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Biochemical and Genetic Peculiarities and the Phylogenetic Relationship of the Non-main Subspecies in the General Scheme of the Plague Agent Evolution

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Advances in Yersinia Research

Part of the book series: Advances in Experimental Medicine and Biology ((AEMB,volume 954))

Abstract

We have completed a comparative analysis of the biochemical and genetic characteristics of Yersinia pestis strains belonging to the main (highly virulent) and non-main (selective virulence) subspecies (ssp.) to elucidate the phylogenetic relationship of the non-main ssp. in the general scheme of the plague agent evolution. It has been established that several metabolic genes such as napA (nitrate reduction), rhaS (rhamnose fermentation), melB (melibiose fermentation), and iclR (isocytrate lyase production) have undergone reductive evolution in the Y. pestis main ssp. strains but remain intact in the strains of the non-main ssp. Sequencing of the genes encoding the differential biochemical properties used for intraspecific classification of the plague agent as well as other housekeeping genes showed that the non-main ssp. strains are the most evolutionarily ancient forms of Y. pestis. Of the non-main ssp., the caucasica ssp. strains are the most ancient, lacking the plasmid of pesticinogenicity pPst and containing the genes encoding wild-type differential biochemical characteristics, similar to the Yersinia pseudotuberculosis strains.

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References

  • Achtman M, Zurth K, Morelli G et al (1999) Yersinia pestis, the cause of plague, is a recently emerged clone of Yersinia pseudotuberculosis. Proc Natl Acad Sci USA 96:14043–14048

    Article  PubMed  CAS  Google Scholar 

  • Achtman M, Morelli G, Zhu P et al (2004) Microevolution and history of the plague bacillus, Yersinia pestis. Proc Natl Acad Sci, USA 101:17837–17842

    Article  PubMed  CAS  Google Scholar 

  • Bobrov AG, Filippov AA (1997) Distribution of IS285 and IS100 in the Yersinia pestis and Yersinia pseudotuberculosis genomes. Mol Gen Mikrobiol Virusol 2:36–40

    PubMed  Google Scholar 

  • Brubaker RR (1991) Factors promoting acute and chronic diseases caused by yersiniae. Clin Microbiol Rev 4:309–324

    PubMed  CAS  Google Scholar 

  • Brubaker RR (2004) The recent emergence of plague: a process of felonious evolution. Microb Ecol 47:293–299

    Article  PubMed  CAS  Google Scholar 

  • Chain PS, Carniel E, Larimer FW et al (2004) Insights into the evolution of Yersinia pestis through whole-genome comparison with Yersinia pseudotuberculosis. Proc Nat Acad Sci USA 101:13826–13831

    Article  PubMed  CAS  Google Scholar 

  • Cui Y, Li Y, Gorge O et al (2008) Insight into microevolution of Yersinia pestis by clustered regularly interspaced short palindromic repeats. PloS One 3(7): e2652

    Article  Google Scholar 

  • Deng W, Burland V, Plunkett G 3rd et al (2002) Genome sequencing of Yersinia pestis KIM. J Bacteriol 184:4601–4611

    Article  Google Scholar 

  • Devignat R (1951) Variétiés de l’espèce Pasteurella pestis. Bull World Health Organ 4:247–263

    PubMed  CAS  Google Scholar 

  • Eppinger M, Worsham PL, Nicolich MP et al (2010) Genome sequence of the deep-rooted Yersinia pestis strain Angola reveals new insight into the evolution and pangenome of the plague bacterium. J Bacteriol 192:1685–1699

    Article  PubMed  CAS  Google Scholar 

  • Eroshenko GA, Vidyaeva NA, Odinokov GN et al (2010) Structural and functional analysis of the araC gene in the strains of Yersinia pestis of different origin. Mol Gen Mikrobiol Virusol 3:21–25

    PubMed  Google Scholar 

  • Eroshenko GA, Kookleva LM, Odinokov GN et al (2010) The method of intraspecific differentiation of the plague agent strains by sequencing. Patent RU 2404256, Russian Federation, published 20-11-2010, Bull 32

    Google Scholar 

  • Eroshenko GA, Odinokov GN, Kookleva LM et al (2011) Structural analysis of genes participating in melibiose fermentation and isocytrate lyase production in Yersinia pestis strains of the main and non-main ­subspecies. Rus J Genet 47:1181–1187

    Article  CAS  Google Scholar 

  • Koukleva LM, Eroshenko GA, Kouklev VE et al (2008) A study of the nucleotide sequence variability of rha locus genes of Yersinia pestis main and non-main subspecies. Mol Gen Mikrobiol Virusol 2:23–27

    Google Scholar 

  • Kutyrev VV, Protsenko OA (1998) Classification and the molecular-genetic studies of Yersinia pestis. Probl Osobo Opasn Infek 1:11–12

    Google Scholar 

  • Li Y, Dai E, Cui Y et al (2008) Different region analysis for genotyping Yersinia pestis isolates from China. PloS One. 3(5):e2166

    Google Scholar 

  • Martinevskii IL (1969) Biology and genetic features of plague and plague-related microbes. Meditsina, Moscow

    Google Scholar 

  • Morelli G, Ya S, Mazzoni C et al (2010) Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity. Nature Genet. doi:10.1038/ng/705

  • Motin VL, Georgescu AM, Elliot JM et al (2002) Genetic variability of Yersinia pestis isolates as predicted by IS100 genotyping and analysis of structural genes encoding glycerol-3-phosphate dehydrogenase (glpD). J Bacteriol 184:1019–1027

    Article  PubMed  CAS  Google Scholar 

  • Odinokov GN, Eroshenko GA, Vidyaeva NA et al (2008) Structural and functional analysis of the genes of the nap operon of the Yersinia pestis strains of different subspecies. Probl Osobo Opasn Infek 4:12–16

    Google Scholar 

  • Odinokov GN, Eroshenko GA, Pavlova AI et al (2010) The method of differentiation of the plague agent strains of the main and non-main subspecies by polymerase chain reaction. Patent RU 2425891, Russian Federation, published 10-08-2010, Bull. 22

    Google Scholar 

  • Odinokov GN, Eroshenko GA, Koukleva LM et al (2012) Determination of genetic bases of auxotrophy in Yersinia pestis ssp. caucasica strains. Rus J Genet 48:376–382

    Google Scholar 

  • Onischenko GG, Kutyrev VV (2004) Natural plague foci in the Caucasus, Caspian Sea Region, Middle Asia and Siberia. Meditsina, Moscow

    Google Scholar 

  • Parkhill J, Wren BW, Thomson NR et al (2001) Genome sequence of Yersinia pestis, the causative agent of plague. Nature 413:523–527

    Article  PubMed  CAS  Google Scholar 

  • Wren BW (2004) The Yersiniae—a model genus to study the rapid evolution of bacterial pathogens. Nat Rev Microbiol 1:55–64

    Article  Google Scholar 

  • Zhou D, Tong Z, Ya S et al (2004) Genetics of metabolic variations between Yersinia pestis biovars and the proposal of a new biovar, microtus. J Bacteriol 186: 5147–5152

    Article  PubMed  CAS  Google Scholar 

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Correspondence to Galina A. Eroshenko .

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Eroshenko, G.A., Kutyrev, V.V. (2012). Biochemical and Genetic Peculiarities and the Phylogenetic Relationship of the Non-main Subspecies in the General Scheme of the Plague Agent Evolution. In: de Almeida, A., Leal, N. (eds) Advances in Yersinia Research. Advances in Experimental Medicine and Biology, vol 954. Springer, New York, NY. https://doi.org/10.1007/978-1-4614-3561-7_6

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