The biogenesis of the photosynthetic apparatus depends on the concerted interactions between the nucleo-cytosolic and chloroplast genetic systems. Combined genetic and biochemical approaches in Chlamydomonas and land plants revealed a surprisingly large number of nucleus-encoded factors that are required for the different post-transcriptional steps of chloroplast gene expression. These steps include RNA processing, RNA stability, splicing, translation and assembly of the chloroplast-encoded proteins into functional complexes. The genes of several of these proteins were cloned and their products characterized.
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References
Akins RA and Lambowitz AM (1987) A protein required for splicing group I introns in Neurospora mitochondria is mi-tochondrial tyrosyl-tRNA synthetase or a derivative thereof. Cell 50: 331-345
Allison LA (2000) The role of sigma factors in plastid transcrip-tion. Biochimie 82: 537-548
Alonso JM, Stepanova AN, Leisse TJ, Kim CJ, Chen H, Shinn P, Stevenson DK, Zimmerman J, Barajas P, Cheuk R, Gadrinab C, Heller C, Jeske A, Koesema E, Meyers CC, Parker H, Pred-nis L, Ansari Y, Choy N, Deen H, Geralt M, Hazari N, Hom E, Karnes M, Mulholland C, Ndubaku R, Schmidt I, Guzman P, Aguilar-Henonin L, Schmid M, Weigel D, Carter DE, Marc-hand T, Risseeuw E, Brogden D, Zeko A, Crosby WL, Berry CC and Ecker JR (2003) Genome-wide insertional mutagen-esis of Arabidopsis thaliana. Science 301: 653-657
Auchincloss AH, Zerges W, Perron K, Girard-Bascou J and Rochaix JD (2002) Characterization of Tbc2, a nucleus-encoded factor specifically required for translation of the chloroplast psbC mRNA in Chlamydomonas reinhardtii. J Cell Biol 157: 953-962
Baginsky S, Shteiman-Kotler A, Liveanu V, Yehudai-Resheff S, Bellaoui M, Settlage RE, Shabanowitz J, Hunt DF, Schuster G and Gruissem W (2001) Chloroplast PNPase exists as a homo-multimer enzyme complex that is distinct from the Escherichia coli degradosome. RNA 7: 1464-1475
Bellafiore S, Ferris P, Naver H, Gohre V and Rochaix JD (2002) Loss of Albino3 leads to the specific depletion of the light-harvesting system. Plant Cell 14: 2303-2314
Bellaoui M, Keddie JS and Gruissem W (2003) DCL is a plant-specific protein required for plastid ribosomal RNA pro-cessing and embryo development. Plant Mol Biol 53: 531-543
Bennoun P and Levine RP (1967) Detecting mutants that have impaired photosynthesis by their increased level of fluores-cence. Plant Physiol 42: 1284-1287
Boudreau E, Takahashi Y, Lemieux C, Turmel M and Rochaix JD (1997a) The chloroplast ycf3 and ycf4 open reading frames of Chlamydomonas reinhardtii are required for the accumu lation of the photosystem I complex. EMBO J 16: 6095-6104
Boudreau E, Turmel M, Goldschmidt-Clermont M, Rochaix JD, Sivan S, Michaels A and Leu S (1997b) A large open reading frame (orf1995) in the chloroplast DNA of Chlamydomonas reinhardtii encodes an essential protein. Mol Gen Genet 253: 649-653
Boudreau E, Nickelsen J, Lemaire SL, Ossenb ühl F and Rochaix J-D (2000) The Nac2 gene of Chlamydomonas encodes a chloroplast TPR-like protein involved in psbD mRNA sta-bility. EMBO J 19: 3366-3376
Boynton JE and Gillham NW (1996) Chloroplast transformation in Chlamydomonas. Meth Enzymol 264: 279-296
Caponigro G and Parker R (1996) mRNA turnover in yeast pro-moted by the MATalpha1 instability element. Nucleic Acids Res 24: 4304-4312
Choquet Y, Goldschmidt-Clermont M, Girard-Bascou J, K ück U, Bennoun P and Rochaix JD (1988) Mutant phenotypes sup-port a trans-splicing mechanism for expression of the tripartite psaA gene in the C. reinhardtii chloroplast. Cell 52:903-913
