Abstract
We describe two Riemannian frameworks for statistical shape analysis of parameterized surfaces. These methods provide tools for registration, comparison, deformation, averaging, statistical modeling, and random sampling of surface shapes. A crucial property of both of these frameworks is that they are invariant to reparameterizations of surfaces. Thus, they result in natural shape comparisons and statistics. The first method we describe is based on a special representation of surfaces termed square-root functions (SRFs). The pullback of the \(\mathbb{L}^{2}\) metric from the SRF space results in the Riemannian metric on the space of surfaces. The second method is based on the elastic surface metric. We show that a restriction of this metric, which we call the partial elastic metric, becomes the standard \(\mathbb{L}^{2}\) metric under the square-root normal field (SRNF) representation. We show the advantages of these methods by computing geodesic paths between highly articulated surfaces and shape statistics of manually generated surfaces. We also describe applicationsĀ of this framework to image registration and medical diagnosis.
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Notes
- 1.
It is interesting to note that the first two terms in the full elastic metric form the unique family of ultralocal metrics on the space of Riemannian metrics on which diffeomorphisms act by isometriesĀ [14]. The \(\lambda = 0\) case of this metric on Riemannian metrics has been studied in e.g.,Ā [10, 16, 18].
References
Abe K, Erbacher J (1975) Isometric immersions with the same Gauss map. Math Ann 215(3):197ā201
Almhdie A, LĆ©ger C, Deriche M, LĆ©dĆ©e R (2007) 3D registration using a new implementation of the ICP algorithm based on a comprehensive lookup matrix: application to medical imaging. Pattern Recogn Lett 28(12):1523ā1533
Bauer M, Bruveris M (2011) A new Riemannian setting for surface registration. In: International workshop on mathematical foundations of computational anatomy, ppĀ 182ā193
Beg M, Miller M, TrouvĆ© A, Younes L (2005) Computing large deformation metric mappings via geodesic flows of diffeomorphisms. Int J Comput Vis 61(2):139ā157
Bouix S, Pruessner JC, Collins DL, Siddiqi K (2001) Hippocampal shape analysis using medial surfaces. NeuroImage 25:1077ā1089
BrechbĆ¼hler C, Gerig G, KĆ¼bler O (1995) Parameterization of closed surfaces for 3D shape description. Comput Vis Image Underst 61(2):154ā170
Burden MJ, Jacobson JL, Westerlund AJ, Lundahl LH, Klorman R, Nelson CA, Avison MJ, Jacobson SW (2010) An event-related potential study of response inhibition in ADHD with and without prenatal alcohol exposure. Alcohol Clin Exp Res 34(4):617ā627
Cates J, Meyer M, Fletcher P, Whitaker R (2006) Entropy-based particle systems for shape correspondence. In: International workshop on mathematical foundations of computational anatomy, ppĀ 90ā99
Christensen GE, Johnson H (2001) Consistent image registration. IEEE Trans Med Imaging 20(7):568ā582
Clarke B (2010) The metric geometry of the manifold of Riemannian metrics over a closed manifold. Calc Var Partial Differ Equ 39(3):533ā545
Csernansky JG, Wang L, Jones DJ, Rastogi-Cru D, Posener G, Heydebrand JA, Miller JP, Grenander U, Miller MI (2002) Hippocampal deformities in schizophrenia characterized by high dimensional brain mapping. Am J Psychiatry 159(12):1ā7
Davatzikos C, Vaillant M, Resnick S, Prince JL, Letovsky S, Bryan RN (1996) A computerized method for morphological analysis of the corpus callosum. J Comput Assist Tomogr 20:88ā97
Davies RH, Twining CJ, Cootes TF, Taylor CJ (2010) Building 3-D statistical shape models by direct optimization. IEEE Trans Med Imaging 29(4):961ā981
DeWitt BS (1967) Quantum theory of gravity. I. The canonical theory. Phys Rev 160(5):1113ā1148
Dryden IL, Mardia KV (1998) Statistical shape analysis. Wiley, New York
Ebin D (1970) The manifold of Riemannian metrics. In: Symposia in pure mathematics (AMS), volĀ 15, ppĀ 11ā40
Gerig G, Styner M, Shenton ME, Lieberman JA (2001) Shape versus size: improved understanding of the morphology of brain structures. In: MICCAI, ppĀ 24ā32 (2001)
Gil-Medrano O, Michor PW (1991) The Riemannian manifold of all Riemannian metrics. Q J Math 42:183ā202
Gorczowski K, Styner M, Jeong JY, Marron JS, Piven J, Hazlett HC, Pizer SM, Gerig G (2010) Multi-object analysis of volume, pose, and shape using statistical discrimination. IEEE Trans Pattern Anal Mach Intell 32(4):652ā666
Grenander U, Miller MI (1998) Computational anatomy: an emerging discipline. Q Appl Math LVI(4):617ā694
Gu X, Vemuri BC (2004) Matching 3D shapes using 2D conformal representations. In: MICCAI, ppĀ 771ā780
Gu X, Wang S, Kim J, Zeng Y, Wang Y, Qin H, Samaras D (2007) Ricci flow for 3D shape analysis. In: IEEE international conference on computer vision, ppĀ 1ā8
Jacobson SW, Jacobson JL, Sokol RJ, Chiodo LM, Corobana R (2004) Maternal age, alcohol abuse history, and quality of parenting as moderators of the effects of prenatal alcohol exposure on 7.5-year intellectual function. Alcohol Clin Exp Res 28:1732ā1745
