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Abstract

It is scarcely more than ten years since we first learned of the fold of a viral protein. The structures of tobacco mosaic virus, by fiber diffraction at 4-Å resolution (Stubbs et al., 1977), and tomato bushy stunt virus by crystallography at 2.9 Å (Harrison et al., 1978) were very different from each other, and at that time it might have been expected that further work would lead only to an ever-increasing array of unrelated structures. In fact, virus structures determined since then have shown a considerable range of variation, but on a suprisingly limited number of themes. In particular, all the spherical viruses whose structures have been determined by crystallography until now have been shown to be related to the original example of bushy stunt virus, even in cases where there is no similarity in amino acid sequence, serology, or host range. At present, there are only three known basic virus coat protein folds: the β barrel of the spherical viruses, the α-helix bundle of the rod-shaped tobamoviruses, and the interleaved α helices of the filamentous bacteriophages. This is not to imply that no more will be found; it does, however, suggest that a few viruses have shown a remarkable capacity to adapt and evolve.

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Abbreviations

AMV:

alfalfa mosaic virus

BBV:

black beetle virus

BSMV:

barley stripe mosaic virus

CpMV:

cowpea mosiac virus

CGMMV-W:

cucumber green mottle mosaic virus, watermelon strain

HRV:

human rhinovirus

SBMV:

southern bean mosaic virus

STNV:

satellite tobacco necrosis virus

TBSV:

tomato bushy stunt virus

TCV:

turnip crinkle virus

TMV:

tobacco mosaic virus

TRV:

tobacco rattle virus

References

  • Abad-Zapatero, C., Abdel-Meguid, S. S., Johnson, J. E., Leslie, A. G. W., Rayment, I., Rossmann, M. G., Suck, D., and Tsukihara, T., 1980, Structure of southern bean mosaic virus at 2.8Å resolution, Nature 286:33–39.

    Article  PubMed  CAS  Google Scholar 

  • Abdel-Meguid, S. S., Yamane, T., Fukuyama, K., and Rossmann, M. G., 1981, The location of calcium ions in southern bean mosaic virus, Virology 114:81–85.

    Article  PubMed  CAS  Google Scholar 

  • Akusjärvi, G., Aleström, P., Pettersson, M., Lager, M., and Jörvall, H., 1984, The gene for the adenovirus 2 hexon polypeptide, J. Biol. chem. 259:13976–13979.

    PubMed  Google Scholar 

  • Argos, P., 1981, Secondary structure prediction of plant virus coat proteins, Virology 110:55–62.

    Article  PubMed  CAS  Google Scholar 

  • Argos, P., and Johnson, J. E., 1984, Chemical stability in simple plant viruses, in: Biological Macromolecules and Assemblies. Volume I: Virus Structures (F. A. Jurnak and A. McPherson, eds.), pp. 1–43, Wiley, New York.

    Google Scholar 

  • Argos, P., Tsukihara, T., and Rossmann, M. G., 1980, A structural comparison of concanavalin A and tomate bushy stunt virus protein, J. Mol. Evol. 15:169–179.

    Article  PubMed  CAS  Google Scholar 

  • Baker, T. S., Caspar, D. L. D., and Murakami, W. T., 1983, Polyoma virus “hexamer” tubes consist of paired pentamers, Nature 303:446–448.

    Article  PubMed  CAS  Google Scholar 

  • Baker, T. S., Drak, J., and Bina, M., 1988, Reconstruction of the three-dimensional structure of simian virus 40 and visualization of the chromatin core, Proc. Natl. Acad. Sci. U.S.A. 85:422–426.

    Article  PubMed  CAS  Google Scholar 

  • Bancroft, J. B., 1970, The self-assembly of spherical plant viruses, Adv. Virus Res. 16:99–134.

    Article  PubMed  CAS  Google Scholar 

  • Banner, D. W., Nave, C., and Marvin, D. A., 1981, Structure of the protein and DNA in fd filamentous bacterial virus, Nature 289:814–816.

    Article  PubMed  CAS  Google Scholar 

  • Bawden, F. C., Pirie, N. W., Bernal, J. D., and Fankuchen, I., 1936, Liquid crystalline substances from virus-infected plants, Nature 138:1051–1052.