Choquet Y, Stern DB, Wostrikoff K, Kuras R, Girard-Bascou J and Wollman FA (1998) Translation of cytochrome f is au- toregulated through the 5′ untranslated region of petA mRNA in Chlamydomonas chloroplasts. Proc Natl Acad Sci USA 95: 4380-4385
Choquet Y, Wostrikoff K, Rimbault B, Zito F, Girard-Bascou J, Drapier D and Wollman FA (2001) Assembly-controlled regulation of chloroplast gene translation. Biochem Soc Trans 29: 421-426
Choquet Y, Zito F, Wostrikoff K and Wollman FA (2003) Cy-tochrome f translation in Chlamydomonas chloroplast is au-toregulated by its carboxyl-terminal domain. Plant Cell 15: 1443-1454
Cline K (1986) Import of proteins into chloroplasts. Membrane integration of a thylakoid precursor protein reconstituted in chloroplast lysates. J Biol Chem 261: 14804-14810
Cline K and Henry R (1996) Import and routing of nucleus-encoded chloroplast proteins. Ann Rev Cell Devel Biol 12: 1-26
Coffin JW, Dhillon R, Ritzel RG and Nargang FE (1997) The Neurospora crassa cya-5 nuclear gene encodes a protein with a region of homology to the Saccharomyces cerevisiae PET309 protein and is required in a post-transcriptional step for the expression of the mitochondrially encoded COXI protein. Curr Genet 32: 273-280
Danon A and Mayfield SP (1991) Light regulated translational activators: identification of chloroplast gene specific mRNA binding proteins. EMBO J 10: 3993-4001
Danon A and Mayfield SP (1994a) Light-regulated translation of chloroplast messenger RNAs through redox potential. Science 266: 1717-1719
Danon A and Mayfield SP (1994b) ADP-dependent phosphory-lation regulates RNA-binding in vitro: implications in light-modulated translation. EMBO J 13: 2227-2235
Das AK, Cohen PW and Barford D (1998) The structure of the tetratricopeptide repeats of protein phosphatase 5: implica-tions for TPR-mediated protein-protein interactions. EMBO J 17: 1192-1199
Dauvillee D, Stampacchia O, Girard-Bascou J and Rochaix JD (2003) Tab2 is a novel conserved RNA binding protein required for translation of the chloroplast psaB mRNA. EMBO J 22: 6378-6388
Deng XW and Gruissem W (1987) Control of plastid gene ex-pression during development: the limited role of transcrip-tional regulation. Cell 49:379-387
Deshpande NN, Bao Y and Herrin DL (1997) Evidence for light/redox-regulated splicing of psbA pre-RNAs in Chlamy-domonas chloroplasts. RNA 3: 37-48
Drager RG, Girard-Bascou J, Choquet Y, Kindle KL and Stern DB (1998) In vivo evidence for 5′ ->3′ exoribonuclease degra-dation of an unstable chloroplast mRNA. Plant J 13: 85-96
Drapier D, Girard-Bascou J and Wollman FA (1992) Evidence for nuclear control of the expression of the atpA and atpB chloroplast genes in Chlamydomonas. Plant Cell 4: 283-295
Drescher A, Ruf S, Calsa T, Jr., Carrer H and Bock R (2000) The two largest chloroplast genome-encoded open reading frames of higher plants are essential genes. Plant J 22: 97-104
Durrenberger F and Rochaix JD (1991) Chloroplast ribosomal intron of Chlamydomonas reinhardtii: in vitro self-splicing, DNA endonuclease activity and in vivo mobility. EMBO J 10: 3495-3501
Edwards TA, Pyle SE, Wharton RP and Aggarwal AK (2001) Structure of Pumilio reveals similarity between RNA and pep-tide binding motifs. Cell 105:281-289
Fargo DC, Boynton JE and Gillham NW (2001) Chloroplast ri-bosomal protein S7 of Chlamydomonas binds to chloroplast mRNA leader sequences and may be involved in translation initiation. Plant Cell 13: 207-218
Felder S, Meierhoff K, Sane AP, Meurer J, Driemel C, Plucken H, Klaff P, Stein B, Bechtold N and Westhoff P (2001) The nucleus-encoded HCF107 gene of Arabidopsis provides a link between intercistronic RNA processing and the accumula-tion of translation-competent psbH transcripts in chloroplasts. Plant Cell 13: 2127-2141
