Abstract
Biochemical and genetic advances have fully integrated transcriptional control with the chromatin infrastructure within which DNA is packaged. Central to this integration is the recognition that corepressor complexes exist that interact with sequence-specific DNA-binding proteins, methyl-CpG-binding proteins, nucleosomal histones, and the basal transcriptional machinery. The purpose of this chapter is to discuss some of the unifying features of these diverse complexes and propose molecular mechanisms by which they might function.
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References
Alifragis P, Poortinga G, Parkhurst SM, Delidakis C (1997) A network of interacting transcriptional regulators involved in Drosophila neural fate specification revealed by the yeast two-hybrid system. Proc Natl Acad Sci USA 94: 13099–13104
Alkema MJ, Bronk M, Verhoeven E, Otte A, van’t Veer LJ, Berns A, van Lohuizen M (1997a) Identification of Bmil-interacting proteins as constituents of a multimeric mammalian polycomb complex. Genes Dev 11: 226–240
Alkema MJ, Jacobs J, Voncken JW, Jenkins NA, Copeland NG, Satijn DP, Otte AP, Berns A, van Lohuizen M (1997b) MPc2, a new murine homolog of the Drosophila polycomb protein is a member of the mouse polycomb transcriptional repressor complex. J Mol Biol 273: 993–1003
Alland L, Muhle R, Hou H Jr, Potes J, Chin L, Schreiber-Agus N, DePinho RA (1997) Role for N-CoR and histone deacetylase in Sin3-mediated transcriptional repression [see comments]. Nature 387: 49–55
Almouzni G, Mechali M, Wolfe AP (1990) Competition between transcription complex assembly and chromatin assembly on replicating DNA. Embo J 9: 573–582
Almouzni G, Mechali M, Wolfe AP (1991) Transcription complex disruption caused by a transition in chromatin structure. Mol Cell Biol 11: 655–665
Almouzni G, Wolffe AP (1993) Replication-coupled chromatin assembly is required for the repression of basal transcription in vivo. Genes Dev 7: 2033–2047
Andell III F, Ladurner AG, Inouye C, Tjian R, Nogales E (1999) Three dimensional structure of the human TFIID-IIA-IIB complex. Science 286: 2153–2156
Annunziato AT, Frado LL, Seale RL, Woodcock CL (1988) Treatment with sodium butyrate inhibits the complete condensation of interphase chromatin. Chromosoma 96: 132–138
Arents G, Burlingame RW, Wang BC, Love WE, Moudrianakis EN (1991) The nucleosomal core histone octamer at 3.1 A resolution: a tripartite protein assembly and a left-handed superhelix. Proc Natl Acad Sci USA 88: 10148–10152
Arndt KT, Styles CA, Fink GR (1989) A suppressor of a HIS4 transcriptional defect encodes a protein with homology to the catalytic subunit of protein phosphatases. Cell 56: 527–537
Aronson BD, Fisher AL, Blechman K, Caudy M, Gergen JP (1997) Groucho-dependent and -independent repression activities of Runt domain proteins. Mol Cell Biol 17: 5581–5587
Auble DT, Hansen KE, Mueller CG, Lane WS, Thorner J, Hahn S (1994) Motl, a global repressor of RNA polymerase II transcription, inhibits TBP binding to DNA by an ATP-dependent mechanism. Genes Dev 8: 1920–1934
Ausio J, Dong F, van Holde KE (1989) Use of selectively trypsinized nucleosome core particles to analyze the role of the histone “tails” in the stabilization of the nucleosome. J Mol Biol 206: 451–463
Ayer DE, Kretzner L, Eisenman RN (1993) Mad: a heterodimeric partner for Max that antagonizes Myc transcriptional activity. Cell 72: 211 222
Ayer DE, Lawrence QA, Eisenman RN (1995) Mad-Max transcriptional repression is mediated by ternary complex formation with mammalian homologs of yeast repressor Sin3. Cell 80: 767–776
Baneres JL, Martin A, Parello J (1997) The N tails of histones H3 and H4 adopt a highly structured conformation in the nucleosome. J Mol Biol 273: 503–508
Barra JL, Rhounim L, Rossignol JL, Faugeron G (2000) Histone HI Is Dispensable for MethylationAssociated Gene Silencing in Ascobolus immersus and Essential for Long Life Span. Mol Cell Biol 20: 61–69
Bauer WR, Hayes JJ, White JH, Wolffe AP (1994) Nucleosome structural changes due to acetylation. J Mol Biol 236: 685–690
Bird AP, Wolffe AP (1999) Methylation-induced repression-belts, braces, and chromatin [In Process Citation]. Cell 99: 451–454
Bohm L, Crane-Robinson C (1984) Proteases as structural probes for chromatin: the domain structure of histones. Biosci Rep 4: 365 386
Bouvet P, Dimitrov S, Wolfe AP (1994) Specific regulation of Xenopus chromosomal 5S rRNA gene transcription in vivo by histone H1. Genes Dev 8: 1147–1159
Brand M, Leurent C, Mallouh V, Tora L, Schultz P (1999) Three-dimensional structures of the TAF(II)containing complexes TFIID and TFTC [In Process Citation]. Science 286: 2151–2153
Brehm A, Nielsen SJ, Miska EA, McCance DJ, Reid JL, Bannister AJ, Kouzarides T (1999) The E7 oncoprotein associates with Mit and histone deacetylase activity to promote cell growth. Embo J 18: 2449–2458
Breiling A, Bonte E, Ferrari S, Becker PB, Paru R (1999) The Drosophila Polycomb Protein Interacts with Nucleosomal Core Particles In Vitro via Its Repression Domain. Mol Cell Biol 19: 8451–8460
Brownell JE, Zhou J, Ranalli T. Kobayashi R, Edmondson DG, Roth SY, Allis CD (1996) Tetrahymena histone acetyltransferase A: a homolog to yeast Gcn5p linking histone acetylation to gene activation. Cell 84: 843–851