Jacobson SW, Jacobson JL, Sokol RJ, Martier SS, Chiodo LM (1996) New evidence for neurobehavioral effects of in utero cocaine exposure. J Pediatr 129:581ā590
Jermyn IH, Kurtek S, Klassen E, Srivastava A (2012) Elastic shape matching of parameterized surfaces using square root normal fields. In: European conference on computer vision, ppĀ 804ā817
Joshi S, Miller M, Grenander U (1997) On the geometry and shape of brain sub-manifolds. Pattern Recogn Artif Intell 11:1317ā1343
Joshi SH, Klassen E, Srivastava A, Jermyn IH (2007) A novel representation for Riemannian analysis of elastic curves in \(\mathbb{R}^{n}\). In: IEEE conference on computer vision and pattern recognition, ppĀ 1ā7
van Kaick O, Zhang H, Hamarneh G, Cohen-Or D (2010) A survey on shape correspondence. In: Eurographics state-of-the-art report, ppĀ 1ā24
Kelemen A, Szekely G, Gerig G (1999) Elastic model-based segmentation of 3D neurological data sets. IEEE Trans Med Imaging 18(10):828ā839
Kilian M, Mitra NJ, Pottmann H (2007) Geometric modeling in shape space. ACM Trans Graph 26(3):64
Kurtek S, Klassen E, Ding Z, Avison MJ, Srivastava A (2011) Parameterization-invariant shape statistics and probabilistic classification of anatomical surfaces. In: Information processing in medical imaging, ppĀ 147ā158
Kurtek S, Klassen E, Ding Z, Jacobson SW, Jacobson JL, Avison MJ, Srivastava A (2011) Parameterization-invariant shape comparisons of anatomical surfaces. IEEE Trans Med Imaging 30(3):849ā858
Kurtek S, Klassen E, Ding Z, Srivastava A (2010) A novel Riemannian framework for shape analysis of 3D objects. In: IEEE conference on computer vision and pattern recognition, ppĀ 1625ā1632
Kurtek S, Klassen E, Gore J, Ding Z, Srivastava A (2012) Elastic geodesic paths in shape space of parameterized surfaces. IEEE Trans Pattern Anal Mach Intell 34(9):1717ā1730
Kurtek S, Klassen E, Gore JC, Ding Z, Srivastava A (2011) Classification of mathematics deficiency using shape and scale analysis of 3D brain structures. In: SPIE medical imaging: image processing, volĀ 7962
Kurtek S, Samir C, Ouchchane L (2014) Statistical shape model for simulation of realistic endometrial tissue. In: International conference on pattern recognition applications and methods
Kurtek S, Srivastava A, Klassen E, Ding Z (2012) Statistical modeling of curves using shapes and related features. J Am Stat Assoc 107(499):1152ā1165
Kurtek S, Srivastava A, Klassen E, Laga H (2013) Landmark-guided elastic shape analysis of spherically-parameterized surfaces. Comput Graph Forum 32(2):429ā438
Malladi R, Sethian JA, Vemuri BC (1996) A fast level set based algorithm for topology-independent shape modeling. J Math Imaging Vis 6:269ā290
Mio W, Srivastava A, Joshi SH (2007) On shape of plane elastic curves. Int J Comput Vis 73(3):307ā324
Samir C, Kurtek S, Srivastava A, Canis M (2014) Elastic shape analysis of cylindrical surfaces for 3D/2D registration in endometrial tissue characterization. IEEE Trans Med Imaging 33(5):1035ā1043
Srivastava A, Klassen E, Joshi SH, Jermyn IH (2011) Shape analysis of elastic curves in Euclidean spaces. IEEE Trans Pattern Anal Mach Intell 33(7):1415ā1428
Srivastava A, Turaga P, Kurtek S (2012) On advances in differential-geometric approaches for 2D and 3D shape analyses and activity recognition. Image Vis Comput 30(6ā7):398ā416
Styner M, Oguz I, Xu S, BrechbĆ¼hler C, Pantazis D, Levitt J, Shenton ME, Gerig G (2006) Framework for the statistical shape analysis of brain structures using SPHARM-PDM. Insight J 1071:242ā250
Tagare H, Groisser D, Skrinjar O (2009) Symmetric non-rigid registration: a geometric theory and some numerical techniques. J Math Imaging Vis 34(1):61ā88
Vaillant M, Glaunes J (2005) Surface matching via currents. In: Information processing in medical imaging, ppĀ 381ā392
Xie Q, Jermyn IH, Kurtek S, Srivastava A (2014) Numerical inversion of SRNFs for efficient elastic shape analysis of star-shaped objects. In: European conference on computer vision, ppĀ 485ā499
Xie Q, Kurtek S, Christensen GE, Ding Z, Klassen E, Srivastava A (2012) A novel framework for metric-based image registration. In: Workshop on biomedical image registration, ppĀ 276ā285
Xie Q, Kurtek S, Klassen E, Christensen GE, Srivastava A (2014) Metric-based pairwise and multiple image registration. In: European conference on computer vision, ppĀ 236ā250
Xie Q, Kurtek S, Le H, Srivastava A (2013) Parallel transport of deformations in shape space of elastic surfaces. In: IEEE international conference on computer vision, pp.Ā 865ā872
Younes L (1998) Computable elastic distance between shapes. SIAM J Appl Math 58(2):565ā586
Acknowledgements
This work was partially supported by a grant from the Simons Foundation (#317865 to Eric Klassen).
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Kurtek, S., Jermyn, I.H., Xie, Q., Klassen, E., Laga, H. (2016). Elastic Shape Analysis of Surfaces and Images. In: Turaga, P., Srivastava, A. (eds) Riemannian Computing in Computer Vision. Springer, Cham. https://doi.org/10.1007/978-3-319-22957-7_12
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DOI: https://doi.org/10.1007/978-3-319-22957-7_12
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