Fisk DG, Walker MB and Barkan A (1999) Molecular cloning of the maize gene crp1 reveals similarity between regulators of mitochondrial and chloroplast gene expression. EMBO J 18: 2621-2630
Gamble PE and Mullet JE (1989) Translation and stability of pro-teins encoded by the plastid psbA and psbB genes are regulated by a nuclear gene during light-induced chloroplast development in barley. J Biol Chem 264:7236-7243
Girard J, Chua NH, Bennoun P, Schmidt G and Delosme M (1980) Studies on mutants deficient in the photosystem I reaction centers in Chlamydomonas reinhardtii. Curr Genet 2: 215-221
Girard-Bascou J, Choquet Y, Schneider M, Delosme M and Dron M (1987) Characterization of a chloroplast mutation in the psaA2 gene of Chlamydomonas reinhardtii. Curr Genet 12: 489-495
Girard-Bascou J, Pierre Y and Drapier D (1992) A nuclear mu-tation affects the synthesis of the chloroplast psbA gene pro-duction Chlamydomonas reinhardtii. Curr Genet 22:47-52
Girard-Bascou J, Choquet Y, Gumpel N, Culler D, Purton S, Merchant S, Laquerri ère F and Wollman FA (1995) In: Mathis P (ed) Photosynthesis: From Light to the Biosphere, pp 683-686. Kluwer, Dordrecht, The Netherlands
Gold L (1988) Posttranscriptional regulatory mechanisms in Es-cherichia coli. Annu Rev Biochem 57: 199-233
Goldschmidt-Clermont M (1991) Transgenic expression of aminoglycoside adenine transferase in the chloroplast: a selectable marker of site-directed transformation of Chlamy-domonas. Nucleic Acids Res 19: 4083-4089
Goldschmidt-Clermont M, Girard-Bascou J, Choquet Y and Rochaix JD (1990) Trans-splicing mutants of Chlamydomonas reinhardtii. Mol Gen Genet 223: 417-425
Goldschmidt-Clermont M, Choquet Y, Girard-Bascou J, Michel F, Schirmer-Rahire M and Rochaix JD (1991) A small chloro-plast RNA may be required for trans-splicing in Chlamy-domonas reinhardtii. Cell 65: 135-143
Groves MR, Hanlon N, Turowski P, Hemmings BA and Barford D (1999) The structure of the protein phosphatase 2A PR65/A subunit reveals the conformation of its 15 tandemly repeated HEAT motifs. Cell 96: 99-110
Grunberg-Manago M (1999) Messenger RNA stability and its role in control of gene expression in bacteria and phages. Annu Rev Genet 33: 193-227
Gumpel NJ, Ralley L, Girard-Bascou J, Wollman FA, Nugent JH and Purton S (1995) Nuclear mutants of Chlamydomonas reinhardtii defective in the biogenesis of the cytochrome b6f complex. Plant Mol Biol 29: 921-932
Hajdukiewicz PT, Allison LA and Maliga P (1997) The two RNA polymerases encoded by the nuclear and the plastid compart-ments transcribe distinct groups of genes in tobacco plastids. EMBO J 16: 4041-4048
Harris EH (1989) The Chlamydomonas Source Book: a Com-prehensive Guide to Biology and Laboratory Use. Academic Press, San Diego
Hashimoto M, Endo T, Peltier G, Tasaka M and Shikanai T (2003) A nucleus-encoded factor, CRR2, is essential for the expres-sion of chloroplast ndhB in Arabidopsis. Plant J 36: 541-549
Herbert CJ, Labouesse M, Dujardin G and Slonimski PP (1988) The NAM2 proteins from S. cerevisiae and S. douglasii are mitochondrial leucyl-tRNA synthetases, and are involved in mRNA splicing. EMBO J 7: 473-483
Herrin DL, Chen YF and Schmidt GW (1990) RNA splicing in Chlamydomonas chloroplasts. Self-splicing of 23 S preRNA. J Biol Chem 265: 21134-21140
Herrin DL, Bao Y, Thompson AJ and Chen YF (1991) Self-splicing of the Chlamydomonas chloroplast psbA introns. Plant Cell 3: 1095-1107
Hoober JK, Boyd CO and Paavola LG (1991) Origin of thylakoid membranes in Chlamydomonas reinhardtii y-1 at 38â—¦C. Plant Physiol 96: 1321-1328
Howe G and Merchant S (1993) Maturation of thylakoid lumen proteins proceeds post-translationally through an intermediate in vivo. Proc Natl Acad Sci USA 90: 1862-1866