Buchenau P, Hodgson J, Strutt H, Arndt-Jovin DJ (1998) The distribution of polycomb-group proteins during cell division and development in Drosophila embryos: impact on models for silencing. J Cell Biol 141: 469–481
Buratowski S, Hahn S, Guarente L, Sharp PA (1989) Five intermediate complexes in transcription initiation by RNA polymerase It. Cell 56: 549–561
Cairns BR, Kim YJ, Sayre MH, Laurent BC, Kornberg RD (1994) A multisubunit complex containing the SWI I ADR6, SWI2/SNF2, SWI3, SNF5, and SNF6 gene products isolated from yeast. Proc Natl Acad Sci USA 91: 1950–1954
Cameron EE, Bachman KE, Myohanen S, Herman JG, Baylin SB (1999) Synergy of demethylation and histone deacetylase inhibition in the re-expression of genes silenced in cancer. Nat Genet 21: 103 107
Carmen AA, Rundlett SE, Grunstein M (1996) HDAI and HDA3 are components of a yeast histone deacetylase ( HDA) complex. J Biol Chem 271: 15837–15844
Carruthers LM, Bednar J, Woodcock CL, Hansen JC (1998) Linker histones stabilize the intrinsic salt-dependent folding of nucleosomal arrays: mechanistic ramifications for higher-order chromatin folding. Biochemistry 37: 14776–14787
Cary PD, Crane-Robinson C, Bradbury EM, Dixon GH (1982) Effect of acetylation on the binding of N-terminal peptides of histone H4 to DNA. Eur J Biochem 127: 137–143
Cavalli G, Paro R (1998) Chromo-domain proteins: linking chromatin structure to epigenetic regulation. Curr Opin Cell Biol 10: 354–360
Cavallo RA, Cox RT, Moline MM, Roose J, Polevoy GA, Clevers H, Peifer M, Bejsovec A (1998) Drosophila Tcf and Groucho interact to repress Wingless signalling activity. Nature 395: 604–608
Chandler SP, Guschin D, Landsberger N, Wolffe AP (1999) The methyl-CpG binding transcriptional repressor MeCP2 stably associates with nucleosomal DNA. Biochemistry 38: 7008–7018
Chen G, Fernandez J, Mische S, Courey AJ (1999) A functional interaction between the histone deacetylase Rpd3 and the corepressor groucho in Drosophila development. Genes Dev 13: 2218–2230
Chen G, Nguyen PH, Courey AJ (1998) A role for Groucho tetramerization in transcriptional repression. Mol Cell Biol 18: 7259–7268
Chen J, Willingham T, Margraf LR, Schreiber-Agus N, DePinho RA, Nisen PD (1995) Effects of the MYC oncogene antagonist, MAD, on proliferation, cell cycling and the malignant phenotype of human brain tumour cells. Nat Med 1: 638–643
Chipev CC, Wolffe AP (1992) Chromosomal organization of Xenopus laevis oocyte and somatic 5S rRNA genes in vivo. Mol Cell Biol 12: 45–55
Choi CY, Kim YH, Kwon HJ, Kim Y (1999) The homeodomain protein NK-3 recruits Groucho and a histone deacetylase complex to repress transcription. J Biol Chem 274: 33194–33197
Clark DJ, Kimura T (1990) Electrostatic mechanism of chromatin folding. J Mol Biol 211: 883–896
Coffee B, Zhang F, Warren ST, Reines D (1999) Acetylated histones are associated with FMR1 in normal but not fragile X-syndrome cells [published erratum appears in Nat Genet 1999 Jun; 22(2):209]. Nat Genet 22: 98–101
Cote J, Quinn J, Workman JL, Peterson CL (1994) Stimulation of GALA derivative binding to nucleosomal DNA by the yeast SWI/SNF complex. Science 265: 53–60
Covault J, Chalkley R (1980) The identification of distinct populations of acetylated histone. J Biol Chem 255: 9110–9116
Dasso M, Dimitrov S, Wolffe AP (1994) Nuclear assembly is independent of linker histones. Proc Natl Acad Sci USA 91: 12477–12481
De Rubertis F, Kadosh D, Henchoz S, Pauli D, Reuter G, Struhl K, Spierer P (1996) The histone deacetylase RPD3 counteracts genomic silencing in Drosophila and yeast. Nature 384: 589–591
Dong F, Hansen JC, van Holde KE (1990) DNA and protein determinants of nucleosome positioning on sea urchin 5S rRNA gene sequences in vitro. Proc Natl Acad Sci USA 87: 5724–5728
Dubnicoff T, Valentine SA, Chen G, Shi T, Lengyel JA, Paroush Z, Courey AJ (1997) Conversion of dorsal from an activator to a repressor by the global corepressor Groucho. Genes Dev 11: 2952–2957
Eickbush TH, Moudrianakis EN (1978) The histone core complex: an octamer assembled by two sets of protein-protein interactions. Biochemistry 17: 4955–4964
Eilers AL, Billin AN, Liu J, Ayer DE (1999) A 13-Amino Acid Amphipathic alpha-Helix Is Required for the Functional Interaction between the Transcriptional Repressor Mad and mSin3A. J Biol Chem 274: 32750–32756
Eisenmann DM, Dollard C, Winston F (1989) SPT15, the gene encoding the yeast TATA binding factor TFIID, is required for normal transcription initiation in vivo. Cell 58: 1183–1191
Fisher AL, Caudy M (1998) Groucho proteins: transcriptional corepressors for specific subsets of DNA-binding transcription factors in vertebrates and invertebrates. Genes Dev 12: 1931–1940
Fisher AL, Ohsako S, Caudy M (1996) The WRPW motif of the hairy-related basic helix-loop-helix repressor proteins acts as a 4-amino-acid transcription repression and protein-protein interaction domain. Mol Cell Biol 16: 2670–2677
Fletcher TM, Hansen JC (1996) The nucleosomal array: structure/function relationships. Crit Rev Eukaryot Gene Expr 6: 149–188
Franke A, DeCamillis M, Zink D, Cheng N, Brock HW, Paro R (1992) Polycomb and polyhomeotic are constituents of a multimeric protein complex in chromatin of Drosophila melanogaster. Embo J 11: 2941–2950
