Abstract
From the contemporary perspective, the human organism should be viewed as the most complex “superorganism”, a symbiotic community of eukaryotic, prokaryotic cells including archaebacteria, and viruses (Ugolev 1991, Lederberg 2000). The microbial component of this community is represented by the aggregate of sets of microbiocenoses characterized by a definite composition and occupying the respective biotope in the human organism which is open to the environment (skin, nasopharynx, mouth cavity, respiratory and gastrointestinal tracts, genitourinary system mucosa). In any microbiocenosis one can distinguish widespread species, the so-called characteristic or dominating (core) species (autochthonous, indigenous symbiotic microbiota) and additional or accidental species (transitory allochthonous microbiota). The number of characteristic species is relatively not too big, but to make up for it, they are always well-represented. The “metagenome” of this “superorganism” consists of the Homo sapiens genes proper and the genes of microorganisms colonizing human body. The genome of every human being is quite stable (except for the changes in genes related to the immune system, the metabolism of various dietary substrates or xenobiotic destruction, neoplasms); the microbiome, on the other hand, undergoes rather profound changes in the course of a lifetime (Gilbert et al. 2016).
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Bibliography
Bik EM, Ugalde JA, Cousins J, Goddard AD, Richman J, Apte ZS. Microbial biotransformations in the human distal gut. British J Pharmacology. 2018;175(24):4404–4414. doi:https://doi.org/10.1111/bph.14085.
Blum HE. The human microbiome. Advan Med Science. 2017;62:414–420. doi:https://doi.org/10.1016/j.advms.2017.04.005.
Braune A, Blaut M. Bacterial species involved in the conversion of dietary flavonoids in the human gut. Gut microbes. 2016;7:216–234. doi:https://doi.org/10.1080/19490976.2016.1158395.
Cani PD, Delzenne NM. Gut microflora as a target for energy and metabolic homeostasis. Curr Opin Clin Nutr Metab Care. 2007;10(6):729–734. doi:https://doi.org/10.1097/MCO.0b013e3282efdebb.
Carding S, Verbeke K, Vipond DT, Corfe BM, Owen LJ. Dysbiosis of the gut microbiota in disease. Microb Ecol Health Dis. 2015;26:26191. doi:https://doi.org/10.3402/mehd.v26.26191.
Charbonneau MR, Blanton LV, Di Giulio DB, Relan DA, Lebrilla CB, Mills DA, Gordon JI. A microbial perspective of human developmental biology. Nature. 2016;535:48–55. doi:https://doi.org/10.1038/nature18845.
Chernevskaya EA, Beloborodova NV. Gut microbiome in critical illness (Review). General Reanimatology. 2018;14(5):96–119. https://doi.org/10.15360/1813-9779-2018-5-96-119.
Chervinets YuV, Chervinets VM, Shenderov BA. The modern view on the biotechnological potential of human symbiotic microbiota. Upper Volga medical journal. 2018;17(1):19–26 (in Russian).
Dietert RR, Dietert JM. The microbiome and sustainable healthcare. Healthcare. 2015;3:100–129. doi:https://doi.org/10.3390/healthcare3010100.
Donaldson GP, Lee SM, Mazmanian SK. Gut biogeography of the bacterial microbiota. Nat Rev Microbiol. 2016;14(1):20–32. doi:https://doi.org/10.1038/nrmicro3552.
Dorrestein PC, Mazmanian SK, Knight R. Finding the missing links among metabolites, microbes, and the host. Immunity. 2014;40:824–832. doi:https://doi.org/10.1016/j.immuni.2014.05.015.
Faith JJ, Guruge JL, Charbonneau M, Subramanian S, Seedorf H et al. The long-term stability of the human gut microbiota. Science. 2013;341(6141):1237439. doi:https://doi.org/10.1126/science.1237439.
Falony G, Joossens M, Vieira-Silva S, Wang J, Darzi Y et al. Population-level analysis of gut microbiome variation. Science. 2016;352(6285):560–564. doi:https://doi.org/10.1126/science.aad3503.
Franzosa EA, Huang K, Meadow JF, Gevers D, Lemon KP et al. Identifying personal microbiomes using metagenomic codes. Peoc Natl Acad Sci. 2015;112:2930–8. doi:https://doi.org/10.1073/pnas.1423854112.
Freitas M, Tavan E, Cayuela C et al. Host-pathogens cross-talk. Indigenous bacteria and probiotics also play the game. Biol Cell. 2003;95(8):503–506.
Gao D, Gao Z, Zhu G. Antioxidant effects of Lactobacillus plantarum via activation of transcription factor Nrf2. Food Funct. 2013;4:982–989.