Huber AH, Nelson WJ and Weis WI (1997) Three-dimensional structure of the armadillo repeat region of beta-catenin. Cell 90: 871-882
Hugueney P, Bouvier F, Badillo A, d’Harlingue A, Kuntz M and Camara B (1995) Identification of a plastid protein involved in vesicle fusion and/or membrane protein translocation. Proc Natl Acad Sci USA 92: 5630-5634
Jenkins BD and Barkan A (2001) Recruitment of a peptidyl-tRNA hydrolase as a facilitator of group II intron splicing in chloroplasts. EMBO J 20:872-879
Jenkins BD, Kulhanek DJ and Barkan A (1997) Nuclear mu-tations that block group II RNA splicing in maize chloro-plasts reveal several intron classes with distinct requirements for splicing factors. Plant Cell 9: 283-296
Keddie JS, Carroll B, Jones JD and Gruissem W (1996) The DCL gene of tomato is required for chloroplast development and palisade cell morphogenesis in leaves. EMBO J 15: 4208-4217
Kim J and Mayfield SP (1997) Protein disulfide isomerase as a regulator of chloroplast translational activation. Science 278: 1954-1957
Kim J, Klein PG and Mullet JE (1991) Ribosomes pause at spe-cific sites during synthesis of membrane-bound chloroplast reaction center protein D1. J Biol Chem 266: 14931-14938
Kim J, Mullet JE and Klein PG (1994) Ribosome-binding sites on chloroplast rbcL and psbA mRNAs and light-induced initiation of D1 translation. Plant Mol Biol 25: 437-448
Krause K, Maier RM, Kofer W, Krupinska K and Herrmann RG (2000) Disruption of plastid-encoded RNA polymerase genes in tobacco: expression of only a distinct set of genes is not based on selective transcription of the plastid chromosome. Mol Gen Genet 263: 1022-1030
Kroll D, Meierhoff K, Bechtold N, Kinoshita M, Westphal S, Vothknecht UC, Soll J and Westhoff P (2001) VIPP1, a nuclear gene of Arabidopsis thaliana essential for thylakoid membrane formation. Proc Natl Acad Sci USA 98: 4238-4242
Kuchka M, Mayfield SP and Rochaix JD (1988) Nuclear mu-tations specifically affect the synthesis and/or degradation of the chloroplast encoded D2 polypeptide of photosystem II in Chlamydomonas reinhardtii. EMBO J 7: 319-324
Kuchka MR, Goldschmidt-Clermont M, van Dillewijn J and Rochaix JD (1989) Mutation at the Chlamydomonas nu-clear NAC2 locus specifically affects stability of the chloro-plast psbD transcript encoding polypeptide D2 of PS II. Cell 58:869-876
K ück U, Choquet Y, Schneider M, Dron M and Bennoun P (1987) Structural and transcriptional analysis of two homolo-gous genes for the P700 chlorophyll a-apoproteins in Chlamy-domonas reinhardtii: evidence for in vivo trans splicing. EMBO J 6:2185-2195
Kuhn A, Stuart R, Henry R and Dalbey RE (2003) The Alb3/Oxa1/YidC protein family: membrane-localized chap-erones facilitating membrane protein insertion? Trends Cell Biol 13: 510-516
Legen J, Kemp S, Krause K, Profanter B, Herrmann RG and Maier RM (2002) Comparative analysis of plastid transcrip-tion profiles of entire plastid chromosomes from tobacco attributed to wild-type and PEP-deficient transcription ma-chineries. Plant J 31: 171-188
Lerbs-Mache S (1993) The 110-kDa polypeptide of spinach plas-tid DNA-dependent RNA polymerase: single-subunit enzyme or catalytic core of multimeric enzyme complexes? Proc Natl Acad Sci USA 90: 5509-5513
Levine RP (1960) Genetic control of photosynthesis in Chlamy-domonas reinhardtii. Proc Natl Acad Sci USA 46: 972-977
Lezhneva L and Meurer J (2004) The nuclear factor HCF145 affects chloroplast psaA-psaB-rps14 transcript abundance in Arabidopsis thaliana. Plant J 38: 740-753
Lezhneva L, Amann K and Meurer J (2004) The universally con-served HCF101 protein is involved in assembly of [4Fe-4S]-cluster-containing complexes in Arabidopsis thaliana chloro-plasts. Plant J 37: 174-185