Freeman L, Kurumizaka H, Wolffe AP (1996) Functional domains for assembly of histones H3 and H4 into the chromatin of Xenopus embryos. Proc Natl Acad Sci USA 93: 12780–12785
Gaillard PH, Martini EM, Kaufman PD, Stillman B, Moustacchi E, Almouzni G (1996) Chromatin assembly coupled to DNA repair: a new role for chromatin assembly factor I. Cell 86: 887–896
Godde JS, Nakatani Y, Wolffe AP (1995) The amino-terminal tails of the core histones and the translational position of the TATA box determine TBP/TFIIA association with nucleosomal DNA. Nucleic Acids Res 23: 4557–4564
Grbavec D, Lo R, Liu Y, Stifani S (1998) Transducin-like Enhancer of split 2, a mammalian homologue of Drosophila Groucho, acts as a transcriptional repressor, interacts with Hairy/Enhancer of split proteins, and is expressed during neuronal development. Eur J Biochem 258: 339–349
Grbavec D, Stifani S (1996) Molecular interaction between TLE1 and the carboxyl-terminal domain of HES-1 containing the WRPW motif. Biochem Biophys Res Commun 223: 701–705
Grunstein M (1990) Histone function in transcription. Annu Rev Cell Biol 6: 643–678
Grunstein M (1997) Histone acetylation in chromatin structure and transcription. Nature 389: 349–352
Gunster MJ, Satijn DP, Hamer KM, den Blaauwen JL, de Bruijn D, Alkema MJ, van Lohuizen M, van Driel R, Otte AP (1997) Identification and characterization of interactions between the vertebrate polycomb-group protein BMII and human homologs of polyhomeotic. Mol Cell Biol 17: 2326–2335
Hamiche A, Sandaltzopoulos R, Gdula DA, Wu C (1999) ATP-dependent histone octamer sliding mediated by the chromatin remodeling complex NURF. Cell 97: 833–842
Hansen JC, Tse C, Wolffe AP (1998) Structure and function of the core histone N-termini: more than meets the eye. Biochemistry 37: 17637–17641
Hashimoto N, Brock HW, Nomura M, Kyba M, Hodgson J, Fujita Y, Takihara Y, Shimada K
Higashinakagawa T (1998) RAE28, BMI1, and M33 are members of heterogeneous multimeric mammalian Polycomb group complexes. Biochem Biophys Res Commun 245: 356–365
Hassig CA, Fleischer TC, Billin AN, Schreiber SL, Ayer DE (1997) Histone deacetylase activity is required for full transcriptional repression by mSin3A. Cell 89: 341–347
Hayes JJ, Bashkin J, Tullius TD, Wolffe AP (199la) The histone core exerts a dominant constraint on the structure of DNA in a nucleosome. Biochemistry 30: 8434–8440
Hayes JJ, Clark DJ, Wolffe AP (199 1 b) Histone contributions to the structure of DNA in the nucleosome. Proc Natl Acad Sci USA 88: 6829–6833
Hayes JJ, Tullius TD, Wolffe AP (1990) The structure of DNA in a nucleosome. Proc Natl Acad Sci USA 87: 7405–7409
Hebbes TR, Clayton AL, Thorne AW, Crane-Robinson C (1994) Core histone hyperacetylation co-maps with generalized DNase I sensitivity in the chicken beta-globin chromosomal domain. Embo J 13: 1823–1830
Heinzel T, Lavinsky RM, Mullen TM, Soderstrom M, Laherty CD, Torchia J, Yang WM, Brard G, Ngo SD, Davie JR, Seto E, Eisenman RN, Rose DW, Glass CK, Rosenfeld MG (1997) A complex containing N-CoR, mSin3 and histone deacetylase mediates transcriptional repression [see comments]. Nature 387: 43–48
Herskowitz I, Andrews B, Kruger W, Ogas J, Sil A, Coburn C, Peterson C (1992) Integration of multiple regulatory inputs in the control of HO expression in yeast. In: McKnight SL, Yamamoto K (ed) Transcriptional Regulation. Cold Spring Harbor Press, New York, pp 949–974
Hirschhorn JN, Brown SA, Clark CD, Winston F (1992) Evidence that SNF2/SWI2 and SNF5 activate transcription in yeast by altering chromatin structure. Genes Dev 6: 2288–2298
Holstege FC, Jennings EG, Wyrick JJ, Lee TI, Hengartner CJ, Green MR, Golub TR, Lander ES, Young RA (1998) Dissecting the regulatory circuitry of a eukaryotic genome. Cell 95: 717–728
Hong L, Schroth GP, Matthews HR, Yau P, Bradbury EM (1993) Studies of the DNA binding properties of histone H4 amino terminus. Thermal denaturation studies reveal that acetylation markedly reduces the binding constant of the H4 “tail” to DNA. J Biol Chem 268: 305–314
Horlein AJ, Naar AM, Heinzel T, Torchia J, Gloss B, Kurokawa R, Ryan A, Kamei Y, Soderstrom M, Glass CK, et al. (1995) Ligand-independent repression by the thyroid hormone receptor mediated by a nuclear receptor co-repressor [see comments]. Nature 377: 397–404
Howe L, Itoh T, Katagiri C, Ausio J (1998) Histone HI binding does not inhibit transcription of nucleosomal Xenopus laevis somatic 5S rRNA templates. Biochemistry 37: 7077–7082
Hurlin P,1, Queva C, Koskinen PJ, Steingrimsson E, Ayer DE, Copeland NG, Jenkins NA, Eisenman RN (1995) Mad3 and Mad4: novel Max-interacting transcriptional repressors that suppress c-myc dependent transformation and are expressed during neural and epidermal differentiation. Embo J 14: 5646–5659
Imai Y, Kurokawa M, Tanaka K, Friedman AD, Ogawa S, Mitani K, Yazaki Y, Hirai H (1998) TLE, the human homolog of groucho, interacts with AMLI and acts as a repressor of AML1-induced trans-activation. Biochem Biophys Res Commun 252: 582–589
Imbalzano AN, Kwon H, Green MR, Kingston RE (1994) Facilitated binding of TATA-binding protein to nucleosomal DNA [see comments]. Nature 370: 481–485
