Abstract
At the end of the third lecture, you:
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Ahmadian L, Van Engen-Verheul M, Bakhshi-Raiez F, Peek N, Cornet R, De Keizer NF (2011) The role of standardized data and terminological systems in computerized clinical decision support systems: literature review and survey. Int J Med Inform 80(2):81–93
Berman JJ (2012) Taxonomic guide to infectious diseases: understanding the biologic classes of pathogenic organisms. Academic, Amsterdam
Berman JJ (2013) Chapter 3—Ontologies and semantics. Principles of big data. Morgan Kaufmann, Boston, MA, pp 35–48
Bhatt M, Rahayu W, Soni SP, Wouters C (2009) Ontology driven semantic profiling and retrieval in medical information systems. Web Semantics Sci Serv Agents World Wide Web 7(4):317–331
Bleiholder J, Naumann F (2008) Data fusion. ACM Comput Surv (CSUR) 41(1):1
Bodenreider O (2004) The Unified Medical Language System (UMLS): integrating biomedical terminology. Nucleic Acids Res 32:D267–D270
Bodenreider O (2008) Biomedical ontologies in action: role in knowledge management, data integration and decision support. Methods Inform Med 47(1):67–79
Bond RR, Finlay DD, Nugent CD, Moore G (2011) A review of ECG storage formats. Int J Med Inform 80(10):681–697
Brown JHU, Loweli DJ (1972) Standardization and health care. IEEE Trans Biomed Eng BME-19(5):331–334
Cheung K-H, Samwald M, Auerbach RK, Gerstein MB (2010) Structured digital tables on the Semantic Web: toward a structured digital literature. Mol Syst Biol 6:403
Dantsin E, Eiter T, Gottlob G, Voronkov A (2001) Complexity and expressive power of logic programming. ACM Comput Surv (CSUR) 33(3):374–425
Eiter T, Ianni G, Polleres A, Schindlauer R, Tompits H (2006) Reasoning with rules and ontologies. Reasoning Web. Springer, New York, pp 93–127
Hajdukiewicz JR, Vicente KJ, Doyle DJ, Milgram P, Burns CM (2001) Modeling a medical environment: an ontology for integrated medical informatics design. Int J Med Inform 62(1):79–99
Hermann GJ, King EJ, Shaw JM (1997) The yeast gene, MDM20, is necessary for mitochondrial inheritance and organization of the actin cytoskeleton. J Cell Biol 137(1):141–153
Hersh W (2010) Information retrieval: a health and biomedical perspective. Springer, New York
Holzinger A (2000) Modul 2: Wissensorganisation und Informatik. In: Holzinger A (ed) Basiswissen Multimedia, Band 2 Lernen Kognitive Grundlagen multimedialer Informationssysteme. Vogel-Buchverlag, Würzburg, pp 51–102
Holzinger A, Geierhofer R, Modritscher F, Tatzl R (2008) Semantic information in medical information systems: utilization of text mining techniques to analyze medical diagnoses. J Univ Comput Sci 14(22):3781–3795
Holzinger A, Stocker C, Ofner B, Prohaska G, Brabenetz A, Hofmann-Wellenhof R (2013) Combining HCI, natural language processing, and knowledge discovery—potential of IBM content analytics as an assistive technology in the biomedical domain. Springer lecture notes in computer science LNCS 7947. Springer, Heidelberg, pp 13–24
Horrocks I (2013) What are ontologies good for? In: Küppers B-O, Hahn U, Artmann S (eds) Evolution of semantic systems. Springer, Berlin, pp 175–188
Jakus G, Milutinović V, Omerović S, Tomažič S (2013) Concepts, ontologies, and knowledge representation. Springer, Berlin
Komaroff AL (1979) The variability and inaccuracy of medical data. Proc IEEE 67(9):1196–1207
Lee D, Lau F, Quan H (2010) A method for encoding clinical datasets with SNOMED CT. BMC Med Inform Decis Mak 10(1):53
Mccray A, Lee K (2013) Taxonomic change as a reflection of progress in a scientific discipline. In: Küppers B-O, Hahn U, Artmann S (eds) Evolution of semantic systems. Springer, Berlin, pp 189–208
Miller GA (1998) Nouns in wordnet. In: Felbaum C (ed) WordNet: an electronic lexical database. MIT, Cambridge, MA, pp 24–25
Montague R (1974) Formal philosophy; selected papers of Richard Montague. In: Thomason R (ed) Yale University Press, New Haven, CT
Rector AL, Brandt S (2008) Why do it the hard way? The case for an expressive description logic for SNOMED. J Am Med Inform Assoc 15(6):744–751
Salton G (1968) Automatic information organization and retrieval. McGraw-Hill, New York, NY
Salton G, Wong A, Yang CS (1975) Vector-space model for automatic indexing. Commun ACM 18(11):613–620
Scamardella JM (2010) Not plants or animals: a brief history of the origin of Kingdoms Protozoa, Protista and Protoctista. Int Microbiol 2(4):207–216
Shneiderman B (1992) Tree visualization with tree-maps: 2-d space-filling approach. ACM Trans Graph (TOG) 11(1):92–99
Simonet M, Messai R, Diallo G, Simonet A (2009) Ontologies in the health field. In: Berka P, Rauch J, Zighed DA (eds) Data mining and medical knowledge management: cases and applications. Medical Information Science Reference, New York, pp 37–56
Studer R, Benjamins VR, Fensel D (1998) Knowledge engineering: principles and methods. Data Knowledge Eng 25(1–2):161–197
Thomas JJ, Cook KA (2005) Illuminating the path: the research and development agenda for visual analytics. IEEE Comput Soc Press, New York
Xie S, Helfert M, Lugmayr A, Heimgärtner R, Holzinger A (2013) Influence of organizational culture and communication on the successful implementation of information technology in hospitals. In: Rau PLP (ed) Cross-cultural design. Cultural differences in everyday life. Lecture notes in computer science, LNCS 8024. Springer, Berlin, pp 165–174
Zhang S, Bodenreider O (2006) Law and order: assessing and enforcing compliance with ontological modeling principles in the Foundational Model of Anatomy. Comput Biol Med 36(7–8):674–693
Author information
Authors and Affiliations
1 Supplementary Materials
Below is the link to the electronic supplementary material.
Rights and permissions
Copyright information
© 2014 Springer International Publishing Switzerland
About this chapter
Cite this chapter
Holzinger, A. (2014). Lecture 3 Structured Data: Coding and Classification. In: Biomedical Informatics. Springer, Cham. https://doi.org/10.1007/978-3-319-04528-3_3
Download citation
DOI: https://doi.org/10.1007/978-3-319-04528-3_3
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-319-04527-6
Online ISBN: 978-3-319-04528-3
eBook Packages: EngineeringEngineering (R0)