    Article  Google Scholar 

  • Bernal, J. D., and Fankuchen, I., 1941, X-ray and crystallographic studies of plant virus preparations, J. Gen. Physiol. 25:111–165.

    Article  PubMed  CAS  Google Scholar 

  • Bernal, J. D., Fankuchen, I., and Riley, D. P., 1938, Structure of the crystals of tomato bushy stunt virus preparations, Nature 142:1075.

    Article  CAS  Google Scholar 

  • Bloomer, A. C., Champness, J. N., Bricogne, G., Staden, R., and Klug, A., 1978, Protein disk of tobacco mosaic virus at 2.8Å resolution showing the interactions within and between subunits, Nature 276:362–368.

    Article  PubMed  CAS  Google Scholar 

  • Bricogne, G., 1976, Methods and programs for direct-space exploitation of geometric redundancies, Acta Crystallogr. A32:832–847.

    CAS  Google Scholar 

  • Bryan, R. K., Bansal, M., Folkhard, W., Nave, C., and Marvin, D. A., 1983, Maximum-entropy calculation of the electron density at 4Å resolution of Pf1 filamentous bacteriophage, Proc. Natl. Acad. Sci. U.S.A. 80: 4728–4731.

    Article  PubMed  CAS  Google Scholar 

  • Burnett, R. M., 1984, Structural investigations of hexon, the major coat protein of adenovirus, in: Biological Macromolecules and Assemblies, Volume I: Virus Structures (F. A. Jumak and A. McPherson, eds.), pp. 337–385, Wiley, New York.

    Google Scholar 

  • Burnett, R. M., 1985, The structure of the adenovirus capsid. II. The packing symmetry of hexon and its implications for viral architecture, J. Mol. Biol. 185:125–143.

    Article  PubMed  CAS  Google Scholar 

  • Casjens, S., 1985, Nucleic acid packaging by viruses, in: Virus Structure and Assembly (S. Casjens, ed.), pp. 75–147, Jones and Bartlett, Boston.

    Google Scholar 

  • Caspar, D. L. D., 1956, Structure of bushy stunt virus, Nature 177:475–476.

    Article  PubMed  CAS  Google Scholar 

  • Caspar, D. L. D., 1963, Assembly and stability of the tobacco mosaic virus particle, Adv. Protein Chem. 18: 37–121.

    Article  PubMed  CAS  Google Scholar 

  • Caspar, D. L. D., 1976, Switching in the self-control of self-assembly, in: Structure-Function Relationships of Proteins (R. Markham and R. W. Horne, eds.), pp. 85–89, North Holland, Amsterdam.

    Google Scholar 

  • Caspar, D. L. D., and Klug, A., 1962, Physical principles in the construction of regular viruses, Cold Spring Harbor Symp. Quant. Biol. 27:1–24.

    PubMed  CAS  Google Scholar 

  • Cepko, C. L., and Sharp, P. A., 1982, Assembly of adenovirus major capsid protein is mediated by a nonviral protein, Cell 31:407–415.

    Article  PubMed  CAS  Google Scholar 

  • Colman, P. M., Tulloch, P. A., Shukla, D. D., and Gough, K. H., 1980, Particle and crystal symmetry of erysimum latent virus, J. Mol. Biol. 142:263–268.

    Article  PubMed  CAS  Google Scholar 

  • Colman, P. M., Varghese, J. N., and Laver, W. G., 1983, Structure of the catalytic and antigenic sites in influenza virus neuraminidase, Nature 303:41–44.

    Article  PubMed  CAS  Google Scholar 

  • Compans, R. W., Content, J., and Duesberg, P. H., 1972, Structure of the ribonucleoprotein of influenza virus, J. Virol. 10:795–800.

    PubMed  CAS  Google Scholar 

  • Correia, J. J., Shire, S., Yphantis, D. A., and Schuster, T. M., 1985, Sedimentation equilibrium measurements of the intermediate-size tobacco mosaic virus protein polymers, Biochemistry 24:3292–3297.