Imhof A, Yang XJ, Ogryzko VV, Nakatani Y, Wolfe AP, Ge H (1997) Acetylation of general transcription factors by histone acetyltransferases. Curr Biol 7: 689–692
Jimenez G, Paroush Z, Ish-Horowicz D (1997) Groucho acts as a corepressor for a subset of negative regulators, including Hairy and Engrailed. Genes Dev 11: 3072–3082
Jones PL, Veenstra GJ, Wade PA, Vermaak D, Kass SU, Landsberger N, Strouboulis J, Wolfe AP (1998) Methylated DNA and MeCP2 recruit histone deacetylase to repress transcription. Nat Genet 19: 187–191
Jurgens G (1985) A group of genes controlling the spatial expression of the bithorax complex in Drosophila. Nature 316: 153–155
Kadosh D, Struhl K (1997) Repression by Ume6 involves recruitment of a complex containing Sin3 corepressor and Rpd3 histone deacetylase to target promoters. Cell 89: 365–371
Kadosh D, Struhl K (1998) Histone deacetylase activity of Rpd3 is important for transcriptional repression in vivo. Genes Dev 12: 797–805
Karantza V, Freire E, Moudrianakis EN (1996) Thermodynamic studies of the core histones: pH and ionic strength effects on the stability of the (H3–H4)/(H3–H4)2 system. Biochemistry 35: 2037–2046
Kass SU, Landsberger N, Wolfe AP (1997a) DNA methylation directs a time-dependent repression of transcription initiation. Curr Biol 7: 157–165
Kass SU, Pruss D, Wolfe AP (1997b) How does DNA methylation repress transcription? Trends Genet 13: 444–449
Kasten MM, Dorland S, Stillman DJ (1997) A large protein complex containing the yeast Sin3p and Rpd3p transcriptional regulators. Mol Cell Biol 17: 4852–4858
Kasten MM, Stillman DJ (1997) Identification of the Saccharomyces cerevisiae genes STB1–STB5 encoding Sin3p binding proteins. Mol Gen Genet 256: 376–386
Kaufman PD, Kobayashi R, Stillman B (1997) Ultraviolet radiation sensitivity and reduction of telomeric silencing in Saccharomyces cerevisiae cells lacking chromatin assembly factor-I. Genes Dev 11: 345–357
Kehle J, Beuchle D, Treuheit S, Christen B, Kennison JA, Bienz M, Muller J (1998) dMi-2, a hunchback-interacting protein that functions in polycomb repression. Science 282: 1897–1900
Keleher CA, Redd MJ, Schultz J, Carlson M, Johnson AD (1992) Ssn6-Tupl is a general repressor of transcription in yeast. Cell 68: 709–719
Kennison JA (1993) Transcriptional activation of Drosophila homeotic genes from distant regulatory elements. Trends Genet 9: 75–79
Kim JL, Burley SK (1994) 1.9 A resolution refined structure of TBP recognizing the minor groove of TATAAAAG. Nat Struct Biol 1: 638–653
Kim JL, Nikolov DB, Burley SK (1993a) Co-crystal structure of TBP recognizing the minor groove of a TATA element [see comments]. Nature 365: 520–527
Kim Y, Geiger JH, Hahn S, Sigler PB (1993b) Crystal structure of a yeast TBP/TATA-box complex [see comments]. Nature 365: 512–520
Kladde MP, Simpson RT (1994) Positioned nucleosomes inhibit Dam methylation in vivo. Proc Natl Acad Sci USA 91: 1361–1365
Knezetic JA, Luse DS (1986) The presence of nucleosomes on a DNA template prevents initiation by RNA polymerase II in vitro. Cell 45: 95–104
Knoepfler PS, Eisenman RN (1999) Sin meets NuRD and other tails of repression [In Process Citation]. Cell 99: 447–450
Krajewski WA, Becker PB (1998) Reconstitution of hyperacetylated, DNase I-sensitive chromatin characterized by high conformational flexibility of nucleosomal DNA. Proc Natl Acad Sci USA 95: 1540–1545
Kruger W, Herskowitz I (1991) A negative regulator of HO transcription, SIN1 (SPT2), is a nonspecific DNA-binding protein related to HMG]. Mol Cell Biol 11: 4135–4146
Kruger W, Peterson CL, Sil A, Coburn C, Arents G, Moudrianakis EN, Herskowitz I (1995) Amino acid substitutions in the structured domains of histones H3 and 114 partially relieve the requirement of the yeast SWI/SNF complex for transcription. Genes Dev 9: 2770–2779
Kuo MH, Zhou J, Jambeck P, Churchill ME, Allis CD (1998) Histone acetyltransferase activity of yeast Gcn5p is required for the activation of target genes in vivo. Genes Dev 12: 627–639
Kurumizaka H, Wolffe AP (1997) Sin mutations of histone H3: influence on nucleosome core structure and function. Mol Cell Biol 17: 6953–6969
Laherty CD, Yang WM, Sun JM, Davie JR, Seto E, Eisenman RN (1997) Histone deacetylases associated with the mSin3 corepressor mediate mad transcriptional repression. Cell 89: 349–356
Lahoz EG, Xu L, Schreiber-Agus N, DePinho RA (1994) Suppression of Myc, but not Ela, transformation activity by Max-associated proteins, Mad and Mxil. Proc Natl Acad Sci USA 91: 5503–5507
Langst G, Bonte EJ, Corona DFV, Becker PB (1999) Nucleosome movement by CHRAC and ISWI without disruption or transdisplacement of the histone octamer. Cell 97: 843–852
Lee DY, Hayes JJ, Pruss D, Wolfe AP (1993) A positive role for histone acetylation in transcription factor access to nucleosomal DNA. Cell 72: 73 84
Lee KM, Hayes JJ (1998) Linker DNA and HI-dependent reorganization of histone-DNA interactions within the nucleosome. Biochemistry 37: 8622–8628
Levanon D, Goldstein RE, Bernstein Y, Tang H, Goldenberg D, Stifani S, Paroush Z, Groner Y (1998) Transcriptional repression by AMLI and LEE-1 is mediated by the TLE/Groucho corepressors. Proc Natl Acad Sci USA 95: 11590–11595
