Skip to main content

Comparing Part-Whole Reductive Explanations in Biology and Physics1

  • Conference paper
  • First Online:
Explanation, Prediction, and Confirmation

Part of the book series: The Philosophy of Science in a European Perspective ((PSEP,volume 2))

Abstract

Many biologists and philosophers have worried that importing models of reasoning from the physical sciences obscures our understanding of reasoning in the life sciences. In this paper we discuss one example that partially validates this concern: part-whole reductive explanations. Biology and physics tend to incorporate different models of temporality in part-whole reductive explanations. This results from differential emphases on compositional and causal facets of reductive explanations, which have not been distinguished reliably in prior philosophical analyses. Keeping these two facets distinct facilitates the identification of two further aspects of reductive explanation: intrinsicality and fundamentality. Our account provides resources for discriminating between different types of reductive explanation and suggests a new approach to comprehending similarities and differences in the explanatory reasoning found in biology and physics.

1 Both authors contributed equally to this paper. We are grateful for the comments and suggestions we have received on this material from many colleagues, including Ingo Brigandt, Tom Doyle, Susan Hawthorne, Marie Kaiser, Peter McLaughlin, Ken Schaffner, Ken Waters, and Marcel Weber. Useful feedback also came from participants at the 2009 workshop ‘Explanation, Confirmation, and Prediction in Biology and Medicine,’ held in Konstanz, Germany and sponsored by the European Science Foundation (Research Networking Programme). We want to express our appreciation for financial support from Alexander von Humboldt Foundation to pursue this collaboration, which grew out of our mutual participation in the Second German-American Frontiers of Humanities Symposium, Hamburg, Germany, October 2005, sponsored by the Alexander von Humboldt Foundation and the American Philosophical Society.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 189.00
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 249.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 249.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  • Veronique Albanese, Alice Yen-Wen Yam, Joshua Baughman, Charles Parnot, and Judith Frydman, “Systems analyses reveal two chaperone networks with distinct functions in eukaryotic cells”, in: Cell 124, 2006, pp. 75-88.

    Article  Google Scholar 

  • Christian B. Anfinsen, “Principles that govern the folding of protein chains”, in: Science 181, 1973, pp. 223-230.

    Article  Google Scholar 

  • Neil W. Ashcroft and N. David Mermin, Solid State Physics. Philadelphia, Cengage Learning Services 1976.

    Google Scholar 

  • John Beatty, “The proximate/ultimate distinction in the multiple careers of Ernst Mayr”, in: Biology and Philosophy 9, 1994, pp. 333-356.

    Article  Google Scholar 

  • William Bechtel and Robert C. Richardson, Discovering Complexity: Decomposition and Localization as Strategies in Scientific Research. Princeton: Princeton University Press 1993.

    Google Scholar 

  • Patricia L. Clark, “Protein folding in the cell: reshaping the folding funnel”, in: Trends in Biochemical Sciences 29, 2004, pp. 527-534.

    Article  Google Scholar 

  • Carl. F. Craver and William Bechtel, “Top-down causation without top-down causes”, in: Biology and Philosophy 22, 2007, pp. 547-563.

    Article  Google Scholar 

  • Megan Delehanty, “Emergent properties and the context objection to reduction”, in: Biology and Philosophy 20, 2005, pp. 715-734.

    Article  Google Scholar 

  • Christopher M. Dobson, “Protein folding and misfolding”, in: Nature 426, 2003, pp. 884-890.

    Article  Google Scholar 

  • R. John Ellis, “Steric chaperones”, in: Trends in Biochemical Sciences 23, 1998, pp. 43-45.

    Article  Google Scholar 

  • R. John Ellis, “Macromolecular crowding: obvious but underappreciated”, in: Trends in Biochemical Sciences 26, 2001, pp. 597-604.

    Article  Google Scholar 

  • Martin E. Feder and Gretchen E. Hofmann, “Heat-shock proteins, molecular chaperones, and the stress response: evolutionary and ecological physiology”, in: Annual Review of Physiology 61, 1999, pp. 243-282.

    Article  Google Scholar 

  • Robert B. Freedman, “Protein folding in the cell”, in: Thomas E. Creighton (Ed.), Protein Folding. New York: W.H. Freeman and Company 1999, pp. 455-539.

    Google Scholar 

  • Judith Frydman, “Folding of newly translated proteins in vivo: the role of molecular chaperones”, in: Annual Review of Biochemistry 70, 2001, pp. 603-647.

    Article  Google Scholar 

  • Dirar Homouz, Michael Perham, Antonius Samiotakis, Margaret S. Cheung, and Pernilla Wittung-Stafshede, “Crowded, cell-like environment induces shape changes in aspherical protein”, in: Proceedings of the National Academy of Sciences of the United States of America 105, 2008, pp. 11754-11759.