    Article  PubMed  CAS  Google Scholar 

  • Crick, F. H. C., and Watson, J. D., 1956, Structure of small viruses, Nature 177:473–475.

    Article  PubMed  CAS  Google Scholar 

  • Cross, T. A., Tsang, P., and Opella, S. J., 1983, Comparison of protein and deoxyribonucleic acid backbone structures in fd and Pf1 bacteriophages, Biochemistry 22:721–726.

    Article  PubMed  CAS  Google Scholar 

  • Durham, A. C. H., Hendry, D. A., and Von Wechmar, M. B., 1977, Does calcium ion binding control plant virus disassembly? Virology 77:524–533.

    Article  PubMed  CAS  Google Scholar 

  • Einspahr, H., Parks, E. H., Suguna, K., Subramanian, E., and Suddath, F. L., 1986, The crystal structure of pea lectin at 3.0Å resolution, J. Biol. Chem. 261:16518–16527.

    PubMed  CAS  Google Scholar 

  • Erickson, J. W., and Rossmann, M. G., 1982, Assembly and crystallization of a T = 1 icosahedral particle from trypsinized southern bean mosaic virus coat protein, Virology 116:128–136.

    Article  PubMed  CAS  Google Scholar 

  • Erickson, J. W., Silva, A. M., Murthy, M. R. N., Fita, I., and Rossmann, M. G., 1985, The structure of a T = 1 icosahedral empty particle from southern bean mosaic virus, Science 229:625–629.

    Article  PubMed  CAS  Google Scholar 

  • Finch, J. T., 1965, Preliminary x-ray diffraction studies on tobacco rattle and barley stripe mosaic viruses, J. Mol. Biol. 12:612–619.

    Article  CAS  Google Scholar 

  • Finch, J. T., and Gibbs, A. J., 1970, Image reconstruction in projection of the nucleocapsid from Sendai, J. Gen. Virol. 6:141–150.

    Article  PubMed  CAS  Google Scholar 

  • Finch, J. T., and Klug, A., 1959, Structure of poliomyelitis virus, Nature 183:1709–1714.

    Article  PubMed  CAS  Google Scholar 

  • Fox, G., Stuart, D., Acharya, K. R., Fry, E., Rowlands, D., and Brown, F., 1987, Crystallization and preliminary x-ray diffraction analysis of foot-and-mouth disease virus, J. Mol. Biol. 196:591–597.

    Article  PubMed  CAS  Google Scholar 

  • Franklin, R. E., 1956, X-ray diffraction studies of cucumber virus 4 and three strains of tobacco mosaic virus, Biochim. Biophys. Acta 19:203–211.

    Article  PubMed  CAS  Google Scholar 

  • Fukuyama, K., Abdel-Meguid, S. S., Johnson, J. E., and Rossmann, M. G., 1983, Structure of a T = I aggregate of alfalfa mosaic virus coat protein seen at 4.5Å resolution, J. Mol. Biol. 167:873–894.

    Article  PubMed  CAS  Google Scholar 

  • Glucksman, M. J., Stubbs, G., and Makowski, L., 1987, X-ray fiber diffraction studies of filamentous bacteriophage M13 protein structure, Ann. N.Y. Acad. Sci. 494:403–406.

    Article  Google Scholar 

  • Goelet, P., Lomonossoff, G. P., Butler, P. J. G., Akam, M. E., Gait, M. J., and Karn, J., 1982, Nucleotide sequence of tobacco mosaic virus RNA, Proc. Natl. Acad. Sci. U.S.A. 79:5818–5822.

    Article  PubMed  CAS  Google Scholar 

  • Harrison, S. C., Olson, A. J., Schutt, C. E., Winkler, F. K., and Bricogne, G., 1978, Tomato bushy stunt virus at 2.9Å resolution, Nature 276:368–373.

    Article  PubMed  CAS  Google Scholar 

  • Henriksson, D., Tanis, R. J., Tashian, R. E., and Nyman, P. O., 1981, Amino acid sequence of the coat protein subunit in satellite tobacco necrosis virus, J. Mol. Biol. 152:171–179.