Li F, Holloway SP, Lee J and Herrin DL (2002) Nuclear genes that promote splicing of group I introns in the chloroplast 23S rRNA and psbA genes in Chlamydomonas reinhardtii. Plant J 32: 467-480
Li J, Goldschmidt-Clermont M and Timko MP (1993) Chloroplast-encoded chlB is required for light-independent protochlorophyllide reductase activity in Chlamydomonas reinhardtii. Plant Cell 5: 1817-1829
Liere K and Link G (1997) Chloroplast endoribonuclease p54 involved in RNA 3′ -end processing is regulated by phospho-rylation and redox state. Nucleic Acids Res 25: 2403-2408
Liere K and Maliga P (2001) Plastid RNA polymerases in higher plants. In: Aro EM and Andersson B (eds) Regulation of Pho-tosynthesis, pp 29-49. Kluwer, Dordrecht, The Netherlands
Lisitsky I, Kotler A and Schuster G (1997) The mechanism of preferential degradation of polyadenylated RNA in the chloro-plast. The exoribonuclease 100RNP/polynucleotide phospho-rylase displays high binding affinity for poly(A) sequence. J Biol Chem 272: 17648-17653
Lown FJ, Watson AT and Purton S (2001) Chlamydomonas nu-clear mutants that fail to assemble respiratory or photosyn-thetic electron transfer complexes. Biochem Soc Trans 29: 452-455
Maliga P (1998) Two plastid RNA polymerases of higher plants: an evolving story. Trends Plant Sci 3: 4-6
Malnoe P, Mayfield SP and Rochaix JD (1988) Comparative anal-ysis of the biogenesis of photosystem II in the wild- type and Y -1 mutant of Chlamydomonas reinhardtii. J Cell Biol 106: 609-616
Manthey GM, Przybyla-Zawislak BD and McEwen JE (1998) The Saccharomyces cerevisiae Pet309 protein is embedded in the mitochondrial inner membrane. Eur J Biochem 255:156-161
McCormac DJ and Barkan A (1999) A nuclear gene in maize required for the translation of the chloroplast atpB/E mRNA. Plant Cell 11: 1709-1716
Meierhoff K, Felder S, Nakamura T, Bechtold N and Schuster G (2003) HCF152, an Arabidopsis RNA binding pentatricopep-tide repeat protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD RNAs. Plant Cell 15: 1480-1495
Merendino L, Falciatore A and Rochaix JD (2003) Expression and RNA binding properties of the chloroplast ribosomal protein S1 from Chlamydomonas reinhardtii. Plant Mol Biol 53: 371-382
Meurer J, Plucken H, Kowallik KV and Westhoff P (1998a) A nuclear-encoded protein of prokaryotic origin is essential for the stability of photosystem II in Arabidopsis thaliana. EMBO J 17: 5286-5297
Meurer J, Grevelding C, Westhoff P and Reiss B (1998b) The PAC protein affects the maturation of specific chloroplast mRNAs in Arabidopsis thaliana. Mol Gen Genet 258: 342-351
Meurer J, Lezhneva L, Amann K, Godel M, Bezhani S, Sheram-eti I and Oelmuller R (2002) A peptide chain release factor 2 affects the stability of UGA-containing transcripts in Ara-bidopsis chloroplasts. Plant Cell 14: 3255-3269
Miles D (1982) The use of mutations to probe photosynthesis in higher plants. In: Edelman M, Hallick RB and Chua NH (eds) Methods in Chloroplast Molecular Biology, pp 75-107. Elsevier Biomedical Press, Amsterdam
Monde RA, Zito F, Olive J, Wollman FA and Stern DB (2000) Post-transcriptional defects in tobacco chloroplast mutants lacking the cytochrome b6/f complex. Plant J 21: 61-72
Monod C, Goldschmidt-Clermont M and Rochaix JD (1992) Ac-cumulation of chloroplast psbB RNA requires a nuclear factor in Chlamydomonas reinhardtii. Mol Gen Genet 231:449-459
Moore M, Harrison MS, Peterson EC and Henry R (2000) Chloroplast Oxa1p homolog albino3 is required for post-translational integration of the light harvesting chlorophyll-binding protein into thylakoid membranes. J Biol Chem 275:1529-1532
Morr é DJ, Selld én G, Sundquist C and Sandelius AS (1991) Stromal low temperature compartment derived from the in-ner membrane of the chloroplast envelope. Plant Physiol 97: 1558-1564