Li Q, Herrler M, Landsberger N. Kaludov N, Ogryzko VV, Nakatani Y, Wolfe AP (1998) Xenopus NF-Y pre-sets chromatin to potentiate p300 and acetylation-responsive transcription from the Xenopus hsp70 promoter in vivo. Embo J 17: 6300–6315
Li Q, Imhof A, Collingwood TN, Urnov FD, Wolffe AP (1999) p300 stimulates transcription instigated by ligand-hound thyroid hormone receptor at a step subsequent to chromatin disruption. Embo J I8: 5634–5652
Lorch Y, LaPointe JW, Kornberg RD (1987) Nucleosomes inhibit the initiation of transcription but allow chain elongation with the displacement of histones. Cell 49: 203–210
Luger K, Mader AW, Richmond RK, Sargent DF, Richmond TJ (1997a) Crystal structure of the nucleosome core particle at 2.8 A resolution [see comments]. Nature 389: 251–260
Luger K, Rechsteiner TJ, Flaus AJ, Waye MM, Richmond TJ (1997b) Characterization of nucleosome core particles containing histone proteins made in bacteria. J Mol Biol 272: 301–311
Matsui T (1987) Transcription of adenovirus 2 major late and peptide IX genes under conditions of in vitro nucleosome assembly. Mol Cell Biol 7: 1401–1408
Meisterernst M, Horikoshi M, Roeder RG (1990) Recombinant yeast TFIID, a general transcription factor, mediates activation by the gene-specific factor USF in a chromatin assembly assay. Proc Natl Acad Sci USA 87: 9153–9157
Moehrle A, Paro R (1994) Spreading the silence: epigenetic transcriptional regulation during Drosophila development. Dev Genet 15: 478–484
Muscat GE, Burke LI, Downes M (1998) The corepressor N-CoR and its variants RIP13a and RIP 13Delta1 directly interact with the basal transcription factors TFIIB, TAFI132 and TAFII70. Nucleic Acids Res 26: 2899–2907
Mutskov V, Gerber D, Angelov D, Ausio J, Workman J, Dimitrov S (1998) Persistent interactions of core histone tails with nucleosomal DNA following acetylation and transcription factor binding. Mol Cell Biol 18: 6293 6304
Neigeborn L, Carlson M (1984) Genes affecting the regulation of SUC2 gene expression by glucose repression in Saccharomyces cerevisiae. Genetics 108: 845–858
Nightingale K. Dimitrov S, Reeves R, Wolfe AP (1996) Evidence for a shared structural role for HMGI and linker histones B4 and HI in organizing chromatin. Embo J 15: 548–561
Ogryzko VV, Schiltz RL, Russanova V, Howard BH, Nakatani Y (1996) The transcriptional coactivators p300 and CBP are histone acetyltransferases. Cell 87: 953 959
Orlando V, Paro R (1993) Mapping Polycomb-repressed domains in the bithorax complex using in vivo formaldehyde cross-linked chromatin. Cell 75: 1187–1198
Palaparti A, Baratz A, Stifani S (1997) The Groucho/transducin-like enhancer of split transcriptional repressors interact with the genetically defined amino-terminal silencing domain of histone H3. J Biol Chem 272: 26604–26610
Parkhurst SM (1998) Groucho: making its Marx as a transcriptional co-repressor. Trends Genet 14: 130 132
Paro R (1990) Imprinting a determined state into the chromatin of Drosophila. Trends Genet 6: 416–421
Paro R, Harte PJ (1996) The role of Polycomb Group and Trithorax Group chromatin complexes in the maintenance of determined cells rates. In: Russo VEA, Martienssen RA, Riggs AD (eds), Epigenetic mechanisms of gene regulation. Cold Spring Harbor Laboratory Press, New York, pp 507–528
Paro R, Hogness DS (1991) The Polycomb protein shares a homologous domain with a heterochromatinassociated protein of Drosophila. Proc Natl Acad Sci USA 88: 263–267
Paroush Z, Wainwright SM, lsh-Horowitz D (1997) Torso signalling regulates terminal patterning in Drosophila by antagonising Groucho-mediated repression. Development 124: 3827–3834
Parthun MR, Widom J, Gottschling DE (1996) The major cytoplasmic histone acetyltransferase in yeast: links to chromatin replication and histone metabolism. Cell 87: 85–94
Parvin JD, Sharp PA (1993) DNA topology and a minimal set of basal factors for transcription by RNA polymerase Il. Cell 73: 533–540
Patterton HG, Landel CC, Landsman D, Peterson CL, Simpson RT (1998) The biochemical and phenotypic characterization of Hholp, the putative linker histone HI of Saccharomyces cerevisiae. J Biol Chem 273: 7268–7276
Pennings S, Meersseman G, Bradbury EM (1991) Mobility of positioned nucleosomes on 5S rDNA. J Mol Biol 220: 101–110
Pennings S, Meersseman G, Bradbury EM (1994) Linker histones H1 and H5 prevent the mobility of positioned nucleosomes. Proc Natl Acad Sci USA 91: 10275–10279
Perry M, Chalkley R (1982) Histone acetylation increases the solubility of chromatin and occurs sequentially over most of the chromatin. A novel model for the biological role of histone acetylation. J Biol Chem 257: 7336–7347
Peterson CL, Dingwall A, Scott MP (1994) Five SWI/SNF gene products are components of a large multisubunit complex required for transcriptional enhancement [see comments]. Proc Natl Acad Sci USA 91: 2905–2908
Peterson CL, Kruger W, Herskowitz I (1991) A functional interaction between the C-terminal domain of RNA polymerase II and the negative regulator SIN1. Cell 64: 1135–1143
Pirrotta V, Rastelli L (1994) White gene expression, repressive chromatin domains and homeotic gene regulation in Drosophila. Bioessays 16: 549–556