    Article  PubMed  CAS  Google Scholar 

  • Hermodson, M. A., Abad-Zapatero, C., Abdel-Meguid, S. S., Pundak, S., Rossmann, M. G., and Tremaine, J. H., 1982, Amino acid sequence of southern bean mosaic virus coat protein and its relation to the three-dimensional structure of the virus, Virology 119:133–149.

    Article  PubMed  CAS  Google Scholar 

  • Heuss, K. L., MohanaRao, J. K., and Argos, P., 1981a, Crystallization of belladonna mottle virus, J. Mol. Biol. 146:629–633.

    Article  PubMed  CAS  Google Scholar 

  • Heuss, K. L., MohanaRao, J. K., and Argos, P., 1981b, Crystallization of cowpea chlorotic mottle virus, J. Mol. Biol. 146:635–640.

    Article  PubMed  CAS  Google Scholar 

  • Heuss, K. L., Murthy, M. R. N., and Argos, P., 1981c, Crystallization of tobacco ringspot virus, J. Mol. Biol. 153:1161–1168.

    Article  PubMed  CAS  Google Scholar 

  • Hodgkin, D. C., 1949, X-ray analysis and protein structure, Cold Spring Harbor Symp. Quant. Biol. 14:65–78.

    CAS  Google Scholar 

  • Hogle, J., Kirchhausen, T., and Harrison, S. C., 1983, Divalent cation sites in tomate bushy stunt virus, J. Mol. Biol. 171:95–100.

    Article  PubMed  CAS  Google Scholar 

  • Hogle, J. M., Chow, M., and Filman, D. J., 1985, Three-dimensional structure of poliovirus at 2.9Å resolution, Science 229: 1358–1365.

    Article  PubMed  CAS  Google Scholar 

  • Hogle, J. M., Maeda, A., and Harrison, S. C., 1986, Structure and assembly of tumip crinkle virus. I. X-ray crystallographic structure analysis at 3.2Å resolution, J. Mol. Biol. 191:625-638.

    Google Scholar 

  • Holmes, K. C., and Franklin, R. E., 1958, The radial density distribution in some strains of tobacco mosaic virus, Virology 6:328–336.

    Article  PubMed  CAS  Google Scholar 

  • Hopper, P., Harrison, S. C., and Sauer, R. T., 1984, Structure of tomate bushy stunt virus: V. Coat protein sequence determination and its structural implication, J. Mol. Biol. 177:701–713.

    Article  PubMed  CAS  Google Scholar 

  • Hosur, M. V., Schmidt, T., Tucker, R. C., Johnson, J. E., Selling, B. H., and Rueckert, R. R., 1984, Black beetle virus—crystallization and particle symmetry, Virology 133: 119–127.

    Article  PubMed  CAS  Google Scholar 

  • Hosur, M. V., Schmidt, T., Tucker, R. C., Johnson, J. E., Gallagher, T. M., Selling, B. H., and Rueckert, R. R., 1987, Structure of an insect virus at 3.0Å resolution, Proteins Struct. Funct. Genet. 2:167–176.

    Article  PubMed  CAS  Google Scholar 

  • Jardetzky, O., Akasaka, K., Vogel, D., Morris, S., and Holmes, K. C., 1978, Unusual segmental flexibility in a region of tobacco mosaic virus coat protein, Nature 273:564–566.

    Article  PubMed  CAS  Google Scholar 

  • Jones, T. A., and Liljas, L., 1984, Structure of satellite tobacco necrosis virus after crystallographic refinement at 2.5Å resolution, J. Mol. Biol. 177:735–767.

    Article  PubMed  CAS  Google Scholar 

  • Klug, A., 1965, Structure of viruses of the papilloma-polyoma type. II. Comments on other work, J. Mol. Biol. 11:424–431.

    Article  PubMed  CAS  Google Scholar 

  • Leberman, R., and Longley, W., 1970, X-ray diffraction studies on crystals of the small particles, J. Mol. Biol. 50:213.

    Article  PubMed  CAS  Google Scholar 

  • Liljas, L., 1986, The structure of spherical viruses, Prog. Biophys. Mol. Biol. 48:1–36.