Mullet JE (1993) Dynamic regulation of chloroplast transcrip-tion. Plant Physiol 103: 309-313
Naver H, Boudreau E and Rochaix JD (2001) Functional studies of Ycf3: its role in assembly of photosystem I and interactions with some of its subunits. Plant Cell 13: 2731-2745
Nickelsen J and Link G (1993) The 54-kDa RNA-binding protein from mustard chloroplasts mediates endonucleolytic transcript 3′ -end formation in vitro. Plant J 3: 537-544
Nickelsen J, van Dillewijn J, Rahire M and Rochaix JD (1994) Determinants for stability of the chloroplast psbD RNA are located within its short leader region in Chlamydomonas reinhardtii. EMBO J 13: 3182-3191
Nickelsen J, Fleischmann M, Boudreau E, Rahire M and Rochaix JD (1999) Identification of cis-acting RNA leader elements required for chloroplast psbD gene expression in Chlamydomonas. Plant Cell 11: 957-970
Oldenburg DJ and Bendich AJ (2003) Most chloroplast DNA of maize seedlings in linear molecules with defined ends and branched forms. J Mol Biol 335: 953-970
Ossenbuhl F and Nickelsen J (2000) cis- and trans-acting de-terminants for translation of psbD mRNA in Chlamydomonas reinhardtii. Mol Cell Biol 20: 8134-8142
Ossenbuhl F, Gohre V, Meurer J, Liszkay-Krieger A, Rochaix JD and Eichacker LA (2004) Efficient assembly of photo-system II in Chlamydomonas reinhardtii requires Alb3.1p, a homolog of Arabidopsis ALBINO3. Plant Cell 16: 1790-1800
Ostheimer GJ, Williams-Carrier R, Belcher S, Osborne E, Gierke J and Barkan A (2003) Group II intron splicing factors derived by diversification of an ancient RNA-binding domain. EMBO J 22: 3919-3929
Park JM, Cho JH, Kang SG, Jang HJ, Pih KT, Piao HL, Cho MJ and Hwang I (1998) A dynamin-like protein in Arabidopsis thaliana is involved in biogenesis of thylakoid membranes. EMBO J 17: 859-867
Perron K, Goldschmidt-Clermont M and Rochaix JD (1999) A factor related to pseudouridine synthases is required for chloroplast group II intron trans-splicing in Chlamydomonas reinhardtii. EMBO J 18: 6481-6490
Perron K, Goldschmidt-Clermont M and Rochaix JD (2004) A multiprotein complex involved in chloroplast group II intron splicing. RNA 10:704-711
Purton S and Rochaix JD (1994) Complementation of a Chlamy-domonas reinhardtii mutant using a genomic cosmid library. Plant Mol Biol 24: 533-537
Rattanachaikunsopon P, Rosch C and Kuchka MR (1999) Cloning and characterization of the nuclear AC115 gene of Chlamydomonas reinhardtii. Plant Mol Biol 39: 1-10
Reed JE, Cline K, Stephens LC, Bacot KO and Viitanen PV (1990) Early events in the import/assembly pathway of an in-tegral thylakoid protein. Eur J Biochem 194: 33-42
Ris H and Plaut W (1962) Ultrastructure of DNA-containing areas in the chloroplast of Chlamydomonas. J Cell Biol 13: 383-391
Rivier C, Goldschmidt-Clermont M and Rochaix JD (2001) Iden-tification of an RNA-protein complex involved in chloroplast group II intron trans-splicing in Chlamydomonas reinhardtii. EMBO J 20: 1765-1773
Rochaix JD (1996) Post-transcriptional regulation of chloroplast gene expression in Chlamydomonas reinhardtii. Plant Mol Biol 32: 327-341
Rochaix JD, Kuchka M, Mayfield S, Schirmer-Rahire M, Girard-Bascou J and Bennoun P (1989) Nuclear and chloroplast mutations affect the synthesis or stability of the chloroplast psbC gene product in Chlamydomonas reinhardtii. EMBO J 8: 1013-1021
Rolland N, Janosi L, Block MA, Shuda M, Teyssier E, Miege C, Cheniclet C, Carde JP, Kaji A and Joyard J (1999) Plant ribosome recycling factor homologue is a chloroplastic protein and is bactericidal in Escherichia coli carrying temperature-sensitive ribosome recycling factor. Proc Natl Acad Sci USA 96: 5464-5469
Roy LM and Barkan A (1998) A SecY homologue is required for the elaboration of the chloroplast thylakoid membrane and for normal chloroplast gene expression. J Cell Biol 141: 385-395
Ruf S, K össel H and Bock R (1997) Targeted inactivation of a tobacco intron-containing open reading frame reveals a novel chloroplast-encoded photosystem I-related gene. J Cell Biol 139: 95-102
Schuster G, Lisitsky I and Klaff P (1999) Polyadenylation and degradation of mRNA in the chloroplast. Plant Physiol 120: 937-944
Sieburth LE, Berry-Lowe S and Schmidt GW (1991) Chloroplast RNA stability in Chlamydomonas: rapid degradation of psbB and psbC transcripts in two nuclear mutants. Plant Cell 3: 175-189
Small ID and Peeters N (2000) The PPR motif-a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 25: 46-47
Smeekens S, Bauerle C, Hageman J, Keegstra K and Weisbeek P (1986) The role of the transit peptide in the routing of pre-cursors toward different chloroplast compartments. Cell 46: 365-375
Stampacchia O, Girard-Bascou J, Zanasco JL, Zerges W, Ben-noun P and Rochaix JD (1997) A nuclear-encoded function essential for translation of the chloroplast psaB mRNA in Chlamydomonas. Plant Cell 9: 773-782
Stern DB, Hanson MR and Barkan A (2004) Genetics and ge-nomics of chloroplast biogenesis: maize as a model system. Trends Plant Sci 9: 293-301
Sugiura M (1992) The chloroplast genome. Plant Mol Biol 19: 149-168
Sundberg E, Slagter JG, Fridborg I, Cleary SP, Robinson C and Coupland G (1997) ALBINO3, an Arabidopsis nuclear gene essential for chloroplast differentiation, encodes a chloroplast protein that shows homology to proteins present in bacterial membranes and yeast mitochondria. Plant Cell 9: 717-730
Swiatek M, Kuras R, Sokolenko A, Higgs D, Olive J, Cinque G, Muller B, Eichacker LA, Stern DB, Bassi R, Herrmann RG and Wollman FA (2001) The chloroplast gene ycf9 en-codes a photosystem II (PSII) core subunit, PsbZ, that partici-pates in PSII supramolecular architecture. Plant Cell 13:1347-1367
Tam LW and Lefebvre PA (1995) Insertional mutagenesis and isolation of tagged genes in Chlamydomonas. Meth Cell Biol 47: 519-523
Till B, Schmitz-Linneweber C, Williams-Carrier R and Barkan A (2001) CRS1 is a novel group II intron splicing factor that was derived from a domain of ancient origin. RNA 7: 1227-1238
Trebitsh T, Levitan A, Sofer A and Danon A (2000) Translation of chloroplast psbA mRNA is modulated in the light by coun-teracting oxidizing and reducing activities. Mol Cell Biol 20: 1116-1123
Trebitsh T, Meiri E, Ostersetzer O, Adam Z and Danon A (2001) The protein disulfide isomerase-like RB60 is partitioned be-tween stroma and thylakoids in Chlamydomonas reinhardtii chloroplasts. J Biol Chem 276: 4564-4569
Vaistij FE, Goldschmidt-Clermont M, Wostrikoff K and Rochaix JD (2000a) Stability determinants in the chloroplast psbB/T /H mRNAs of Chlamydomonas reinhardtii. Plant J 21:469-482
Vaistij FE, Boudreau E, Lemaire SD, Goldschmidt-Clermont M and Rochaix JD (2000b) Characterization of Mbb1, a nucleus-encoded tetratricopeptide-like repeat protein required for ex-pression of the chloroplast psbB/psbT/psbH gene cluster in Chlamydomonas reinhardtii. Proc Natl Acad Sci USA 97: 14813-14818
Westphal S, Soll J and Vothknecht UC (2001) A vesicle transport system inside chloroplasts. FEBS Lett 506: 257-261
Wilde A, Hartel H, Hubschmann T, Hoffmann P, Shestakov SV and Borner T (1995) Inactivation of a Synechocystis sp strain PCC 6803 gene with homology to conserved chloro-plast open reading frame 184 increases the photosystem II-to-photosystem I ratio. Plant Cell 7: 649-658
Williams PM and Barkan A (2003) A chloroplast-localized PPR protein required for plastid ribosome accumulation. Plant J 36: 675-686
