/s00122-004-1865-8
Jung GA, Van Wijk AJP, Hunt WF, Watson CE (1996) Ryegrasses. In: Moser LE, Buxton DR, Casler MD (eds) Cool-Season Forage Grasses. Madison, Wisconsin
Labate JA, Lamkey KR, Lee M, Woodman WL (1999) Temporal changes in allele frequencies in two reciprocally selected maize populations. Theor Appl Genet 99:1166–1178. doi:10.1007/s001220051321
Langer RHM (1979) How grasses grow. Edward Arnold Publishers Limited, London
Pašakinskienė I (2005) Creeping stem and barren inflorescence: a new mutation in Lolium. perenne ‘VIROIZ’. In: Zwierzykowski Z, Kosmala S (eds) Recent advances in genetics and breeding of the grasses. Institute of Plant Genetics, Poznan. 209–213
Pinto LR, Vieira MLC, de Souza CL, de Souza AP (2003) Reciprocal recurrent selection effects on the genetic structure of tropical maize populations assessed at microsatellite loci. Genet Mol Biol 26:355–364
Posselt UK, Barre P, Brazauskas G, Turner LB (2006) Comparative analysis of genetic similarity between perennial ryegrass genotypes investigated with AFLPs, SSRs, RAPDs and ISSRs. Czech J Genet Plant Breed 42:87–94
Reed JW (2001) Roles and activities of Aux/IAA proteins in Arabidopsis. Trends Plant Sci 6:420–425. doi:10.1016/S1360-1385(01)02042-8
Song Y, You J, Xiong L (2009) Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis. Plant Mol Biol 70:297–309. doi:10.1007/s11103-009-9474-1
Waples RS (1989) Temporal variation in allele frequencies: testing the right hypothesis. Evolution 43:1236–1251
Wisser RJ, Murray SC, Kolkman JM, Ceballos H, Nelson RJ (2008) Selection mapping of loci for quantitative disease resistance in a diverse maize population. Genetics 180:583–599. doi:10.1534/genetics.108.090118
Yang X, Lee S, So J, Dharmasiri S, Dharmasiri N, Ge L, Jensen C, Hangarter R, Hobbie L, Estelle M (2004) The IAA1 protein is encoded by AXR5 and is substrate of SCFTIR1. Plant J 40:772–782. doi:10.1111/j.1365-313X.2004.02254.x
Acknowledgments
This study was funded by the EU framework V project GRASP (QLRT-2001-00862) and partly supported by the Fulbright Scholarship (Grantee ID 68433937).
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2013 Springer Science+Business Media Dordrecht
About this paper
Cite this paper
Brazauskas, G., Pašakinskienė, I., Lübberstedt, T. (2013). Estimation of Temporal Allele Frequency Changes in Ryegrass Populations Selected for Axillary Tiller Development. In: Barth, S., Milbourne, D. (eds) Breeding strategies for sustainable forage and turf grass improvement. Springer, Dordrecht. https://doi.org/10.1007/978-94-007-4555-1_10
Download citation
DOI: https://doi.org/10.1007/978-94-007-4555-1_10
Published:
Publisher Name: Springer, Dordrecht
Print ISBN: 978-94-007-4554-4
Online ISBN: 978-94-007-4555-1
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)