    Article  PubMed  CAS  Google Scholar 

  • Liljas, L., and Strandberg, B., 1984, The structure of satellite tobacco necrosis virus, in: Biological Macromolecules and Assemblies, Volume I: Virus Structures (F. A. Jurnak and A. McPherson, eds.), pp. 97–119, Wiley, New York.

    Google Scholar 

  • Liljas, L., Unge, T., Jones, T. A., Fridborg, K., Lövgren, S., Skoglund, U., and Strandberg, B., 1982, Structure of satellite tobacco necrosis virus at 3.0Å resolution, J. Mol. Biol. 159:93–108.

    Article  PubMed  CAS  Google Scholar 

  • Lobert, S., Heil, P., Namba, K., and Stubbs, G., 1987, Preliminary x-ray fiber diffraction studies of cucumber green mottle mosaic virus, watermelon strain, J. Mol. Biol. 196:935–938.

    Article  PubMed  CAS  Google Scholar 

  • Lonberg-Holm, K., 1975, The effects of concanavalin A on the early events of infection by rhinovirus type 2 and poliovirus type 2, J. Gen. Virol. 28:313–327.

    Article  PubMed  CAS  Google Scholar 

  • Luo, M., Vriend, G., Karner, G., Minor, I., Arnold, E., Rossmann, M. G., Boege, U., Scraba, D. G., Duke, G. M., and Palmenberg, A. C., 1987, The atomic structure of Mengo virus at 3.0Å resolution, Science 235:182–191.

    Article  PubMed  CAS  Google Scholar 

  • Makowski, L., 1982, The use of continuous diffraction as aphase constraint. II. Application to fiber diffraction data, J. Appl. Crystallogr. 15:546–557.

    Article  CAS  Google Scholar 

  • Makowski, L., 1984, Structural diversity in filamentous bacteriophages, in: Biological Macromolecules anti Assemblies, Volume I: Virus Structures (F. A. Jurnak and A. McPherson, eds.), pp. 203–253, Wiley, New York.

    Google Scholar 

  • Makowski, L., Caspar, D. L. D., and Marvin, D. A., 1980, Filamentous bacteriophage Pf1 structure determined at 7Å resolution by refinement of models for the α-helical subunit, J. Mol. Biol. 140:149–181.

    Article  PubMed  CAS  Google Scholar 

  • Mandelkow, E., Stubbs, G., and Warren, S., 1981, Structures of the helical aggregates of tobacco mosaic virus protein, J. Mol. Biol. 152:375–386.

    Article  PubMed  CAS  Google Scholar 

  • Marvin, D. A., 1966, X-ray diffraction and electron microscope studies on the structure of the small filamentous bacteriophage fd, J. Mol. Biol. 15:8–17.

    Article  PubMed  CAS  Google Scholar 

  • Marvin, D. A., Wiseman, R. L., and Wachtel, E. J., 1974a, Filamentous bacterial viruses. XI. Molecular architecture if the class II (Pf1, Xf) virion, J. Mol. Biol. 82:121–138.

    Article  PubMed  CAS  Google Scholar 

  • Marvin, D. A., Pigram, W. J., Wiseman, R. L., Wachtel, E. J., and Marvin, F. J., 1974b, Filamentous bacterial viruses. XII. Molecular architecture of the class I (fd, If1, IKe) virion, J. Mol. Biol. 88:581–600.

    Article  PubMed  CAS  Google Scholar 

  • Marvin, D. A., Bryan, R. K., and Nave, C., 1987, Pf1 Inovirus. Electron density distribution calculated by a maximum entropy algorithm from native fibre diffraction data to 3Å resolution and single isomorphous replacement data to 5Å resolution, J. Mol. Biol. 193:315–343.

    Article  PubMed  CAS  Google Scholar 

  • McCain, D. C., Virudachalum, R., Marldey, J. L., Abdel-Meguid, S. S., and Rossmann, M. G., 1982a, Carbon-13 NMR study of southern bean mosaic virus, Virology 117:501–503.

