Skip to main content

BiETopti-BiClustering Ensemble Using Optimization Techniques

  • Conference paper
Advances in Data Mining. Applications and Theoretical Aspects (ICDM 2013)

Part of the book series: Lecture Notes in Computer Science ((LNAI,volume 7987))

Included in the following conference series:

Abstract

In this paper, we present an ensemble method for the biclustering problem that uses optimization techniques to generate consensus. Experiments have shown that the proposed method provides superior bi-clusters than the existing bi-clustering solutions most of the times. Bi-clustering problem has many applications including analysis of gene expression data.

This project is supported by University of Delhi.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 49.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Bergmann, S., Ihmels, J., Barkai, N.: Iterative signature algorithm for the analysis of large-scale gene expression data. In: Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, Department of Molecular Genetics, Weizmann Institute of Science, Rehovot 76100, Israel. Sven.Bergmann@weizmann.ac.il, vol. 67 (March 2003)

    Google Scholar 

  2. Cheng, Y., Church, G.M.: Biclustering of expression data. In: International Conference of Intelligent Systems Molecular Biology, pp. 93–103 (2000)

    Google Scholar 

  3. Gupta, N., Aggarwal, S.: Mib: Using mutual information for biclustering gene expression data. Elsevier Journal of Pattern Recognition 43, 2692–2697 (2010)

    Article  MATH  Google Scholar 

  4. Prelic, A., Bleuler, S., Zimmermann, P., Wille, A., Buhlmann, P., Gruissem, W., Hennig, L., Thiele, L., Zitzler, E.: A systematic comparison and evaluation of biclustering methods for gene expression data. Bioinformatics 22, 1122–1129 (2006)

    Article  Google Scholar 

  5. Tanay, A., Sharan, R., Shamir, R.: Discovering statistically significant biclusters in gene expression data. In: Proceedings of ISMB 2002, pp. 136–144 (2002)

    Google Scholar 

  6. Srinivasan, G.: Operations Research: Principles and Applications. Prentice-Hall of India (2002)

    Google Scholar 

  7. Krumpelman, C., Ghosh, J.: Matching and visualization of multiple overlapping clusterings of microarray data. In: CIBCB 2007, pp. 121–126 (2007)

    Google Scholar 

  8. Dudoit, S., Fridlyand, J.: Bagging to improve the accuracy of a clustering procedure. Bioinformatics 19, 1090–1099 (2003)

    Article  Google Scholar 

  9. Fischer, B., Buhmann, J.M.: Bagging for path-based clustering. In: IEEE Trans. Pattern Anal. Mach. Intell., vol. 25, pp. 1411–1415. IEEE Computer Society, Washington, DC (2003)

    Google Scholar 

  10. Hanczar, B., Nadif, M.: Using the bagging approach for biclustering of gene expression data, vol. 74, pp. 1595–1605. Elsevier Science Publishers B.V, Amsterdam (2011)

    Google Scholar 

  11. Moreau, J.V., Jain, A.K.: The bootstrap approach to clustering. In: Proc. of the NATO Advanced Study Institute on Pattern Recognition Theory and Applications, pp. 63–71. Springer, London (1987)

    Chapter  Google Scholar 

  12. Fred, A.: Finding consistent clusters in data partitions. In: Kittler, J., Roli, F. (eds.) MCS 2001. LNCS, vol. 2096, pp. 309–318. Springer, Heidelberg (2001)

    Chapter  Google Scholar 

  13. Fred, A.L.N.: Data Clustering Using Evidence Accumulation. In: Proc. of the 16th Int’l Conference on Pattern Recognition, pp. 276–280 (2002)

    Google Scholar 

  14. Hu, X., Yoo, I.: Cluster ensemble and its applications in gene expression analysis. In: Proceedings of the Second Conference on Asia-Pacific Bioinformatics, APBC 2004, vol. 29, pp. 297–302. Australian Computer Society, Inc., Darlinghurst (2004)

    Google Scholar 

  15. Karypis, G., Kumar, V.: A fast and high quality multilevel scheme for partitioning irregular graphs. SIAM J. Sci. Comput. 20, 359–392 (1998)

    Article  MathSciNet  Google Scholar 

  16. Strehl, A., Ghosh, J.: Cluster ensembles – A knowledge reuse framework for combining multiple partitions. Journal on Machine Learning Research (JMLR) 3, 583–617 (2002)

    MathSciNet  Google Scholar 

  17. Topchy, A., Jain, A.K., Punch, W.: Combining multiple weak clusterings. In: ICDM, pp. 331–338 (2003)

    Google Scholar 

  18. Topchy, A.P., Bidgoli, B.M., Jain, A.K., Punch, W.F.: Adaptive clustering ensembles. In: ICPR, pp. 272–275 (2004)

    Google Scholar 

  19. Ghaemi, R., Sulaiman, N., Ibrahim, H., Mustapha, N.: A survey: Clustering ensembles techniques. In: World Academy of Science, Engineering and Technology, vol. 38 (2009)

    Google Scholar 

  20. Gullo, F., Domeniconi, C., Tagarelli, A.: Projective clustering ensembles. In: Proceedings of the 2009 Ninth IEEE International Conference on Data Mining, ICDM 2009, pp. 794–799. IEEE Computer Society, Washington, DC (2009)

    Google Scholar 

  21. Singh, V., Mukherjee, L., Peng, J., Xu, J.: Ensemble clustering using semidefinite programming with applications. Mach. Learn. 79(1-2), 177–200 (2010)

    Article  Google Scholar 

  22. Wang, P., Laskey, K.B., Domeniconi, C., Jordan, M.: Nonparametric bayesian co-clustering ensembles. In: Proceedings of the Eleventh SIAM International Conference on Data Mining, SDM 2011, April 28-30, pp. 331–342. SIAM / Omnipress, Mesa (2011)

    Google Scholar 

  23. Ben-Dor, A., Chor, B., Karp, R.M., Yakhini, Z.: Discovering local structure in gene expression data: The order-preserving submatrix problem. Journal of Computational Biology 10(3/4), 373–384 (2003)

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2013 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Aggarwal, G., Gupta, N. (2013). BiETopti-BiClustering Ensemble Using Optimization Techniques. In: Perner, P. (eds) Advances in Data Mining. Applications and Theoretical Aspects. ICDM 2013. Lecture Notes in Computer Science(), vol 7987. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-39736-3_14

Download citation

  • DOI: https://doi.org/10.1007/978-3-642-39736-3_14

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-39735-6

  • Online ISBN: 978-3-642-39736-3

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics