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Microarray and Single Cell Analysis Techniques in Bio-medical Fields

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Supramolecular Structure and Function 9
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Molecular diagnostic technologies will play a significant role in practice of medicine, public health and pharmaceutical industry. Together with genomics and proteomics techniques, the field of pharmacogenomics will develop, with the goal of personalization of diagnosis and therapy, for optimal efficiency and reduced toxicity, contributing to integrated healthcare. After the production of the first complete Human Genome Array at the EMBL in 2001, the array was validated in applications in several biomedical fields and the results published during the few following years. By the end of 2003 and early 2004, several well known commercial companies have announced the availability of similar comprehensive DNA arrays with oligonucleotides, short (22-70 bases long) DNA fragments. Among them Affymetrix, Agilent, Applied Biosystems. In the meantime the start-up company Nimblegen Systems offers the whole human genome on an array it sells as a service, with clients sending in the test sample mRNA, the company synthesises the oligonucleotide array designed by the customer, performs the tests and analysis, then delivers the results to the customers. Illumina company offers a bead based platform for gene expression profiling and genotyping.

Keywords: Microarray techniques, protein and antibody arrays, single cell analysis, RNA interference, cell arrays, stem cells.

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References

  • Abdollahi, A., Hahnfeldt, P., Maercker, C., Gröne, H.J., Debus, J., Ansorge, W., Folkman, J., Hlatky, L., and Huber, P.E. (2004) Endostatin’s Antiangiogenic Signaling Network. Mol. Cell. 13(5): 649-63.

    Article  Google Scholar 

  • Almstrup, K., Hoei-Hansen, C.E., Wirkner, U., Blake, J., Schwager, C., Ansorge, W., Nielsen, J.E., Skakkebæk, N.E., Rajpert-De Meyts, E., and Leffers, H. (2004) Embryonic stem cell-like features of testicular carcinoma in situ revealed by genome-wide gene expression profiling. Cancer Research 64(14): 4736-43.

    Article  Google Scholar 

  • Almstrup, K., Hoei-Hansen, C.E., Nielsen, J.E., Wirkner, U., Ansorge, W., Skakkebaek, N.E., Rajpert-De Meyts, E., Leffers, H. (2005) Genome-wide gene expression profiling of testicular carcinoma in situ progression into overt tumours. Br. J. Cancer. 92(10): 1934-41.

    Article  Google Scholar 

  • Ansorge, W. (1991) Process for Sequencing of Nucleic Acids Without Gel Support, German Patent Application, Date of Application: 13.12.1991, Nr. DE 41 41 178 A1.

    Google Scholar 

  • Arnold, I., Wagner-Ecker, M., Ansorge, W., Langer, T. (2006) Evidence for a novel mitochondria-to-nucleus signalling pathway in respiring cells lacking i-AAA protease and the ABC-transporter Mdl1. Gene 367: 74-88.

    Article  Google Scholar 

  • Boengler, K., Pipp, F., Fernandez, B., Richter, A., Schaper, W., Deindl, E. (2003) The ankyrin repeat containing SOCS box protein 5: a novel protein associated with arteriogenesis. Biochem. Biophys. Res. Commun. 302(1): 17-22.

    Article  Google Scholar 

  • Brazma, A., Hingamp, P., Quackenbush, J., Sherlock, G., Spellman, P., Stoeckert, C., Aach, J., Ansorge, W., Ball, C.A., Causton, H.C., Gaasterland, T., Glenisson, P., Holstege, F.C., Kim, I.F., Markowitz, V., Matese, J.C., Parkinson H, Robinson A, Sarkans U, SchulzeKremer S, Stewart J, Taylor R, Vilo, J., Vingron, M. (2001) Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nat. Genet. 29 (4): 365-71.

    Article  Google Scholar 

  • ChipSkipper software available from Dr. Christian Schwager, (schwager@embl.de, Christian.schwageer@dkfz.de).

    Google Scholar 

  • Cortes-Canteli, M., Wagner, M., Ansorge, W., Perez-Castillo, A. (2004) Microarray analysis supports a role for CCAAT/enhancer binding protein beta in brain injury. J. Biol. Chem. 279 (14): 14409-17.

    Article  Google Scholar 

  • Data base ArrayExpress and Expression profiler at EBI institute, www.EBI.ac.uk,

  • De Masi, F., Chiarella, P., Wilhelm, H., Massimi, M., Bullard, B., Ansorge, W., Sawyer, A. (2005) High-throughput mouse monoclonal antibodies using antigen microarrays. Proteomics 16: 4070-81.

    Article  Google Scholar 

  • Functional genomics, www.functionalgenomics.org.uk

  • Huber, P.E., Abdollahi, A., Weber, K.J., Rastert, R., Trinh, T., Krempien, R., Ansorge, W., Wannenmacher, M., Debus, J. (2002) Expression Profiling of irradiated human lung endothelial cells using a large DNA Chip. Inter. J. of Rad. Oncol. Biol. and Phys. 54: 24-25.

