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Plant Lipidomics: Signalling and Analytical Strategies

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PlantOmics: The Omics of Plant Science

Abstract

The plant lipidomics is a comprehensive system of all lipids in plants with respect to cell signalling, membrane architecture, transcriptional and translational modulation and cell-cell and cell-protein interactions in response to environmental changes over time. This chapter is mainly focused on the role of plant lipids in signalling pathways during stress conditions, which were described in detail. In order to ameliorate lipid research, various analytical methods developed to characterise and quantify lipids are discussed with the salient points. Various lipid databases are provided which will be useful to access a wide range of information about lipids. Few online resources for the lipids are also described. This can help further research in the field of plant lipidomics. In conclusion, the role of plant lipids over human health and some of biological roles were illustrated.

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Abbreviations

ABA:

Abscisic acid

ATNHX1:

Vacuolar Na+/H+ antiporter

ATP:

Adenosine triphosphate

ALA:

Alpha-linolenic acid

Ca2+ :

Calcium ion

CAT1 :

Catalase1 gene

cAMP:

Cyclic AMP

CDP-DAG:

Cytidine diphosphate diacylglycerol

CID:

Collision-induced dissociation

CLA:

Conjugated linoleic acid

CMP:

Cytidine monophosphate

CoA:

Coenzyme A

DAG:

Diacylglycerol

dc:

Direct current

DGDG:

Digalactosyldiacylglycerol

DPG:

Diphosphatidylglycerol

DGPP:

Diacylglycerol pyrophosphate

DHA:

Docosahexaenoic acid

EPA:

Eicosapentaenoic acid

ER:

Endoplasmic reticulum

ESI:

Electrospray ionisation

FT-ICR:

Fourier transform ion cyclotron resonance

FTMS:

Fourier transform mass spectrometer

GDP:

Guanosine diphosphate

GTP:

Guanosine triphosphate

H2O2 :

Hydrogen peroxide

HPLC:

High-pressure liquid chromatography

ILCNC:

International Lipid Classification and Nomenclature Committee

[Ins(1,4,5)P3]:

Inositol (1,4,5) trisphosphate

IP3R:

Inositol triphosphate receptors

IR:

Infrared lasers

LA:

Linoleic acid

LC:

Liquid chromatography

LIMSA:

Lipid mass spectrum analysis

LIT:

Linear ion trap

LTPs:

Lipid transfer proteins

LTQ:

Linear trap quadrupole

LPC:

Lysophosphatidylcholine

MALDI:

Matrix-assisted laser desorption/ionisation

MAPK:

Mitogen-activated protein kinase

MGDG:

Monogalactosyldiacylglycerol

MPIS:

Multiple precursor ion scanning

MRM:

Multiple reaction monitoring

MS:

Mass spectrometry

NMR:

Nuclear magnetic resonance

NP:

Normal phase

OCN:

Oscillating capillary nebuliser

PA:

Phosphatidic acid

PAK:

Phosphatidic acid kinase

PC:

Phosphatidylcholine

PE:

Phosphatidylethanolamine

PG:

Phosphatidylglycerol

PI:

Phosphatidylinositol

PI3K:

Phosphoinositide 3-kinase

[PI-PLC]:

Phosphoinositide-specific phospholipase C

PIP2 :

Phosphatidylinositol-4,5-bipho-sphate

PKC:

Phosphokinase C

PK-C:

Protein kinase C

PLA2 :

Phospholipase A2

PLC:

Phospholipase C

PLC-DAG:

Phospholipase C-Diacylglycerol kinase

PLD:

Phospholipase D

[PtdIns(4,5)P2]:

Phosphatidylinositol 4,5-bis-phosphate

PtdOH:

Substrate phosphatidic acid

PUFAs:

Polyunsaturated fatty acids

rf:

Radio frequency

ROS:

Reactive oxygen species

RP:

Reverse phase

SA:

Sialic acid

SAR:

Systemic acquired resistance

SECD:

Spectrum extraction from chromatographic data

SIMS:

Secondary ion mass spectrometry

SMILES:

Simplified Molecular Line Entry Specification

THAP:

2,4,6-Trihydroxyacetophenone

TLC:

Thin-layer chromatography

TOF:

Time of flight

TP:

Tonoplast

TAG:

Triacylglycerol

TVP1:

Vacuolar-type proton translocating pyrophosphate1

UV:

Ultraviolet

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Authors and Affiliations

  1. Department of Biotechnology, Periyar University, Salem, India

    Elangovan Namasivayam Ph.D., R. Kowsalya Ph.D., Pavan Kumar Padarthi Ph.D., K. Manigandan Ph.D., Richard L. Jayaraj Ph.D.,  Johnravindar D Ph.D. & Kaliaperumal Jagatheesh Ph.D.

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  1. Elangovan Namasivayam Ph.D.
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  2. R. Kowsalya Ph.D.
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Correspondence to Elangovan Namasivayam Ph.D. .

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Editors and Affiliations

  1. Department of Genomics, Institute of Integrative Omics and Applied Biotechnology (IIOAB), Nonakuri, West Bengal, India

    Debmalya Barh

  2. University of Agriculture, Centre of Biochemistry and Biotechnology, Faisalabad, Pakistan

    Muhammad Sarwar Khan

  3. Department of Plant Biology, North Carolina State University, Raleigh, North Carolina, USA

    Eric Davies

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© 2015 Springer India

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Namasivayam, E. et al. (2015). Plant Lipidomics: Signalling and Analytical Strategies. In: Barh, D., Khan, M., Davies, E. (eds) PlantOmics: The Omics of Plant Science. Springer, New Delhi. https://doi.org/10.1007/978-81-322-2172-2_11

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