    Article  PubMed  CAS  Google Scholar 

  • McCain, D. C., Virudachalum, R., Santini, R. E., Abdel-Meguid, S. S., and Markley, J. L., 1982b, Phosphorus-31 nuclear magnetic resonance study of internal motion in ribonucleic acid of southern bean mosaic virus, Biochemistry 21:5390–5397.

    Article  PubMed  CAS  Google Scholar 

  • McKay, D. B., Weber, I. T., and Steitz, T. A., 1982, Structure of catabolite gene activator protein at 2.9Å resolution, J. Biol. Chem. 257:9518–9524.

    PubMed  CAS  Google Scholar 

  • McLachlan, A. D., Bloomer, A. C., and Butler, P. J. G., 1980, Structural repeats and evolution of tobacco mosaic virus coat protein and RNA, J. Mol. Biol. 136:203–224.

    Article  PubMed  CAS  Google Scholar 

  • Munowitz, M. G., Dobson, C. M., Griffin, R. G., and Harrison, S. C., 1980, On the rigidity of RNA in tomato bushy stunt virus, J. Mol. Biol. 141:327–333.

    Article  PubMed  CAS  Google Scholar 

  • Namba, K., and Stubbs, G., 1985, Solving the phase problem in fiber diffraction. Application to tobacco mosaic virus at 3.6Å resolution, Acta Crystallog. A41:252–262.

    CAS  Google Scholar 

  • Namba, K., and Stubbs, G., 1986, Structure of tobacco mosaic virus at 3.6Å resolution: Implications for assembly, Science 231:1401–1406.

    Article  PubMed  CAS  Google Scholar 

  • Nave, C., Brown, R. S., Fowler, A. G., Ladner, J. E., Marvin, D. A., Provencher, S. W., Tsugita, A., Armstrong, J., and Perham, R. N., 1981, Pf1 filamentous bacterial virus. X-ray fibre diffraction analysis of two heavy-atom derivatives, J. Mol. Biol. 149:675–707.

    Article  PubMed  CAS  Google Scholar 

  • Olson, A. J., Bricogne, G., and Harrison, S. C., 1983, Structure of tomato bushy stunt virus. IV. The virus particle at 2.9Å resolution, J. Mol. Biol. 171:61–93.

    Article  PubMed  CAS  Google Scholar 

  • Rayment, I., 1984, Animal virus structure, in: Biolagical Macromolecules and Assemblies, Volume I: Virus Structures (F. A. Jurnak and A. McPherson, eds.), pp. 255–298, Wiley, New York.

    Google Scholar 

  • Rayment, I., Baker, T. S., Caspar, D. L. D., and Murakami, W. T., 1982, Polyoma virus capsid structure at 22.5Å resolution, Nature 295:110–115.

    Article  PubMed  CAS  Google Scholar 

  • Reeke, G. N., Becker, J. W., and Edelman, G. M., 1975, The covalent and three-dimensional structure of concanavalin A. IV. Atomic coordinates, hydrogen bonding, and quaternary structure, J. Biol. Chem. 250: 1525–1547.

    PubMed  CAS  Google Scholar 

  • Richardson, J. S., 1981, The anatomy and taxonomy of protein structure, Adv. Protein Chem. 34:167–339.

    Article  PubMed  CAS  Google Scholar 

  • Roberts, M. M., White, J. L., Grütter, M. G., and Burnett, R. M., 1986, Three-dimensional structure of the adenovirus major coat protein hexon, Science 232:1148–1151.

    Article  PubMed  CAS  Google Scholar 

  • Robinson, I. K., and Harrison, S. C., 1982, Structure of the expanded state of tomato bushy stunt virus, Nature 297:563–568.

    Article  CAS  Google Scholar 

  • Rossmann, M. G., 1984, The structure of southern bean mosaic virus, in: Biological Macromolecules and Assemblies, Volume I: Virus Structures (F. A. Jumak and A. McPherson, eds.), pp. 45–96, Wiley, New York.

    Google Scholar 

  • Rossmann, M. G., Abad-Zapatero, C., Murthy, M. R. N., Liljas, L., Jones, T. A., and Strandberg, B., 1983a, Structural comparisons of some small spherical plant viruses, J. Mol. Biol. 165:711–736.