Pruss D, Bartholomew B, Persinger J, Hayes J, Arents G, Moudrianakis EN, Wolfe AP (1996) An asymmetric model for the nucleosome: a binding site for linker histones inside the DNA gyres [see comments]. Science 274: 614–617
Pruss D, Wolffe AP (1993) Histone-DNA contacts in a nucleosome core containing a Xenopus 5S rRNA gene. Biochemistry 32: 6810–6814
Qian YW, Lee EY (1995) Dual retinoblastoma-binding proteins with properties related to a negative regulator of ras in yeast. J Biol Chem 270: 25507–25513
Qian YW, Wang YC, Hollingsworth RE Jr, Jones D, Ling N, Lee EY (1993) A retinoblastoma-binding protein related to a negative regulator of Ras in yeast. Nature 364: 648–652
Ramakrishnan V, Finch JT, Graziano V, Lee PL, Sweet RM (1993) Crystal structure of globular domain of histone H5 and its implications for nucleosome binding. Nature 362: 219–223
Ranjan M, Wong J, Shi YB (1994) Transcriptional repression of Xenopus TR beta gene is mediated by a thyroid hormone response element located near the start site. J Biol Chem 269: 24699–24705
Rastelli L, Chan CS, Pirrotta V (1993) Related chromosome binding sites for zeste, suppressors of zeste and Polycomb group proteins in Drosophila and their dependence on Enhancer of zeste function. Embo J 12: 1513–1522
Roose J, Molenaar M, Peterson J, Hurenkamp J, Brantjes H, Moerer P, van de Wetering M, Destree O, Clevers H (1998) The Xenopus Wnt effector XTcf-3 interacts with Groucho-related transcriptional repressors. Nature 395: 608–612
Rundlett SE, Carmen AA, Kobayashi R, Bavykin S, Turner BM, Grunstein M (1996) HDA1 and RPD3 are members of distinct yeast histone deacetylase complexes that regulate silencing and transcription. Proc Natl Acad Sci USA 93: 14503–14508
Rundlett SE, Carmen AA, Suka N, Turner BM, Grunstein M (1998) Transcriptional repression by UME6 involves deacetylation of lysine 5 of histone H4 by RPD3. Nature 392: 831–835
Santisteban MS, Arents G, Moudrianakis EN, Smith MM (1997) Histone octamer function in vivo: mutations in the dimer-tetramer interfaces disrupt both gene activation and repression. Embo J 16: 2493–2506
Satijn DP, Gunster MJ, van der Vlag J, Hamer KM, Schul W, Alkema MJ, Saurin AJ, Freemont PS, van Driel R, Otte AP (1997a) RINGI is associated with the polycomb group protein complex and acts as a transcriptional repressor. Mol Cell Biol 17: 4105–4113
Satijn DP, Olson DJ, van der Vlag J, Hamer KM, Lambrechts C, Masselink H, Gunster MJ, Sewalt RG, van Driel R, Otte AP (1997b) Interference with the expression of a novel human polycomb protein, hPc2, results in cellular transformation and apoptosis. Mol Cell Biol 17: 6076–6086
Schild C, Claret FX, Wahli W, Wolfe AP (1993) A nucleosome-dependent static loop potentiates estrogen-regulated transcription from the Xenopus vitellogenin BI promoter in vitro. Embo J 12: 423–433
Schoorlemmer J, Marcos-Gutierrez C, Were F, Martinez R, Garcia E, Satijn DP, Otte AP, Vidal M (1997) Ring IA is a transcriptional repressor that interacts with the Polycomb- M33 protein and is expressed at rhombomere boundaries in the mouse hindbrain. Embo J 16: 5930–5942
Sera T, Wolffe AP (1998) Role of histone HI as an architectural determinant of chromatin structure and as a specific repressor of transcription on Xenopus oocyte 55 rRNA genes. Mol Cell Biol 18: 3668–3680
Sewalt RG, van der Vlag J, Gunster MJ, Hamer KM, den Blaauwen JL, Satijn DP, Hendrix T, van Driel R, Otte AP (1998) Characterization of interactions between the mammalian Polycomb-group proteins Enxl/EZH2 and EED suggests the existence of different mammalian Polycomb-group protein complexes. Mol Cell Biol 18: 3586–3595
Shao Z, Raible F, Mollaaghababa R, Guyon JR, Wu CT, Bender W, Kingston RE (1999) Stabilization of chromatin structure by PRC1, a Polycomb complex. Cell 98: 37–46
Shen X, Yu L, Weir JW, Gorovsky MA (1995) Linker histones are not essential and affect chromatin condensation in vivo. Cell 82: 47 56
Shi Y, Seto E, Chang LS, Shenk T (1991) Transcriptional repression by YYI, a human GLI-Kruppelrelated protein, and relief of repression by adenovirus El A protein. Cell 67: 377–388
Shrivastava A, Calame K (1994) An analysis of genes regulated by the multi-functional transcriptional regulator Yin Yang-1. Nucleic Acids Res 22: 5151–5155
Simon J, Chiang A, Bender W (1992) Ten different Polycomb group genes are required for spatial control of the abdA and AbdB homeotic products. Development 114: 493–505
Simpson RT (1991) Nucleosome positioning: occurrence, mechanisms, and functional consequences. Prog Nucleic Acid Res Mol Biol 40: 143–184
Smith S, Stillman B (1989) Purification and characterization of CAF-I, a human cell factor required for chromatin assembly during DNA replication in vitro. Cell 58: 15–25
Solari F, Bateman A, Ahringer J (1999) The Caenorhanditis elegans genes egl-27 and egr-1 are similar to MTAI, a member of a chromatin regulatory complex, and are redundantly required for embryonic patterning. Development 126: 2483–2494
Sondek J, Bohm A, Lambright DG, Hamm HE, Sigler PB (1996) Crystal structure of a G-protein beta gamma dimer at 2.IA resolution [see comments] [corrected] [published erratum appears in Nature 1996 Feb 29;379(65681:847]. Nature 379: 369–374
Steinbach OC, Wolffe AP, Rupp RA (1997) Somatic linker histones cause loss of mesodermal competence in Xenopus. Nature 389: 395–399
