Abstract
Physical and chemical mutagens induce frank breaks in DNA which reduce its single-strand molecular weight. Other nonbreak lesions in the DNA can often be converted into strand breaks by chemical and enzymatic means. Using agarose gel electrophoresis along with various cleavage schemes, the average density of breaks and various lesion classes along mammalian DNA can be determined.
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References
Boiteux, S. (1993). Properties and biological functions of the NTH and FPG proteins of Escherichia coli: Two DNA glycosylases that repair oxidative damage in DNA. J. Photochem. Photobiol. 19:87–96.
Broude, N. E., and Budowsky, E. I. (1971). The reaction of glyoxal with nucleic acid components. III. Kinetics of the reaction with monomers. Biochim. Biophys. Acta 254:380–388.
Carmichael, G. G., and McMaster, G. K. (1980). The analysis of nucleic acids in gels using glyoxal and acridine orange. Methods Enzymol. 65:380–391.
Doetsch, P. W., and Cunningham, R. P. (1990). The enzymology of apurinic/apyrimidinic endonucleases. Mutat. Res. 236:173–201.
Drouin, R., Rodriguez, H., Gao, S., Gebreyes, Z., O’Connor, T. R., Holmquist, G. P., and Akman, S. A. (1996). Cupric ion/ascorbate/hydrogen peroxide-induced DNA damage: DNA-bound copper ion primarily induces base modifications. Free Radical Biol. Med. (in press).
Hamer, D. H., and Thomas, C. A., Jr. (1975). The cleavage of Drosophila melanogaster DNA by restriction endonucleases. Chromosoma 49:243–255.
Holmquist, G. P. (1988). DNA sequences in G-bands and R-bands, in:Chromosomes and Chromatin (K. W. Adolph, ed.), CRC Press, Boca Raton, FL, pp. 75–121.
Hutton, J. R., and Wetmur, J. G. (1973). Effect of chemical modification on the rate of renaturation of deoxyribonucleic acid. Deaminated and glyoxalated deoxyribonucleic acid. Biochemistry 12:558–563.
Johnson, D. (1975). A new method of DNA denaturation mapping. Nucleic Acids Res. 2:2049–2054.
Kasten, F. H. (1967). Cytochemical studies with acridine orange and the influence of dye contaminants in the staining of nucleic acids. Int. Rev. Cytol. 21:141–202.
McMaster, G. K. and Carmichael, G. G. (1977). Analysis of single-and double-stranded nucleic acids on polyacrylamide and agarose gels by using glyoxal and acridine orange. Proc. Natl. Acad. Sci. USA 74:4835–4838.
Maniatis, T., Fritsch, E. F., and Sambrook, J. (1982). Molecular Cloning: A Laboratory Manual, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
Nakaya, K., Takenaka, O., Horinishi, H., and Shibata, K. (1968). Reactions of glyoxal with nucleic acids, nucleotides and their component bases. Biochim. Biophys. Acta 161:23–31.
O’Connor, T. R., and Laval, J. (1990). Isolation and structure of a cDNA expressing a mammalian 3-methyl-adenine-DNA glycosylase. EMBO J. 9:3337–3342.
Ogden, R. C., and Adams, D. A. (1987). Electrophoresis in agarose and acrylamide gels. Methods Enzymol. 152:61–87.
Pfeifer, G. P., Drouin, R., Riggs, A. D., and Holmquist, G. P. (1991). In vivo mapping of a DNA adduct at nucleotide resolution: Detection of pyrimidine (6−4) pyrimidone photoproducts by ligation-mediated polymerase chain reaction. Proc. Natl. Acad. Sci. USA 88:1374–1378.
Pfeifer, G. P., Drouin, R., Riggs, A. D., and Holmquist, G. P. (1992). Binding of transcription factors creates hot spots for UV photoproducts in vivo. Mol. Cell. Biol. 12:1798–1804.
Rigler, R. (1966). Microfluorometric characterization of intracellular nucleic acids and nucleoproteins by acridine orange. Acta Physiol. Scand. 67(Suppl. 267):1–122.
Rodriguez, H., Drouin, R., Holmquist, G. P., O’Connor, T. R., Boiteux, S., Laval, J., Doroshow, J. H., and Akman, S. A. (1995). Mapping of copper/hydrogen peroxide-induced DNA damage at nucleotide resolution in human genomic DNA by ligation-mediated PCR. J. Biol. Chem. 270:17633–17640.
Sambrook, J., Fritsch, E. F, and Maniatis, T. (1989). Molecular Cloning: A Laboratory Manual, 2nd ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
Schneider, J. E., Price, S., Maidt, L., Gutteridge, J. M. C., and Floyd, R.A. (1990). Methylene blue plus light mediates 8-hydroxy 2′-deoxyguanosine formation in DNA preferentially over strand breakage. Nucleic Acids Res. 18:631–635.
Shapiro, R., and Hachmann, J. (1966). The reaction of guanine derivatives with 1,2-dicarbonyl compounds. Biochemistry 5:2799–2807.
Shapiro, R., Cohen, B. I., Shiuey, S.-J., and Maurer, H. (1969). On the reaction of guanine with glyoxal, pyruvaldehyde, and kethoxal, and the structure of the acylguanines. A new synthesis of N2-alkylguanines. Biochemistry 8:238–245.
Shapiro, R., Cohen, B. I., and Clagett, D. C. (1970). Specific acylation of the guanine residues of ribonucleic acid. J. Biol. Chem. 245:2633–2639.
Tanford, C. (1961). Physical Chemistry of Macromolecules, Wiley, New York.
Thomas, P. S. (1980). Hybridization of denatured RNA and small DNA fragments transferred to nitrocellulose. Proc. Natl. Acad. Sci. USA 77:5201–5205.
Wallace, S.S. (1988). AP endonucleases and DNA glycosylases that recognize oxidative DNA damage. Environ. Mol. Mutagen. 12:431–477.
Willis, C. K., Willis, D. G., and Holmquist, G. P. (1988). An equation for DNA electrophoretic mobility. Appl. Theor. Electrophor. 1:11–18.
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Drouin, R., Gao, S., Holmquist, G.P. (1996). Agarose Gel Electrophoresis for DNA Damage Analysis. In: Pfeifer, G.P. (eds) Technologies for Detection of DNA Damage and Mutations. Springer, Boston, MA. https://doi.org/10.1007/978-1-4899-0301-3_3
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DOI: https://doi.org/10.1007/978-1-4899-0301-3_3
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