Abstract
We present a novel method for global diffeomorphic phase alignment of time-series data from resting-state functional magnetic resonance imaging (rsfMRI) signals. Additionally, we propose a multidimensional, continuous, invariant functional representation of brain time-series data and solve a general global cost function that brings both the temporal rotations and phase reparameterizations in alignment. We define a family of cost functions for spatiotemporal warping and compare time-series warps across them. This method achieves direct alignment of time-series, allows population analysis by aligning time-series activity across subjects and shows improved global correlation maps, as well as z-scores from independent component analysis (ICA), while showing new information exploited by phase alignment that was not previously recoverable.
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References
Beckmann, C.F., Smith, S.M.: Probabilistic independent component analysis for functional magnetic resonance imaging. IEEE Trans. Med. Imaging 23(2), 137–152 (2004)
Glasser, M.F., Sotiropoulos, S.N., Wilson, J.A., Coalson, T.S., Fischl, B., et al.: The minimal preprocessing pipelines for the human connectome project. Neuroimage 80, 105–124 (2013)
Goryn, D., Hein, S.: On the estimation of rigid body rotation from noisy data. IEEE Trans. Pattern Anal. Mach. Intell. 17(12), 1219–1220 (1995)
Haxby, J.V., et al.: A common, high-dimensional model of the representational space in human ventral temporal cortex. Neuron 72(2), 404–416 (2011)
Joshi, A.A., Chong, M., Li, J., Choi, S., Leahy, R.M.: Are you thinking what I’m thinking? Synchronization of resting fMRI time-series across subjects. NeuroImage 172, 740–752 (2018)
Lee, D.S., Leaver, A.M., Narr, K.L., Woods, R.P., Joshi, S.H.: Measuring brain connectivity via shape analysis of fMRI time courses and spectra. In: Wu, G., Laurienti, P., Bonilha, L., Munsell, B.C. (eds.) CNI 2017. LNCS, vol. 10511, pp. 125–133. Springer, Cham (2017). https://doi.org/10.1007/978-3-319-67159-8_15
Lee, D.S., Loureiro, J., Narr, K.L., Woods, R.P., Joshi, S.H.: Elastic registration of single subject task based fMRI signals. In: Frangi, A.F., Schnabel, J.A., Davatzikos, C., Alberola-López, C., Fichtinger, G. (eds.) MICCAI 2018. LNCS, vol. 11072, pp. 154–162. Springer, Cham (2018). https://doi.org/10.1007/978-3-030-00931-1_18
Lohit, S., Wang, Q., Turaga, P.: Temporal transformer networks: joint learning of invariant and discriminative time warping. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 12426–12435 (2019)
Nenning, K.H., Liu, H., Ghosh, S.S., Sabuncu, M.R., Schwartz, E., Langs, G.: Diffeomorphic functional brain surface alignment: functional demons. NeuroImage 156, 456–465 (2017)
Nunez, E., Joshi, S.H.: Deep learning of warping functions for shape analysis. In: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition Workshops, pp. 866–867 (2020)
Robinson, E.C., et al.: MSM: a new flexible framework for multimodal surface matching. Neuroimage 100, 414–426 (2014)
Smith, S.M., et al.: Functional connectomics from resting-state fMRI. Trends Cogn. Sci. 17(12), 666–682 (2013)
Weber, R.A.S., Eyal, M., Skafte, N., Shriki, O., Freifeld, O.: Diffeomorphic temporal alignment nets. In: Advances in Neural Information Processing Systems, pp. 6574–6585 (2019)
Acknowledgments
This research was partially supported by the NIH/NIAAA awards K25AA024192 and R01-AA026834. Data acquisition and processing was also supported by NIH/NIMH award U01MH11000.
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Lee, D.S., Sahib, A., Narr, K., Nunez, E., Joshi, S. (2020). Global Diffeomorphic Phase Alignment of Time-Series from Resting-State fMRI Data. In: Martel, A.L., et al. Medical Image Computing and Computer Assisted Intervention – MICCAI 2020. MICCAI 2020. Lecture Notes in Computer Science(), vol 12267. Springer, Cham. https://doi.org/10.1007/978-3-030-59728-3_51
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DOI: https://doi.org/10.1007/978-3-030-59728-3_51
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