Wostrikoff K, Choquet Y, Wollman FA and Girard-Bascou J (2001) TCA1, a single nuclear-encoded translational activa-tor specific for petA mRNA in Chlamydomonas reinhardtii chloroplast. Genetics 159: 119-132
Wostrikoff K, Girard-Bascou J, Wollman FA and Choquet Y (2004) Biogenesis of PSI involves a cascade of translational autoregulation in the chloroplast of Chlamydomonas. EMBO J 23: 2696-2705
Xie Z and Merchant S (1996) The plastid-encoded ccsA gene is required for heme attachment to chloroplast c-type cy-tochromes. J Biol Chem 271:4632-4639
Yamaguchi K and Subramanian AR (2000) The plastid ribosomal proteins. Identification of all the proteins in the 50S subunit of an organelle ribosome (chloroplast). J Biol Chem 275: 28466-28482
Yamaguchi K and Subramanian AR (2003) Proteomic identifi-cation of all plastid-specific ribosomal proteins in higher plant chloroplast 30S ribosomal subunit. Eur J Biochem 270: 190-205
Yamaguchi K, Prieto S, Beligni MV, Haynes PA, McDon-ald WH, Yates JR, 3rd and Mayfield SP (2002) Proteomic characterization of the small subunit of Chlamydomonas rein-hardtii chloroplast ribosome: identification of a novel S1 domain-containing protein and unusually large orthologs ofbacterial S2, S3, and S5. Plant Cell 14: 2957-2974
Yamaguchi K, Beligni MV, Prieto S, Haynes PA, McDonald WH, Yates JR, 3rd and Mayfield SP (2003) Proteomic characteriza-tion of the Chlamydomonas reinhardtii chloroplast ribosome; identification of proteins unique to the 70S ribosome. J Biol Chem 278: 33774-33785
Yamazaki H, Tasaka M and Shikanai T (2004) PPR motifs of the nucleus-encoded factor, PGR3, function in the selective and distinct steps of chloroplast gene expression in Arabidopsis. Plant J 38: 152-163
Yang J and Stern DB (1997) The spinach chloroplast endonucle-ase CSP41cleaves the 3′ untranslated region of petD mRNA primarily within its 3′ stem loop structure. J Biol Chem 272: 12784-12880
Yang J, Schuster G and Stern DB (1996) CSP41, a sequence-specific chloroplast mRNA binding protein, is an endoribonu-clease. Plant Cell 8:1409-1420
Yehudai-Resheff S, Hirsh M and Schuster G (2001) Polynu-cleotide phosphorylase functions as both an exonuclease and a poly(A) polymerase in spinach chloroplasts. Mol Cell Biol 21: 5408-5416
Yohn CB, Cohen A, Danon A and Mayfield SP (1998a) A poly(A) binding protein functions in the chloroplast as a message-specific translation factor. Proc Natl Acad Sci USA 95: 2238-2243
Yohn CB, Cohen A, Rosch C, Kuchka MR and Mayfield SP (1998b) Translation of the chloroplast psbA mRNA requires the nuclear-encoded poly(A)-binding protein, RB47. J Cell Biol 142: 435-442
Zerges W and Rochaix JD (1994) The 5′ leader of a chloro-plast mRNA mediates the translational requirements for two nucleus-encoded functions in Chlamydomonas reinhardtii. Mol Cell Biol 14: 5268-5277
Zerges W and Rochaix JD (1998) Low density membranes are associated with RNA-binding proteins and thylakoids in the chloroplast of Chlamydomonas reinhardtii. J Cell Biol 140: 101-110
Zerges W, Girard-Bascou J and Rochaix JD (1997) Translation of the chloroplast psbC mRNA is controlled by interactions between its 5′ leader and the nuclear loci TBC1 and TBC3 in Chlamydomonas reinhardtii. Mol Cell Biol 17: 3440-3448
Zhang H, Herman PL and Weeks DP (1994) Gene isolation through genomic complementation using an indexed library of Chlamydomonas reinhardtii DNA. Plant Mol Biol 24:663-672
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Rochaix, JD. (2007). The Role of Nucleus- and Chloroplast-Encoded Factors in the Synthesis of the Photosynthetic Apparatus. In: Wise, R.R., Hoober, J.K. (eds) The Structure and Function of Plastids. Advances in Photosynthesis and Respiration, vol 23. Springer, Dordrecht. https://doi.org/10.1007/978-1-4020-4061-0_7
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