Gilbert JA, Quinn RA, Debelius J, Morton J, Garg N et al. Microbiome-wide association studies link dynamic microbial consortia to disease. Nature. 2016;535:94–103. doi:https://doi.org/10.1038/nature18850.
Ilinskaya ON, Ulyanova VV, Yarullina DR, Gataullin IG. Secretome of intestinal Bacilli; a nature guard against pathologies. Front Microbiol. 2017;8:1666. doi:https://doi.org/10.3389/fmicb.2017.01666.
Lagier JC, Million M, Hugon P, Armougom F, Raoult D. Human gut microbiota: repertoire and variations. Front Cell Infect Microbiol. 2012;2:136. doi:https://doi.org/10.3389/fcimb.2012.00136.
Lederberg J. Infectious history. Science. 2000;288(5464):287–293. doi:https://doi.org/10.1126/science.288.5464.287.
Lyu Q, Hsu C-C. Can diet influence our health by altering intestinal microbiota-derived fecal metabolites? mSystems. 2018;3(2):e00187–17. doi:https://doi.org/10.1128/mSystems.00187-17.
Maguire M, Maguire G. Gut dysbiosis, leaky gut, and intestinal epithelial proliferation in neurological disorders: towards the development of a new therapeutic using amino acids, prebiotics, probiotics, and postbiotics. Rev Neurosci. 2019;30(2):179–201. doi:https://doi.org/10.1515/revneuro-2018-0024.
Meisel JC, Grice EA. The human microbiome. Chapter 4. In: Ginsburg G, Willard H, editors. Genomic and Precision Medicine (Third Edition). Elsevier Inc; 2017. p. 63–77. doi:https://doi.org/10.1016/B978-0-12-800681-8.00004-9.
Mimee M, Citorik RJ, Lu TK. Microbiome therapeutics-Advances and challenges. Adv Drug Deliv Rev. 2016;105(Pt A):44–54. doi:https://doi.org/10.1016/j.addr.2016.04.032.
Nicholson JK, Holmes E, Kinross J, Gibson G, Jia W, Pettersson S. Host-Gut microbiota metabolic interactions. Science. 2012;336(6086):1262–1267. doi:https://doi.org/10.1126/science.1223813.
Proal AD, Lindseth IA, Marshall TG. Microbe-Microbe and Host-Microbe Interactions Drive Microbiome Dysbiosis and Inflammatory Processes. Discovery Medicine. 2017;23(124):51–60.
Sitkin SI, Tkachenko EI, Vakhitov TYa. Phylo-metabolic nucleus of an intestinal microbiota. Almanac of clinical medicine. 2015;40:12–34 (in Russian).
Sonnenburg JL, Backhed F. Diet-microbiota interactions as moderators of human metabolism. Nature. 2016;535(7610):56–64. doi:https://doi.org/10.1038/nature18846.
Suvorov A. Gut microbiota, probiotics, and human health. Bioscience of Microbiota, Food and Health. 2013;32(3):81–91. doi:https://doi.org/10.12938/bmfh.32.81.
The Human Microbiome Project Consortium. Structure, function and diversity of the healthy human microbiome. Nature. 2012;486(7402):207–214. doi:https://doi.org/10.1038/nature11234.
Ugolev AM. Theory of adequate nutrition and trophology. Leningrad: Nauka; 1991. (in Russian).
Vakhitov TYa, Sitkin SI. The concept of superorganism in biology and medicine. Experimental & clinical gastroenterology. 2014;107(7):72–85 (in Russian).
Voreades N, Kozil A, Weir TL. Diet and the development of the human intestinal microbiome. Front Microbiol. 2014;5:1–9. doi:https://doi.org/10.3389/fmicb.2014.00494.
Yadav M, Verma MK, Chauhan NS. A review of metabolic potential of human gut microbiome in human nutrition. Arch Microbiol. 2018;200(2):203–217. doi:https://doi.org/10.1007/s00203-017-1459-x.
Zhernakova A, Kurilshikov A, Bonder MJ, Tigchelaar EF, Schirmer M et al. Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity. Science. 2016;352(6285):565–569. doi:https://doi.org/10.1126/science.aad3369.
Author information
Authors and Affiliations
Rights and permissions
Copyright information
© 2020 Springer Nature Switzerland AG
About this chapter
Cite this chapter
Shenderov, B.A., Sinitsa, A.V., Zakharchenko, M.M., Lang, C. (2020). The Composition and Functions of Human Gut Symbiotic Microbiota. In: METABIOTICS. Springer, Cham. https://doi.org/10.1007/978-3-030-34167-1_2
Download citation
DOI: https://doi.org/10.1007/978-3-030-34167-1_2
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-030-34166-4
Online ISBN: 978-3-030-34167-1
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)