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Next-Generation Sequencing and Assembly of Plant Genomes

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PlantOmics: The Omics of Plant Science

Abstract

Next-generation sequencing technology produces enormous volume of accurate and inexpensive sequence data in a short span of time. Three available common next-generation sequencing (NGS) platforms for genome sequencing are discussed here. The genome assembly and scaffolding algorithms are described with special emphasis on de novo assembly of short-read sequences. The biological applications of next-generation sequencing in plant sciences are covered with examples from plant genomics. An account on future prospects of this technology in plant genome analysis is discussed.

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Authors and Affiliations

  1. Centre for Bioinformatics, Pondicherry University, Pondicherry, 605 014, India

    Basant K. Tiwary Ph.D.

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  1. Basant K. Tiwary Ph.D.
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Correspondence to Basant K. Tiwary Ph.D. .

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Editors and Affiliations

  1. Department of Genomics, Institute of Integrative Omics and Applied Biotechnology (IIOAB), Nonakuri, West Bengal, India

    Debmalya Barh

  2. University of Agriculture, Centre of Biochemistry and Biotechnology, Faisalabad, Pakistan

    Muhammad Sarwar Khan

  3. Department of Plant Biology, North Carolina State University, Raleigh, North Carolina, USA

    Eric Davies

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Tiwary, B.K. (2015). Next-Generation Sequencing and Assembly of Plant Genomes. In: Barh, D., Khan, M., Davies, E. (eds) PlantOmics: The Omics of Plant Science. Springer, New Delhi. https://doi.org/10.1007/978-81-322-2172-2_3

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