    Article  Google Scholar 

  • Jay R. Hove, Reinhard W. Köster, Arian S. Forouhar, Gabriel Acevedo-Bolton, Scott E. Fraser, and Morteza Gharib, “Intracardiac fluid forces are an essential epigenetic factor for embryonic cardiogenesis”, in: Nature 421, 2003, pp. 172-177.

    Article  Google Scholar 

  • Paul Humphreys, “How properties emerge”, in: Philosophy of Science 64, 1997, pp. 1-17.

    Article  Google Scholar 

  • Andreas Hüttemann, “Explanation, emergence, and quantum entanglement”, in: Philosophy of Science 72, 2005, pp. 114-127.

    Article  Google Scholar 

  • Mads Kærn, Timothy Elston, William Blake, and James Collins, “Stochasticity in gene expression: from theories to phenotypes”, in: Nature Reviews Genetics 6, 2005, pp. 451-464.

    Article  Google Scholar 

  • Jaegwon Kim, Mind in a Physical World. Cambridge, MA: MIT Press 1998.

    Google Scholar 

  • I. Marije Liscalijet, Bertrand Kleizen, and Ineke Braakmen, “Studying protein folding in vivo”, in: Johannes Buchner and Thomas Kiefhaber (Eds.), Protein Folding Handbook. Part II. Weinheim: WILEY-VCH Verlag 2005, pp. 73-104.

    Chapter  Google Scholar 

  • Sophie Maisnier-Patin, John R. Roth, Asa Fredriksson, Thomas Nystrom, Otto G. Berg, and Dan I. Andersson, “Genomic buffering mitigates the effects of deleterious mutations in bacteria”, in: Nature Genetics 37, 2005, pp. 1376-1379.

    Article  Google Scholar 

  • Ernst Mayr, “Cause and effect in biology”, in: Science 134, 1961, pp. 1501-1506.

    Article  Google Scholar 

  • Ernst Mayr, Toward a New Philosophy of Biology: Observations of an Evolutionist. Cambridge, MA: Harvard University Press 1988.

    Google Scholar 

  • Ernst Mayr, What Makes Biology Unique? Considerations on the Autonomy of a Scientific Discipline. New York: Cambridge University Press 2004.

    Book  Google Scholar 

  • Amie J. McClellan, Melissa D. Scott, and Judith Frydman, “Folding and quality control of the VHL tumor suppressor proceed through distinct chaperone pathways”, in: Cell 121, 2005, pp. 739-748.

    Article  Google Scholar 

  • Ernest Nagel, The Structure of Science: Problems in the Logic of Scientific Explanation. New York: Harcourt, Brace & World, Inc 1961.

    Google Scholar 

  • J. S. Richardson, “What do the folds in proteins look like?”, in Donald B. Wetlaufer (Ed.), The Protein Folding Problem. Boulder, CO: Westview Press 1982, pp. 1-28.

    Google Scholar 

  • Sahotra Sarkar, Genetics and Reductionism. Cambridge: Cambridge University Press 1998.

    Google Scholar 

  • George G. Simpson, This View of Life: The World of an Evolutionist. New York: Harcourt, Brace & World 1964.

    Google Scholar 

  • Yun-Chi Tang, Hung-Chun Chang, Annette Roeben, Dirk Wischnewski, Nadine Wischnewski, Michael J. Kerner, F Ulrich Hartl, and Manajit Hayer-Hartl, “Structural features of the GroEL-GroES nano-cage required for rapid folding of encapsulated protein”, in: Cell 125, 2006, pp. 903-914.

    Article  Google Scholar 

  • Yun-Chi Tang, Hung-Chun Chang, Kausik Chakraborty, F. Ulrich Hartl, and Manajit Hayer-Hartl, “Essential role of the chaperonin folding compartment in vivo”, in: EMBO Journal 27, 2008, pp. 1458-1468.

    Google Scholar 

  • Saskia M. van der Vies, Anthony Gatenby, Paul V. Viitanen, and George H. Lorimer, “Molecular chaperones in and their role in protein assembly”, in: Jeffrey L. Cleland (Ed.), Protein Folding In Vivo and In Vitro. Washington, DC: American Chemical Society, 1993, pp. 72-83.

    Chapter  Google Scholar 

  • William C. Wimsatt, “Reductive explanation: a functional account”, in: Robert S. Cohen (Ed.), Proceedings of the Philosophy of Science Association, 1974. Dordrecht, Holland: D. Reidel Publishing Company, 1974, pp. 671-710.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Alan C. Love .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2011 Springer Science+Business Media B.V.

About this paper

Cite this paper

Love, A.C., Hüttemann, A. (2011). Comparing Part-Whole Reductive Explanations in Biology and Physics1 . In: Dieks, D., Gonzalez, W., Hartmann, S., Uebel, T., Weber, M. (eds) Explanation, Prediction, and Confirmation. The Philosophy of Science in a European Perspective, vol 2. Springer, Dordrecht. https://doi.org/10.1007/978-94-007-1180-8_13

Download citation

Publish with us

Policies and ethics