    Article  PubMed  CAS  Google Scholar 

  • Rossmann, M. G., Chandrasekaran, R., Abad-Zapatero, C., Erickson, J. W., and Arnott, S., 1983b, RNA-protein binding in southern bean mosaic virus, J. Mol. Biol. 166:73–80.

    Article  PubMed  CAS  Google Scholar 

  • Rossmann, M. G., Abad-Zapatero, C., Hermodson, M. A., and Erickson, J. W., 1983c, Subunit interactions in southern bean mosaic virus, J. Mol. Biol. 166:37–83.

    Article  PubMed  CAS  Google Scholar 

  • Rueckert, R. R., 1985, Picornaviruses and their replication, in: Virology (B. N. Fields, D. M. Knipe, R. M. Chanock, J. L. Melnick, B. Roizman, and R. E. Shope, eds.), pp. 705–738, Raven Press, New York.

    Google Scholar 

  • Savithri, H. S., and Erickson, J. W., 1983, The self-assembly of the cowpea strain of southern bean mosaic virus: Formation of T = 1 and T = 3 nucleoprotein particles, Virology 126:328–335.

    Article  PubMed  CAS  Google Scholar 

  • Silva, A. M., and Rossman, M. G., 1987, Refined structure of southern bean mosaic virus at 2.9Å resolution, J. Mol. Biol. 197:69–97.

    Article  PubMed  CAS  Google Scholar 

  • Smith, T. J., Kremer, M. J., Luo, M., Vriend, G., Arnold, E., Karner, G., Rossmann, M. G., McKinlay, M. A., Diana, G. D., and Otto, M. J., 1986, The site of attachment in human rhinovirus 14 for antiviral agents that inhibit uncoating, Science 233: 1286–1293.

    Article  PubMed  CAS  Google Scholar 

  • Sorger, P. K., Stockley, P. G., and Harrison, S. C., 1986, Structure and assembly of turnip crinkle virus. II. Mechanism of reassembly in vitro, J. Mol. Biol. 191:639–658.

    Article  PubMed  CAS  Google Scholar 

  • Stark, W., Glucksman, M. J., and Makowski, L., 1988, Conformation of the coat protein of filamentous bacteriophage Pf1 determined by neutron diffraction from magnetically oriented gels of specifically deuterated virions, J. Mol. Biol. 199:171–182.

    Article  PubMed  CAS  Google Scholar 

  • Stauffacher, C. V., Usha, R., Harrington, M., Schmidt, T., Hosur, M. V., and Johnson, J. E., 1987, The structure of cowpea mosaic virus at 3.5Å resolution, in: Crystallography in Molecular Biology (D. Moras, J. Drenth, B. Strandberg, D. Suck, and K. Wilson, eds.), pp. 293–308, Plenum, New York.

    Google Scholar 

  • Steckert, J. J., and Schuster, T. M., 1982, Sequence specificity of trinucleoside diphosphate binding to polymerized tobacco mosaic virus protein, Nature 299:32–36.

    Article  PubMed  CAS  Google Scholar 

  • Stubbs, G., 1984, Macromolecular interactions in tobacco mosaic virus, in: Biological Macromolecules anti Assemblies, Volume I: Virus Structures (F. A. Jurnak and A. McPherson, eds.), pp. 149–202, Wiley, New York.

    Google Scholar 

  • Stubbs, G., and Diamond, R., 1975, The phase problem for cylindrically averaged diffraction patterns. Solution by isomorphous replacement and application to tobacco mosaic virus, Acta Crystallogr. A31:709–718.

    CAS  Google Scholar 

  • Stubbs, G., and Stauffacher, C., 1981, Structure of the RNA in tobacco mosaic virus, J. Mol. Biol. 152:387–396.

    Article  PubMed  CAS  Google Scholar 

  • Stubbs, G., Warren, S., and Holmes, K., 1977, Structure of RNA and RNA binding site in tobacco mosaic virus from a 4Å map calculated from x-ray fibre diagrams, Nature 267:216–221.