Stern MJ, Jensen RE, Herskowitz 1 (1984) Five SWI genes are required for expression of the HO gene in yeast. J Mol Biol 178: 853 868
Strouboulis J, Damjanovski S, Vermaak D, Meric F, Wolffe AP (1999) Transcriptional repression by XPcI, a new Polycomb homolog in Xenopus laevis embryos, is independent of histone deacetylase. Mol Cell Biol 19: 3958 3968
Sun ZW, Hampsey M (1999) A general requirement for the Sin3-Rpd3 histone deacetylase complex in regulating silencing in Saccharomyces cerevisiae. Genetics 152: 921–932
Tamkun JW (1995) The role of brahma and related proteins in transcription and development. Curr Opin Genet Dev 5: 473–477
Tamkun JW, Deuring R, Scott MP, Kissinger M, Pattatucci AM, Kaufman TC, Kennison JA (1992) brahma: a regulator of Drosophila homeotic genes structurally related to the yeast transcriptional activator SNF2/SWI2. Cell 68: 561–572
Taunton J, Hassig CA, Schreiber SL (1996) A mammalian histone deacetylase related to the yeast transcriptional regulator Rpd3p [see comments]. Science 272: 408–411
Tomaszewski R, Mogielnicka E, Jerzmanowski A (1998) Both the 5S rRNA gene and the AT-rich flanks of Xenopus laevis oocyte-type 5S rDNA repeat are required for histone HI-dependent repression of transcription of pol Ill-type genes in in vitro reconstituted chromatin. Nucleic Acids Res 26: 5596–5601
Tong JK, Hassig CA, Schnitzler GR, Kingston RE, Schreiber SL (1998) Chromatin deacetylation by an ATP-dependent nucleosome remodelling complex. Nature 395: 917–921
Tse C, Sera T, Wolfe AP, Hansen JC (1998) Disruption of higher-order folding by core histone acetylation dramatically enhances transcription of nucleosomal arrays by RNA polymerase III. Mol Cell Biol 18: 4629 4638
Tyler JK, Kadonaga JT (1999) The “dark side” of chromatin remodeling: repressive effects on transcription [In Process Citation]. Cell 99: 443–446
Tlira K, Hayes JJ, Wolfe AP (1995) A positive role for nucleosome mobility in the transcriptional activity of chromatin templates: restriction by linker histones. Embo J 14: 3752–3765
Ura K, Nightingale K, Wolffe AP (1996) Differential association of HMGI and linker histones B4 and H1 with dinucleosomal DNA: structural transitions and transcriptional repression. Embo J 15: 4959–4969
Usachenko SI, Gavin IM, Bavykin SG (1996) Alterations in nucleosome core structure in linker histone-depleted chromatin. J Biol Chem 271: 3831–3836
Utley RT, Ikeda K, Grant PA, Cote J, Steger DJ, Eberharter A, John S, Workman JL (1998) Transcriptional activators direct histone acetyltransferase complexes to nucleosomes. Nature 394: 498–502
Valentine SA, Chen G, Shandala T, Fernandez J, Mische S, Saint R, Courey AJ (1998) Dorsal-mediated repression requires the formation of a multiprotein repression complex at the ventral silencer. Mol Cell Biol 18: 6584–6594
van der Vlag J, Otte AP (1999) Transcriptional repression mediated by the human polycomb-group protein EED involves histone deacetylation. Nat Genet 23: 474–478
van Lohuizen M, Tijms M, Voncken JW, Schumacher A, Magnuson T, Wientjens E (1998) Interaction of mouse polycomb-group (Pc-G) proteins Enxl and Enx2 with Eed: indication for separate Pc-G complexes. Mol Cell Biol 18: 3572–3579
Vermaak D, Steinbach OC, Dimitrov S, Rupp RAW, Wolfe AP (1998) The globular domain of histone H1 is sufficient to direct specific gene repression in early Xenopus embryos. Curr Biol 8: 533–536
Vermaak D, Wade PA, Jones PL, Shi YB, Wolffe AP (1999) Functional analysis of the SIN3-histone deacetylase RPD3-RbAp48-histone H4 connection in the Xenopus oocyte. Mol Cell Biol 19: 5847–5860
Verreault A, Kaufman PD, Kobayashi R, Stillman B (1998) Nucleosomal DNA regulates the corehistone-binding subunit of the human Hatl acetyltransferase. Curr Biol 8: 96–108
Vettese-Dadey M, Grant PA, Hebbes TR, Crane-Robinson C, Allis CD, Workman JL (1996) Acetylation of histone H4 plays a primary role in enhancing transcription factor binding to nucleosomal DNA in vitro. Embo J 15: 2508–2518
Vettese-Dadey M, Walter P, Chen H, Juan LJ, Workman JL (1994) Role of the histone amino termini in facilitated binding of a transcription factor, GAL4-AH, to nucleosome cores. Mol Cell Biol 14: 970–981
Vidal M, Gaber RF (1991) RPD3 encodes a second factor required to achieve maximum positive and negative transcriptional states in Saccharomyces cerevisiae. Mol Cell Biol 11: 6317–6327
Vidal M, Strich R, Esposito RE, Gaber RF (1991) RPDI (SIN3/UME4) is required for maximal activation and repression of diverse yeast genes. Mol Cell Biol 11: 6306–6316
Wade PA, Gegonne A, Jones PL, Ballestar E, Aubry F, Wolfe AP (1999) Mi-2 complex couples DNA methylation to chromatin remodelling and histone deacetylation [see comments]. Nat Genet 23: 62–66
Wade PA, Jones PL, Vermaak D, Wolfe AP (1998) A multiple subunit Mi-2 histone deacetylase from Xenopus laevis cofractionates with an associated Snf2 superfamily ATPase. Curr Biol 8: 843–846
Wade PA, Pruss D, Wolfe AP (1997) Histone acetylation: chromatin in action. Trends Biochem Sci 22: 128–132
Wall G, Varga-Weisz PD, Sandaltzopoulos R, Becker PB (1995) Chromatin remodeling by GAGA factor and heat shock factor at the hypersensitive Drosophila hsp26 promoter in vitro. Embo J 14: 1727–1736