    Article  Google Scholar 

  • Human Genome on a Chip, EMBL press release, October 2002, (www.embl.de).

  • Khaitovich, P., Weiss, G., Lachmann Hellmann, I., Enard, W., Muetzel, B., Wirkner, U., Ansorge, W. and Pääbo, S. (2004) A Neutral Model of Transcriptome Evolution. PLoS Biol. 5: E132.

    Article  Google Scholar 

  • Maercker, Ch., Abdollahi, A., Rutenberg, Ch., Ridinger, H., Paces, O., Wang, J., Ansorge, W.J., Korn, B. and Huber, P.E. (2004) Antibody chips as a versatile tool for functional analysis of genes involved in tumor angiogenesis. In Proceedings of the HUGO meeting, Berlin, p. 59.

    Google Scholar 

  • Microarrays collection (2004) Nature Reviews, see: www.nature.com/reviews/focus/microarrays

  • Muckenthaler, M., Richter, A., Gunkel, N., Riedel, D., Polycarpou-Schwarz, M., Hentze, S., Falkenhahn, M., Stremmel, W., Ansorge, W., Hentze, M.W. (2003) Relationships and distinctions in iron-regulatory networks responding to interrelated signals. Blood 101(9): 3690-8.

    Article  Google Scholar 

  • Pellicano, F., Inglis-Broadgate, S.L., Pante, G., Ansorge, W., Iwata, T. (2006) Expression of coiled-coil protein 1, a novel gene downstream of FGF2, in the developing brain. Gene Expr Patterns 6(3): 285-93.

    Article  Google Scholar 

  • Relogio, A., Schwager, C., Richter, A., Ansorge, W., Valcarcel, J. (2002) Optimization of oligonucleotide-based DNA microarrays. Nucleic Acids Res. 30(11): e51.

    Article  Google Scholar 

  • Richter, A., Schwager, C., Hentze, S., Ansorge, W., Hentze, M.W., Muckenthaler, M. (2002) Comparison of fluorescent tag DNA labeling methods used for expression analysis by DNA microarrays. Biotechniques 33(3): 620-630.

    Google Scholar 

  • Wagner, W., Ansorge, A., Wirkner, U., Eckstein, V., Schwager, C., Blake, J., Miesala, K., Selig, J., Saffrich, R., Ansorge, W., Ho, A.D. (2004) Molecular evidence for stem cell function of the slow dividing fraction among human hematopoietic progenitor cells by genome wide analysis. Blood 104(3): 675-86.

    Article  Google Scholar 

  • Wagner, W., Wein, F., Seckinger, A., Frankhauser, M., Wirkner, U., Krause, U., Blake, J., Schwager, C., Eckstein, V., Ansorge, W., Ho, A.D. (2005a) Comparative characteristics of mesenchymal stem cells from human bone marrow, adipose tissue, and umbilical cord blood. Exp. Hematol. 33(11): 1402-16.

    Article  Google Scholar 

  • Wagner, W., Saffrich, R., Wirkner, U., Eckstein, V., Blake, J., Ansorge, A., Schwager, C., Wein, F., Miesala, K., Ansorge, W., Ho, A.D. (2005b) Hematopoietic progenitor cells and cellular microenvironment: behavioral and molecular changes upon interaction. Stem Cells. 23(8): 1180-91.

    Article  Google Scholar 

  • Wirkner, U., Maercker, Ch., Abdollahi, A., Wagner, M., Selig, J., Drzonek, H., Kellermann, A., Ansorge, A., Maurer, J., Schwager, Ch., Blake, J., Korn, B., Wagner, W., Ho, A.D., Huber, P., Radelof, U., and Ansorge, W.J. (2004) Human Genome on a Chip. In: Proceedings of the HUGO meeting, Berlin, p. 61.

    Google Scholar 

  • Wirkner, U., Maercker, C., Abdollahi, A., Wagner, M., Selig, J., Drzonek, H., Radelof, U., Kellermann, A., Ansorge, A., Maurer, J., Schwager, C., Korn, B., Wagner, W., Ho, A.D., Huber, P. and Ansorge, W. (2005) In: Patrinos, G.P. and Ansorge, W.J. eds., Human genome on a chip in bio-medical research. Molecular Diagnostics, Elsevier, Amsterdam.

    Google Scholar 

  • Ziauddin, J. and Sabatini, D.M. (2001) Microarrays of cell expressing defined cDNAs. Nature 411: 107-110.

    Article  ADS  Google Scholar 

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Ansorge, W.J. (2007). Microarray and Single Cell Analysis Techniques in Bio-medical Fields. In: Pifat-Mrzljak, G. (eds) Supramolecular Structure and Function 9. Springer, Dordrecht. https://doi.org/10.1007/978-1-4020-6466-1_15

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