    Article  PubMed  CAS  Google Scholar 

  • Stubbs, G., Namba, K., and Makowski, L., 1986, Application of restrained least-squares refinement to fiber diffraction from macromolecular assemblies, Biophys. J. 49:58–60.

    Article  PubMed  CAS  Google Scholar 

  • Tollin, P., and Wilson, H. R., 1971, Some observations on the structure of the Campinas strain of tobacco rattle virus, J. Gen. Virol. 13:433–440.

    Article  PubMed  CAS  Google Scholar 

  • Tollin, P., Bancroft, J. B., Richardson, J. F., Payne, N. C., and Beveridge, T. J., 1979, Diffraction studies of papaya mosaic virus, Virology 98:108–115.

    Article  PubMed  CAS  Google Scholar 

  • Tollin, P., Wilson, H. R., and Bancroft, J. B., 1980, Further observations on the structure of particles of potato virus X, J. Gen Virol. 49:407–410.

    Article  CAS  Google Scholar 

  • Tollin, P., Wilson, H. R., Bancroft, J. B., Richardson, J. F., Payne, N. C., and Alford, W. P., 1981, Diffraction studies of clover yellow mosaic virus, J. Gen Virol. 52:205–208.

    Article  Google Scholar 

  • Torbet, J., and Maret, G., 1979, Fibres of highly oriented Pf1 bacteriophage produced in a strong magnetic field, J. Mol. Biol. 134:843–845.

    Article  PubMed  CAS  Google Scholar 

  • Valegård, K., Unge, T., Montelius, I., and Strandberg, B., 1986, Purification, crystallization and preliminary x-ray data of the bacteriophage MS2, J. Mol. Biol. 190:587–591.

    Article  PubMed  Google Scholar 

  • Varghese, J. N., Laver, W. G., and Colman, P. M., 1983, Structure of the influenza virus glycoprotein antigen neuraminidase at 2.9Å resolution, Nature 303:35–40.

    Article  PubMed  CAS  Google Scholar 

  • Wiley, D. C., Wilson, I. A., and Skehel, J. J., 1981, Structural identification of the antibody-binding sites of Hong Kong influenza haemagglutinin and their involvement in antigenic variation, Nature 289:373–378.

    Article  PubMed  CAS  Google Scholar 

  • Wilson, I. A., Skehel, I. I., and Wiley, D. C., 1981, Structure of the haemagglutinin membrane glycoprotein of influenza virus at 3Å resolution, Nature 289:366–373.

    Article  PubMed  CAS  Google Scholar 

  • Wittmann-Liebold, B., and Wittmann, H. G., 1967, Coat proteins of strains of two RNA viruses: Comparison of their amino acid sequences, Mol. Gen. Genet. 100:358–363.

    Article  PubMed  CAS  Google Scholar 

  • Wu, S., Rinehart, C., and Kaesberg, P., 1987, Sequence and organization of southern bean mosaic virus genomic RNA, Virology 161:73–80.

    Article  PubMed  CAS  Google Scholar 

  • Wyckoff, R. W. G., and Corey, R. B., 1936, X-ray diffraction patterns of crystalline tobacco mosaic proteins, J. Biol. Chem. 116:51–55.

    CAS  Google Scholar 

  • Ysebaert, M., van Emmelo, I., and Fiers, W., 1980, Total nucleotide sequence of a nearly full-size DNA copy of satellite tobacco necrosis virus RNA, J. Mol. Biol. 143:273–287.

    Article  PubMed  CAS  Google Scholar 

  • Zimmern, D., 1977, The nucleotide sequence at the origin for assembly on tobacco mosaic virus RNA, Cell 11:463–482.

    Article  PubMed  CAS  Google Scholar 

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© 1989 Plenum Press, New York

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Stubbs, G. (1989). Virus Structure. In: Fasman, G.D. (eds) Prediction of Protein Structure and the Principles of Protein Conformation. Springer, Boston, MA. https://doi.org/10.1007/978-1-4613-1571-1_3

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  • DOI: https://doi.org/10.1007/978-1-4613-1571-1_3

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