Wang H, Clark I, Nicholson PR, Herskowitz I, Stillman DJ (1990) The Saccharomyces cerevisiae SIN3 gene, a negative regulator of HO, contains four paired amphipathic helix motifs. Mol Cell Biol 10: 5927–5936
Wang H, Stillman DJ (1990) In vitro regulation of a SIN3-dependent DNA-binding activity by stimulatory and inhibitory factors. Proc Natl Acad Sci USA 87: 9761–9765
Wang H, Stillman DJ (1993) Transcriptional repression in Saccharomyces cerevisiae by a SIN3-LexA fusion protein. Mol Cell Biol 13: 1805–1814
Wedeen C, Harding K, Levine M (1986) Spatial regulation of Antennapedia and bithorax gene expression by the Polycomb locus in Drosophila. Cell 44: 739–748
Williams FE, Trumbly RJ (1990) Characterization of TUPI, a mediator of glucose repression in Saccharomyces cerevisiae. Mol Cell Biol 10: 6500–6511
Winston F, Allis CD (1999) The bromodomain: a chromatin-targeting module? [news]. Nat Struct Biol 6: 601–604
Wolffe AP (1994a) Nucleosome positioning and modification: chromatin structures that potentiate transcription. Trends Biochem Sci 19: 240–244
Wolffe AP (1994b) Transcriptional activation. Switched-on chromatin. Curr Biol 4: 525–528
Wolffe AP (1998) Chromatin: structure and function. Academic Press, San Diego
Wolffe AP, Hayes JJ (1999) Chromatin disruption and modification. Nucleic Acids Res 27: 711–720
Wolffe AP, Kurumizaka H (1998) The nucleosome: a powerful regulator of transcription. Prog Nucleic Acid Res Mol Biol 61: 379–422
Wong CW, Privalsky ML (1998) Transcriptional repression by the SMRT-mSin3 corepressor: multiple interactions, multiple mechanisms, and a potential role for TFIIB. Mol Cell Biol 18: 5500–5510
Wong J, Li Q, Levi BZ, Shi YB, Wolffe AP (1997a) Structural and functional features of a specific nucleosome containing a recognition element for the thyroid hormone receptor. Embo J 16: 7130–7145
Wong J, Patterton D, Imhof A, Guschin D, Shi YB, Wolffe AP (1998) Distinct requirements for chromatin assembly in transcriptional repression by thyroid hormone receptor and histone deacetylase. Embo J 17: 520–534
Wong J, Shi YB, Wolfe AP (1995) A role for nucleosome assembly in both silencing and activation of the Xenopus TR beta A gene by the thyroid hormone receptor. Genes Dev 9: 2696–2711
Wong J, Shi YB, Wolffc AP (1997b) Determinants of chromatin disruption and transcriptional regulation instigated by the thyroid hormone receptor: hormone-regulated chromatin disruption is not sufficient for transcriptional activation. Embo J 16: 3158 3171
Workman JL, Roeder RG (1987) Binding of transcription factor TFIID to the major late promoter during in vitro nucleosome assembly potentiates subsequent initiation by RNA polymerase II. Cell 51: 613–622
Wyrick JJ, Holstege FC, Jennings EG, Causton HC, Shore D, Grunstein M, Lander ES, Young RA (1999) Chromosomal landscape of nucleosome-dependent gene expression and silencing in yeast. Nature 402: 418–421
Xue Y, Wong J, Moreno GT, Young MK, Cote J, Wang W (1998) NURD, a novel complex with both ATP-dependent chromatin-remodeling and histone deacetylase activities. Mol Cell 2: 851–861
Yang WM, Inouye C, Zeng Y, Bearss D, Seto E (1996a) Transcriptional repression by YYI is mediated by interaction with a mammalian homolog of the yeast global regulator RPD3. Proc Natl Acad Sci USA 93: 12845–12850
Yang XJ, Ogryzko VV, Nishikawa J, Howard BH, Nakatani Y (1996b) A p300/CBP-associated factor that competes with the adenoviral oncoprotein El A. Nature 382: 319–324
Yoshida M, Kijima M, Akita M, Beppu T (1990) Potent and specific inhibition of mammalian histone deacetylase both in vivo and in vitro by trichostatin A. J Biol Chem 265: 17174–17179
Zervos AS, Gyuris J, Brent R (1993) Mxil, a protein that specifically interacts with Max to bind MycMax recognition sites [published erratum appears in Cell 1994 Oct 21; 79(2):following 388]. Cell 72: 223–232
Zhang H, Levine M (1999) Groucho and dCtBP mediate separate pathways of transcriptional repression in the Drosophila embryo. Proc Natl Acad Sci USA 96: 535–540
Zhang W, Bone JR, Edmondson DG, Turner BM, Roth SY (1998a) Essential and redundant functions of histone acetylation revealed by mutation of target lysines and loss of the Gcn5p acetyltransferase. Embo J 17: 3155–3167
Zhang Y, Iratni R, Erdjument-Bromage H, Tempst P, Reinberg D (1997) Histone deacetylases and SAPI8, a novel polypeptide, are components of a human Sin3 complex. Cell 89: 357–364
Zhang Y, LeRoy G, Seelig HP, Lane WS, Reinberg D (1998b) The dermatomyositis-specific autoantigen Mit is a component of a complex containing histone deacetylase and nucleosome remodeling activities. Cell 95: 279 289
Zhou YB, Gerchman SE, Ramakrishnan V, Travers A, Muyldermans S (1998) Position and orientation of the globular domain of linker histone H5 on the nucleosome. Nature 395: 402–405
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Urnov, F.D., Wolffe, A.P., Guschin, D. (2001). Molecular Mechanisms of Corepressor Function. In: Privalsky, M.L. (eds) Transcriptional Corepressors: Mediators of Eukaryotic Gene Repression. Current Topics in Microbiology and Immunology, vol 254. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-662-10595-5_1
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